Wall clock time and date at job start Sun Mar 29 2020 21:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.34251 * 125.74165 * 85.00132 * 4 2 1 6 6 C 1.38157 * 107.40457 * 180.02562 * 5 4 2 7 7 C 1.47253 * 126.43100 * 179.97438 * 6 5 4 8 8 O 1.21547 * 120.00300 * 359.97438 * 7 6 5 9 9 O 1.34799 * 119.99864 * 180.02562 * 7 6 5 10 10 C 1.34883 * 116.99948 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99815 * 359.97438 * 10 9 7 12 12 C 1.38766 * 119.99902 * 179.97438 * 10 9 7 13 13 N 1.31437 * 119.99951 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99783 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47024 * 90.00288 * 14 12 10 16 16 H 1.48508 * 109.46897 * 210.00329 * 14 12 10 17 17 H 1.48503 * 109.47283 * 330.00070 * 14 12 10 18 18 C 1.41355 * 107.13623 * 0.02562 * 6 5 4 19 19 N 1.30435 * 108.02120 * 359.71433 * 18 6 5 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.08004 * 126.30027 * 359.97438 * 5 4 2 28 28 H 0.97000 * 120.00178 * 179.97438 * 13 12 10 29 29 H 1.08003 * 125.99128 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1902 -0.1361 -2.4066 6 6 2.6625 -1.1231 -3.2500 7 6 2.9930 -0.9698 -4.6768 8 8 2.8560 0.1089 -5.2199 9 8 3.4464 -2.0261 -5.3809 10 6 3.7309 -1.8177 -6.6828 11 1 3.5919 -0.8381 -7.1157 12 6 4.2023 -2.8619 -7.4658 13 7 4.3710 -4.0541 -6.9389 14 14 4.5956 -2.5733 -9.2690 15 1 6.0150 -2.1589 -9.4058 16 1 4.3704 -3.8275 -10.0316 17 1 3.7141 -1.5042 -9.8030 18 6 2.7678 -2.3081 -2.4866 19 7 2.3885 -2.0382 -1.2681 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.9944 0.8922 -2.6724 28 1 4.7002 -4.7841 -7.4863 29 1 3.1073 -3.2677 -2.8476 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787808690.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:23 Heat of formation + Delta-G solvation = -31.790931 kcal Electronic energy + Delta-G solvation = -14843.125237 eV Core-core repulsion = 12153.541424 eV Total energy + Delta-G solvation = -2689.583813 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.42671 -40.60168 -37.16070 -36.69561 -34.24821 -31.50188 -31.27026 -28.24030 -27.61426 -24.97453 -23.26457 -21.59109 -20.84278 -19.77676 -18.94877 -17.43100 -16.72715 -16.28831 -16.18084 -16.11087 -15.72477 -15.05071 -14.46341 -13.96691 -13.85120 -13.57353 -13.20858 -13.13186 -13.05721 -12.42023 -12.39835 -12.31265 -12.13425 -12.01671 -11.84395 -11.01825 -10.66037 -10.57210 -9.78050 -8.50197 -6.27704 0.45175 1.06544 1.31784 1.38720 1.45529 1.55053 2.16886 2.34819 2.85232 3.06869 3.53819 3.75144 3.89533 3.98942 4.09027 4.33007 4.41077 4.64620 4.72042 4.80720 4.88638 5.02308 5.16448 5.21752 5.24401 5.42818 5.86981 5.90560 6.48092 6.69752 6.94808 7.83748 8.71175 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.063597 B = 0.005847 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.167828 B = 4787.894724 C = 5068.314752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 C -0.164 4.164 4 N -0.346 5.346 5 C 0.139 3.861 6 C -0.289 4.289 7 C 0.477 3.523 8 O -0.590 6.590 9 O -0.239 6.239 10 C -0.419 4.419 11 H 0.083 0.917 12 C -0.005 4.005 13 N -0.903 5.903 14 Si 1.019 2.981 15 H -0.260 1.260 16 H -0.260 1.260 17 H -0.263 1.263 18 C 0.092 3.908 19 N -0.314 5.314 20 H 0.061 0.939 21 H 0.112 0.888 22 H 0.050 0.950 23 H 0.115 0.885 24 H 0.116 0.884 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.209 0.791 28 H 0.278 0.722 29 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 8.161 13.743 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 C -0.222 4.222 4 N -0.125 5.125 5 C -0.013 4.013 6 C -0.302 4.302 7 C 0.326 3.674 8 O -0.490 6.490 9 O -0.146 6.146 10 C -0.495 4.495 11 H 0.100 0.900 12 C -0.205 4.205 13 N -0.540 5.540 14 Si 0.838 3.162 15 H -0.184 1.184 16 H -0.184 1.184 17 H -0.187 1.187 18 C -0.095 4.095 19 N -0.134 5.134 20 H 0.080 0.920 21 H 0.131 0.869 22 H 0.069 0.931 23 H 0.133 0.867 24 H 0.134 0.866 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.226 0.774 28 H 0.088 0.912 29 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.050 7.784 14.897 17.864 hybrid contribution 0.411 0.121 -1.777 1.828 sum -5.639 7.906 13.120 16.323 Atomic orbital electron populations 1.22253 0.91992 1.02921 1.04716 1.21897 0.96097 0.93877 0.83971 1.22275 1.02036 0.92312 1.05573 1.49162 1.47450 1.06935 1.08985 1.22971 0.94409 0.99512 0.84437 1.19516 1.21698 0.96806 0.92215 1.20592 0.76980 0.82408 0.87378 1.90558 1.56730 1.28968 1.72741 1.83936 1.69879 1.36897 1.23935 1.21469 1.46722 0.98647 0.82656 0.89970 1.26553 0.95091 0.93610 1.05285 1.70080 1.43102 1.01769 1.39057 0.84609 0.79348 0.78699 0.73568 1.18443 1.18430 1.18703 1.24213 0.96169 0.99284 0.89788 1.77075 1.22213 0.94301 1.19790 0.92038 0.86944 0.93084 0.86679 0.86564 0.92168 0.91055 0.77438 0.91233 0.79135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.52 71.98 0.69 -1.59 15 2 C 0.14 2.43 3.91 44.99 0.18 2.60 15 3 C -0.16 -1.99 8.82 71.98 0.64 -1.35 15 4 N -0.35 -9.82 3.50 -325.68 -1.14 -10.96 15 5 C 0.14 4.58 10.39 84.30 0.88 5.45 15 6 C -0.29 -12.54 6.13 -20.16 -0.12 -12.66 15 7 C 0.48 26.16 7.89 70.19 0.55 26.72 15 8 O -0.59 -34.12 16.15 19.68 0.32 -33.80 15 9 O -0.24 -14.83 9.59 10.36 0.10 -14.73 15 10 C -0.42 -26.38 9.65 67.95 0.66 -25.73 15 11 H 0.08 5.21 6.86 -2.91 -0.02 5.19 15 12 C -0.01 -0.32 5.49 84.88 0.47 0.15 15 13 N -0.90 -54.61 13.67 21.63 0.30 -54.31 15 14 Si 1.02 44.46 29.55 68.60 2.03 46.48 15 15 H -0.26 -10.69 7.11 99.48 0.71 -9.99 15 16 H -0.26 -10.49 7.11 99.48 0.71 -9.78 15 17 H -0.26 -11.18 7.11 99.48 0.71 -10.48 15 18 C 0.09 3.68 11.87 85.67 1.02 4.69 15 19 N -0.31 -10.93 12.50 -56.24 -0.70 -11.63 15 20 H 0.06 0.94 8.14 -2.39 -0.02 0.92 15 21 H 0.11 0.83 8.14 -2.39 -0.02 0.81 15 22 H 0.05 0.90 8.14 -2.38 -0.02 0.88 15 23 H 0.12 1.79 8.14 -2.39 -0.02 1.77 15 24 H 0.12 0.68 8.14 -2.39 -0.02 0.66 15 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 15 26 H 0.07 0.87 7.13 -2.39 -0.02 0.86 15 27 H 0.21 5.60 7.23 -2.91 -0.02 5.58 15 28 H 0.28 15.23 8.31 -92.71 -0.77 14.46 15 29 H 0.19 7.60 8.06 -2.91 -0.02 7.58 15 Total: -1.00 -78.35 266.39 6.99 -71.36 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.15 Total: 9.31 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 4.94 Total: -1.71 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -1.55 Total: -76.90 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: 0.42 Total: -48.53 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -78.35 6.99 -71.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787808690.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.565 kcal (2) G-P(sol) polarization free energy of solvation -78.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds