Wall clock time and date at job start Sun Mar 29 2020 22:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99788 * 2 1 4 4 H 1.48498 * 109.47211 * 274.86850 * 3 2 1 5 5 H 1.48501 * 109.46966 * 34.87149 * 3 2 1 6 6 H 1.48499 * 109.46791 * 154.86749 * 3 2 1 7 7 C 1.38803 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 188.31163 * 7 2 1 9 9 N 1.36941 * 120.00166 * 8.30549 * 7 2 1 10 10 C 1.49701 * 126.05609 * 13.89559 * 9 7 2 11 11 C 1.50904 * 102.26557 * 154.83602 * 10 9 7 12 12 H 1.08998 * 109.99654 * 291.15540 * 11 10 9 13 13 C 1.50295 * 125.75107 * 155.89601 * 11 10 9 14 14 C 1.55948 * 104.15413 * 214.84843 * 13 11 10 15 15 C 1.56396 * 105.78830 * 7.54529 * 14 13 11 16 16 C 1.50772 * 101.65983 * 24.99792 * 15 14 13 17 17 H 1.09007 * 109.59537 * 69.24430 * 16 15 14 18 18 C 1.49212 * 126.06176 * 193.86198 * 9 7 2 19 19 H 1.09002 * 110.36113 * 291.91298 * 18 9 7 20 20 C 1.50699 * 110.35899 * 54.11399 * 18 9 7 21 21 N 1.34777 * 119.99901 * 197.07402 * 20 18 9 22 22 O 1.21276 * 120.00140 * 17.07864 * 20 18 9 23 23 H 0.97001 * 120.00246 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.84311 * 273.03173 * 10 9 7 25 25 H 1.09000 * 110.84469 * 36.64311 * 10 9 7 26 26 H 1.08997 * 110.49674 * 333.51917 * 13 11 10 27 27 H 1.09001 * 110.49272 * 96.05249 * 13 11 10 28 28 H 1.08995 * 110.18242 * 126.62347 * 14 13 11 29 29 H 1.09005 * 110.18544 * 248.38999 * 14 13 11 30 30 H 1.09001 * 111.00403 * 143.09338 * 15 14 13 31 31 H 1.09005 * 111.00144 * 266.90214 * 15 14 13 32 32 H 0.97002 * 120.00037 * 0.02562 * 21 20 18 33 33 H 0.96999 * 120.00156 * 179.72265 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3947 2.1059 -1.3950 5 1 1.5028 2.6208 0.8005 6 1 3.5953 1.4127 0.5946 7 6 2.0102 -1.2021 -0.0005 8 1 3.0817 -1.2070 0.1347 9 7 1.3364 -2.3817 -0.1724 10 6 -0.0730 -2.5292 -0.6551 11 6 -0.0665 -3.9187 -1.2437 12 1 0.5443 -3.9383 -2.1463 13 6 -1.2683 -4.8045 -1.4171 14 6 -0.7206 -6.2432 -1.1680 15 6 0.7503 -6.0583 -0.6698 16 6 0.7016 -4.6696 -0.0849 17 1 0.0951 -4.6755 0.8209 18 6 1.8769 -3.7480 0.0877 19 1 2.6579 -3.9904 -0.6331 20 6 2.4141 -3.8406 1.4926 21 7 3.2460 -4.8456 1.8311 22 8 2.0979 -3.0109 2.3187 23 1 -0.4850 0.8400 0.0004 24 1 -0.7762 -2.4628 0.1750 25 1 -0.3012 -1.7855 -1.4187 26 1 -2.0349 -4.5555 -0.6835 27 1 -1.6655 -4.7150 -2.4282 28 1 -1.3158 -6.7452 -0.4052 29 1 -0.7358 -6.8172 -2.0945 30 1 0.9997 -6.7950 0.0938 31 1 1.4534 -6.1073 -1.5013 32 1 3.4992 -5.5090 1.1703 33 1 3.5950 -4.9030 2.7343 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615807094.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:54 Heat of formation + Delta-G solvation = -31.509096 kcal Electronic energy + Delta-G solvation = -16255.328873 eV Core-core repulsion = 13701.590376 eV Total energy + Delta-G solvation = -2553.738498 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.43058 -39.41449 -36.18447 -34.50385 -33.53451 -31.12293 -29.82156 -27.38161 -25.96289 -23.30581 -21.74493 -20.96577 -20.27699 -18.86157 -17.85063 -17.77259 -16.86708 -16.20430 -15.77541 -15.45811 -15.18840 -14.66820 -14.35817 -14.06827 -13.40727 -13.23226 -13.05773 -12.71002 -12.35502 -12.27349 -11.97458 -11.80897 -11.60174 -11.53291 -11.22828 -11.13217 -10.65010 -10.50906 -10.46587 -8.88510 -7.87673 -5.22221 1.40160 1.44026 1.52196 1.86082 2.45415 2.75160 3.19031 3.40333 3.47235 3.91630 4.11151 4.27729 4.36199 4.40795 4.57695 4.66252 4.79921 4.84739 4.96791 5.04331 5.21714 5.26219 5.33081 5.37394 5.50883 5.56062 5.67528 5.76157 6.05792 6.12914 6.66819 7.01940 7.58394 7.69920 8.37927 9.25786 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028909 B = 0.010936 C = 0.008500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.334470 B = 2559.745516 C = 3293.368240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.975 3.025 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.220 4.220 8 H 0.068 0.932 9 N -0.601 5.601 10 C 0.199 3.801 11 C -0.121 4.121 12 H 0.077 0.923 13 C -0.104 4.104 14 C -0.110 4.110 15 C -0.091 4.091 16 C -0.103 4.103 17 H 0.045 0.955 18 C 0.148 3.852 19 H 0.082 0.918 20 C 0.493 3.507 21 N -0.837 5.837 22 O -0.584 6.584 23 H 0.246 0.754 24 H -0.012 1.012 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.416 0.584 33 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.796 -16.533 -4.057 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.349 4.349 8 H 0.085 0.915 9 N -0.326 5.326 10 C 0.075 3.925 11 C -0.140 4.140 12 H 0.096 0.904 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.129 4.129 16 C -0.122 4.122 17 H 0.064 0.936 18 C 0.039 3.961 19 H 0.099 0.901 20 C 0.277 3.723 21 N -0.403 5.403 22 O -0.462 6.462 23 H 0.055 0.945 24 H 0.006 0.994 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.247 0.753 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.454 -15.686 -3.663 16.294 hybrid contribution 0.454 1.343 0.716 1.588 sum 2.908 -14.344 -2.947 14.929 Atomic orbital electron populations 1.70152 1.06339 1.25247 1.58018 1.25682 0.96544 1.01125 1.02641 0.85116 0.77571 0.79417 0.77573 1.20406 1.22319 1.19943 1.19156 0.90537 0.83871 1.41347 0.91451 1.45947 1.11684 0.99888 1.75036 1.20391 0.84417 0.93351 0.94356 1.22382 0.99121 0.94647 0.97877 0.90444 1.21522 0.95804 0.94966 1.01910 1.22913 0.94728 0.94928 1.02219 1.21812 0.98041 0.92248 1.00807 1.21950 0.95193 0.96701 0.98379 0.93628 1.20655 0.96700 0.87655 0.91083 0.90077 1.22191 0.77955 0.80196 0.91953 1.43717 1.49979 1.29645 1.16960 1.90707 1.60037 1.42047 1.53419 0.94475 0.99431 0.94795 0.93096 0.90334 0.90962 0.89088 0.89510 0.89316 0.75315 0.76954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.25 10.90 21.65 0.24 -61.01 16 2 C -0.07 -4.11 5.42 84.86 0.46 -3.65 16 3 Si 0.97 49.37 29.56 68.60 2.03 51.39 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 6 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.22 -13.25 9.23 84.03 0.78 -12.48 16 8 H 0.07 4.01 7.84 -2.91 -0.02 3.98 16 9 N -0.60 -32.48 3.05 -675.77 -2.06 -34.54 16 10 C 0.20 10.28 5.23 85.07 0.44 10.72 16 11 C -0.12 -4.41 2.82 -10.57 -0.03 -4.44 16 12 H 0.08 2.71 8.13 -2.39 -0.02 2.69 16 13 C -0.10 -2.88 6.69 30.74 0.21 -2.67 16 14 C -0.11 -2.19 6.95 32.80 0.23 -1.96 16 15 C -0.09 -1.91 6.70 31.05 0.21 -1.70 16 16 C -0.10 -3.43 2.19 -10.59 -0.02 -3.45 16 17 H 0.05 1.78 7.96 -2.38 -0.02 1.76 16 18 C 0.15 6.06 3.42 42.86 0.15 6.20 16 19 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 20 C 0.49 20.54 7.07 87.66 0.62 21.16 16 21 N -0.84 -22.25 8.87 -173.54 -1.54 -23.79 16 22 O -0.58 -32.28 16.76 -3.02 -0.05 -32.33 16 23 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 24 H -0.01 -0.74 8.09 -2.39 -0.02 -0.75 16 25 H 0.03 1.93 7.22 -2.39 -0.02 1.92 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.42 7.36 8.83 -92.71 -0.82 6.54 16 33 H 0.40 9.50 8.93 -92.71 -0.83 8.68 16 Total: -1.00 -82.15 268.50 1.12 -81.03 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -0.53 Total: 11.53 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 3.04 Total: 7.73 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -3.36 Total: -119.35 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.05 Total: -32.33 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.03 Total: 51.39 kcal Total: -82.15 1.12 -81.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615807094.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.520 kcal (2) G-P(sol) polarization free energy of solvation -82.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds