Wall clock time and date at job start Sun Mar 29 2020 21:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.34251 * 125.74165 * 85.00132 * 4 2 1 6 6 C 1.38157 * 107.40457 * 180.02562 * 5 4 2 7 7 C 1.47253 * 126.43100 * 179.97438 * 6 5 4 8 8 O 1.21547 * 120.00300 * 359.97438 * 7 6 5 9 9 O 1.34799 * 119.99864 * 180.02562 * 7 6 5 10 10 C 1.34883 * 116.99948 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99815 * 359.97438 * 10 9 7 12 12 C 1.38766 * 119.99902 * 179.97438 * 10 9 7 13 13 N 1.31437 * 119.99951 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99783 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47024 * 90.00288 * 14 12 10 16 16 H 1.48508 * 109.46897 * 210.00329 * 14 12 10 17 17 H 1.48503 * 109.47283 * 330.00070 * 14 12 10 18 18 C 1.41355 * 107.13623 * 0.02562 * 6 5 4 19 19 N 1.30435 * 108.02120 * 359.71433 * 18 6 5 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.08004 * 126.30027 * 359.97438 * 5 4 2 28 28 H 0.97000 * 120.00178 * 179.97438 * 13 12 10 29 29 H 1.08003 * 125.99128 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1902 -0.1361 -2.4066 6 6 2.6625 -1.1231 -3.2500 7 6 2.9930 -0.9698 -4.6768 8 8 2.8560 0.1089 -5.2199 9 8 3.4464 -2.0261 -5.3809 10 6 3.7309 -1.8177 -6.6828 11 1 3.5919 -0.8381 -7.1157 12 6 4.2023 -2.8619 -7.4658 13 7 4.3710 -4.0541 -6.9389 14 14 4.5956 -2.5733 -9.2690 15 1 6.0150 -2.1589 -9.4058 16 1 4.3704 -3.8275 -10.0316 17 1 3.7141 -1.5042 -9.8030 18 6 2.7678 -2.3081 -2.4866 19 7 2.3885 -2.0382 -1.2681 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.9944 0.8922 -2.6724 28 1 4.7002 -4.7841 -7.4863 29 1 3.1073 -3.2677 -2.8476 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787808690.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:23 Heat of formation + Delta-G solvation = -8.246180 kcal Electronic energy + Delta-G solvation = -14842.104260 eV Core-core repulsion = 12153.541424 eV Total energy + Delta-G solvation = -2688.562836 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.98473 -38.52079 -35.77456 -34.93610 -32.05001 -30.14232 -29.81081 -27.55783 -25.53171 -23.44648 -21.78404 -20.06175 -19.41276 -17.60529 -17.33894 -15.64529 -15.33098 -14.77124 -14.45966 -14.29362 -14.17665 -13.89007 -12.95649 -12.70695 -12.52887 -12.37737 -12.17177 -11.60793 -11.54719 -11.35484 -11.15122 -10.61648 -10.39391 -10.35135 -9.70132 -9.21490 -8.95398 -8.50269 -8.23566 -6.33620 -3.98078 1.95093 2.54530 2.71896 3.22640 3.24212 3.30668 4.03367 4.27364 4.33213 4.65559 4.77649 4.84180 5.01083 5.22253 5.25734 5.34146 5.40542 5.43372 5.62693 5.77594 5.89926 5.93981 6.01491 6.82163 7.11579 7.15451 7.48860 7.94893 8.04319 8.82724 9.15632 9.98798 10.84964 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.063597 B = 0.005847 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.167828 B = 4787.894724 C = 5068.314752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.155 3.845 3 C -0.168 4.168 4 N -0.365 5.365 5 C 0.108 3.892 6 C -0.242 4.242 7 C 0.476 3.524 8 O -0.565 6.565 9 O -0.210 6.210 10 C -0.376 4.376 11 H 0.095 0.905 12 C 0.040 3.960 13 N -0.865 5.865 14 Si 0.943 3.057 15 H -0.274 1.274 16 H -0.279 1.279 17 H -0.267 1.267 18 C 0.098 3.902 19 N -0.312 5.312 20 H 0.064 0.936 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.181 0.819 28 H 0.269 0.731 29 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 6.902 12.726 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 C -0.226 4.226 4 N -0.146 5.146 5 C -0.041 4.041 6 C -0.255 4.255 7 C 0.324 3.676 8 O -0.464 6.464 9 O -0.116 6.116 10 C -0.452 4.452 11 H 0.113 0.887 12 C -0.163 4.163 13 N -0.502 5.502 14 Si 0.768 3.232 15 H -0.200 1.200 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.089 4.089 19 N -0.132 5.132 20 H 0.083 0.917 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.121 0.879 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.198 0.802 28 H 0.078 0.922 29 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.473 6.531 13.814 16.231 hybrid contribution 0.328 0.421 -1.714 1.795 sum -5.146 6.952 12.100 14.873 Atomic orbital electron populations 1.22253 0.93639 1.03430 1.03056 1.21259 0.94829 0.92745 0.85830 1.22232 1.02563 0.94053 1.03719 1.48594 1.49979 1.07866 1.08148 1.22677 0.97379 0.99316 0.84724 1.19650 1.17283 0.94376 0.94146 1.19768 0.78764 0.83359 0.85755 1.90610 1.55763 1.28376 1.71650 1.83918 1.68555 1.35399 1.23770 1.21232 1.43993 0.98278 0.81732 0.88711 1.25311 0.96451 0.94390 1.00183 1.69989 1.42780 1.00760 1.36709 0.85686 0.79052 0.78019 0.80493 1.19955 1.20406 1.19143 1.24302 0.95644 0.99621 0.89381 1.77106 1.22401 0.92672 1.20999 0.91717 0.90557 0.91496 0.87896 0.90020 0.91303 0.91243 0.80172 0.92159 0.78603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.52 37.16 0.35 -1.10 15 2 C 0.15 1.59 3.91 -67.94 -0.27 1.33 15 3 C -0.17 -1.34 8.82 37.15 0.33 -1.01 15 4 N -0.36 -5.53 3.50 -54.29 -0.19 -5.72 15 5 C 0.11 1.85 10.39 -16.52 -0.17 1.68 15 6 C -0.24 -5.15 6.13 -105.08 -0.64 -5.79 15 7 C 0.48 12.55 7.89 34.39 0.27 12.83 15 8 O -0.57 -15.85 16.15 -19.30 -0.31 -16.16 15 9 O -0.21 -6.20 9.59 -21.91 -0.21 -6.41 15 10 C -0.38 -11.37 9.65 30.93 0.30 -11.07 15 11 H 0.10 2.88 6.86 -52.48 -0.36 2.52 15 12 C 0.04 1.15 5.49 -17.53 -0.10 1.06 15 13 N -0.87 -25.64 13.67 55.48 0.76 -24.88 15 14 Si 0.94 21.64 29.55 -169.99 -5.02 16.61 15 15 H -0.27 -6.11 7.11 56.52 0.40 -5.70 15 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 18 C 0.10 1.90 11.87 -16.96 -0.20 1.70 15 19 N -0.31 -5.55 12.50 30.87 0.39 -5.17 15 20 H 0.06 0.60 8.14 -51.93 -0.42 0.17 15 21 H 0.08 0.46 8.14 -51.93 -0.42 0.04 15 22 H 0.07 0.68 8.14 -51.93 -0.42 0.25 15 23 H 0.10 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.08 0.45 8.14 -51.93 -0.42 0.02 15 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 15 26 H 0.07 0.56 7.13 -51.93 -0.37 0.19 15 27 H 0.18 2.64 7.23 -52.48 -0.38 2.26 15 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 29 H 0.20 3.69 8.06 -52.48 -0.42 3.27 15 LS Contribution 266.39 15.07 4.01 4.01 Total: -1.00 -34.84 266.39 -3.91 -38.75 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -3.20 Total: -0.65 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -0.13 Total: -0.39 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.95 Total: -35.77 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.52 Total: -22.57 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.84 -3.91 -38.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787808690.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.504 kcal (2) G-P(sol) polarization free energy of solvation -34.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds