Wall clock time and date at job start Sun Mar 29 2020 22:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35841 * 126.06202 * 2 1 4 4 C 1.35733 * 107.56480 * 180.02562 * 3 2 1 5 5 N 1.40844 * 126.07279 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99889 * 179.97438 * 5 4 3 7 7 O 1.21603 * 119.99916 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00128 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27942 * 8 6 5 10 10 C 1.50700 * 109.46769 * 179.72341 * 9 8 6 11 11 H 1.07997 * 120.00357 * 359.97438 * 10 9 8 12 12 C 1.37886 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99999 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99952 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.47050 * 90.00071 * 14 12 10 16 16 H 1.48500 * 109.47345 * 209.99736 * 14 12 10 17 17 H 1.48498 * 109.47548 * 330.00215 * 14 12 10 18 18 C 1.40229 * 107.84614 * 0.23977 * 4 3 2 19 19 N 1.30839 * 108.34702 * 359.59086 * 18 4 3 20 20 H 1.09004 * 109.46853 * 90.00861 * 1 2 3 21 21 H 1.08996 * 109.47381 * 210.00187 * 1 2 3 22 22 H 1.08998 * 109.47404 * 330.01222 * 1 2 3 23 23 H 1.08000 * 126.21860 * 359.97438 * 3 2 1 24 24 H 0.97000 * 120.00561 * 0.02562 * 5 4 3 25 25 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 26 26 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 27 27 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 28 28 H 0.97000 * 119.99789 * 179.97438 * 13 12 10 29 29 H 1.08005 * 125.82269 * 179.73459 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2646 1.0981 0.0000 4 6 3.5518 0.6675 -0.0006 5 7 4.6995 1.4840 -0.0013 6 6 5.9252 0.9235 -0.0013 7 8 6.0402 -0.2870 -0.0012 8 7 7.0234 1.7048 -0.0014 9 6 8.3557 1.0956 -0.0076 10 6 9.4033 2.1789 -0.0133 11 1 9.1065 3.2172 -0.0129 12 6 10.7410 1.8443 -0.0192 13 7 11.6552 2.7896 -0.0247 14 14 11.2545 0.0483 -0.0193 15 1 11.3840 -0.4295 -1.4194 16 1 12.5596 -0.0935 0.6748 17 1 10.2281 -0.7602 0.6865 18 6 3.5359 -0.7347 -0.0065 19 7 2.2895 -1.1324 -0.0005 20 1 -0.3633 -0.0002 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8901 0.5136 23 1 1.9359 2.1269 -0.0004 24 1 4.6078 2.4496 -0.0010 25 1 6.9316 2.6705 -0.0019 26 1 8.4768 0.4777 0.8821 27 1 8.4682 0.4767 -0.8978 28 1 12.5962 2.5542 -0.0284 29 1 4.4044 -1.3767 -0.0125 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785650161.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:37 Heat of formation + Delta-G solvation = 56.426104 kcal Electronic energy + Delta-G solvation = -14589.568551 eV Core-core repulsion = 11936.102867 eV Total energy + Delta-G solvation = -2653.465685 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.15589 -39.21063 -34.80907 -34.14242 -32.80163 -32.22750 -29.45346 -27.79207 -26.12048 -22.60769 -21.44364 -20.86361 -20.09628 -18.00943 -17.35972 -16.32534 -15.73572 -15.56142 -14.80724 -14.58238 -14.18259 -13.91371 -13.12887 -12.98939 -12.91571 -12.61684 -12.36940 -12.27402 -10.98544 -10.80887 -10.71834 -10.46082 -9.95640 -9.58265 -9.45175 -9.30417 -8.77938 -8.25499 -7.44443 -6.20720 -4.22958 1.86110 2.44521 2.90054 3.23225 3.29645 3.37022 3.44606 3.87657 4.34812 4.56428 4.77720 4.91349 4.98612 5.14963 5.20433 5.30434 5.69839 5.74004 6.42333 6.71219 6.95702 7.10311 7.13606 7.21982 7.34525 7.50724 7.79787 8.26662 8.62933 8.78941 9.11898 9.39724 10.91120 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.077615 B = 0.005093 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.668082 B = 5496.844684 C = 5837.055024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.384 5.384 3 C -0.003 4.003 4 C 0.039 3.961 5 N -0.667 5.667 6 C 0.697 3.303 7 O -0.591 6.591 8 N -0.717 5.717 9 C 0.238 3.762 10 C -0.544 4.544 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.893 5.893 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.259 1.259 18 C 0.053 3.947 19 N -0.292 5.292 20 H 0.070 0.930 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.174 0.826 24 H 0.404 0.596 25 H 0.394 0.606 26 H 0.026 0.974 27 H 0.021 0.979 28 H 0.268 0.732 29 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.879 -0.835 0.131 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.171 5.171 3 C -0.150 4.150 4 C -0.067 4.067 5 N -0.316 5.316 6 C 0.398 3.602 7 O -0.470 6.470 8 N -0.369 5.369 9 C 0.115 3.885 10 C -0.582 4.582 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.530 5.530 14 Si 0.704 3.296 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.184 1.184 18 C -0.134 4.134 19 N -0.114 5.114 20 H 0.088 0.912 21 H 0.105 0.895 22 H 0.102 0.898 23 H 0.191 0.809 24 H 0.238 0.762 25 H 0.227 0.773 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -20.372 -2.879 0.140 20.575 hybrid contribution 0.842 1.014 -0.042 1.319 sum -19.530 -1.865 0.099 19.619 Atomic orbital electron populations 1.21723 0.74205 1.04113 1.02954 1.48147 1.06123 1.03424 1.59361 1.21717 0.89483 0.93426 1.10367 1.17554 0.85640 0.91197 1.12322 1.42003 1.02717 1.08636 1.78228 1.16002 0.80008 0.85786 0.78452 1.90740 1.85365 1.12468 1.58426 1.45377 1.05493 1.09175 1.76812 1.19411 0.77499 0.94664 0.96878 1.21080 0.89947 0.93777 1.53351 0.90260 1.24785 0.96178 0.97822 0.93862 1.69878 1.01029 1.32643 1.49436 0.86807 0.78538 0.85206 0.79092 1.19836 1.20948 1.18356 1.24621 0.95236 0.93925 0.99626 1.77363 1.01427 1.08427 1.24200 0.91169 0.89548 0.89819 0.80925 0.76227 0.77259 0.95657 0.96123 0.92256 0.77462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.77 11.48 59.85 0.69 1.45 15 2 N -0.38 -4.65 4.04 -67.82 -0.27 -4.93 15 3 C 0.00 -0.03 11.56 -16.67 -0.19 -0.23 15 4 C 0.04 0.58 6.90 -83.86 -0.58 0.00 15 5 N -0.67 -9.91 5.48 -14.39 -0.08 -9.99 15 6 C 0.70 13.56 8.54 -86.92 -0.74 12.82 15 7 O -0.59 -13.43 13.50 5.27 0.07 -13.35 15 8 N -0.72 -14.36 5.55 -66.41 -0.37 -14.73 15 9 C 0.24 5.81 4.50 -5.19 -0.02 5.78 15 10 C -0.54 -14.77 9.83 -34.44 -0.34 -15.11 15 11 H 0.08 2.23 7.84 -52.49 -0.41 1.82 15 12 C 0.08 2.17 5.47 -17.82 -0.10 2.08 15 13 N -0.89 -26.37 13.96 55.43 0.77 -25.59 15 14 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 15 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 17 H -0.26 -6.28 6.54 56.52 0.37 -5.91 15 18 C 0.05 0.91 10.84 -17.23 -0.19 0.72 15 19 N -0.29 -4.60 12.57 30.70 0.39 -4.22 15 20 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 15 21 H 0.09 0.56 8.14 -51.93 -0.42 0.13 15 22 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 15 23 H 0.17 1.27 8.06 -52.49 -0.42 0.84 15 24 H 0.40 4.45 8.84 -40.82 -0.36 4.09 15 25 H 0.39 6.80 8.34 -40.82 -0.34 6.46 15 26 H 0.03 0.65 7.20 -51.93 -0.37 0.28 15 27 H 0.02 0.53 7.57 -51.93 -0.39 0.13 15 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 29 H 0.21 3.88 5.91 -52.48 -0.31 3.57 15 LS Contribution 258.92 15.07 3.90 3.90 Total: -1.00 -34.07 258.92 -4.78 -38.85 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.05 Total: 5.84 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -1.47 Total: 7.52 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.44 Total: -59.46 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.07 Total: -13.35 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -34.07 -4.78 -38.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785650161.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.274 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds