Wall clock time and date at job start Sun Mar 29 2020 22:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.34230 * 116.99614 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99717 * 179.97438 * 12 11 10 15 15 H 1.09005 * 109.63540 * 59.58450 * 14 12 11 16 16 C 1.53022 * 109.64291 * 298.94939 * 14 12 11 17 17 C 1.50071 * 110.14428 * 190.87778 * 16 14 12 18 18 C 1.29446 * 124.07356 * 17.13191 * 17 16 14 19 19 C 1.50066 * 124.07705 * 359.53056 * 18 17 16 20 20 C 1.53014 * 110.14903 * 17.13092 * 19 18 17 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.08996 * 109.35813 * 311.08108 * 16 14 12 27 27 H 1.08994 * 109.35959 * 70.67295 * 16 14 12 28 28 H 1.07995 * 117.96142 * 197.10349 * 17 16 14 29 29 H 1.07998 * 117.95862 * 179.54893 * 18 17 16 30 30 H 1.09002 * 109.35171 * 256.91939 * 19 18 17 31 31 H 1.09001 * 109.24671 * 137.27323 * 19 18 17 32 32 H 1.08999 * 109.64240 * 190.88021 * 20 19 18 33 33 H 1.08997 * 109.81863 * 70.35293 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5191 -4.9195 0.0011 12 6 2.2501 -6.0453 0.0007 13 8 3.4567 -5.9821 0.0003 14 6 1.5659 -7.3881 0.0019 15 1 0.9355 -7.4787 -0.8828 16 6 0.7122 -7.5293 1.2639 17 6 0.2398 -8.9459 1.4125 18 6 0.7609 -9.9534 0.7888 19 6 1.9037 -9.8442 -0.1777 20 6 2.6190 -8.5034 0.0011 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 1.3066 -7.2534 2.1349 27 1 -0.1502 -6.8665 1.1929 28 1 -0.5860 -9.1367 2.0818 29 1 0.3473 -10.9334 0.9754 30 1 1.5233 -9.9179 -1.1965 31 1 2.6074 -10.6564 0.0048 32 1 3.3168 -8.3479 -0.8216 33 1 3.1605 -8.4967 0.9470 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805860632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:11 Heat of formation + Delta-G solvation = -100.131266 kcal Electronic energy + Delta-G solvation = -14924.090453 eV Core-core repulsion = 12335.083523 eV Total energy + Delta-G solvation = -2589.006929 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.28002 -38.09537 -36.00423 -33.34674 -31.60018 -30.93173 -30.09648 -25.36586 -23.96643 -23.04435 -20.99166 -20.19175 -18.08836 -17.38507 -16.53990 -16.02372 -15.80741 -15.22268 -14.51479 -14.04615 -13.77069 -13.52883 -13.10026 -12.64164 -12.39631 -12.34771 -12.30586 -11.21789 -11.15790 -10.99461 -10.91254 -10.73873 -10.68571 -10.47939 -10.06414 -9.62718 -9.56621 -9.28580 -9.13828 -8.44103 -6.10217 -4.14547 2.14457 2.59601 3.19971 3.28724 3.34965 3.39828 4.38831 4.51573 4.58745 4.81512 5.07137 5.16193 5.23846 5.26361 5.34056 5.39699 5.62301 5.70542 5.80175 5.91755 6.04915 6.10269 6.12973 6.17001 6.48491 6.65049 6.79383 7.03155 7.56647 7.62952 7.87292 8.20583 8.29007 8.91042 9.49872 11.01299 Molecular weight = 224.12amu Principal moments of inertia in cm(-1) A = 0.065853 B = 0.004711 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.088214 B = 5942.338533 C = 6243.202200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.074 3.926 11 O -0.356 6.356 12 C 0.458 3.542 13 O -0.518 6.518 14 C -0.081 4.081 15 H 0.108 0.892 16 C -0.084 4.084 17 C -0.147 4.147 18 C -0.162 4.162 19 C -0.090 4.090 20 C -0.104 4.104 21 H 0.263 0.737 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.598 -17.889 0.924 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.002 3.998 11 O -0.272 6.272 12 C 0.301 3.699 13 O -0.408 6.408 14 C -0.100 4.100 15 H 0.126 0.874 16 C -0.121 4.121 17 C -0.165 4.165 18 C -0.180 4.180 19 C -0.127 4.127 20 C -0.142 4.142 21 H 0.073 0.927 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.794 -17.694 0.933 17.736 hybrid contribution 0.478 0.993 0.016 1.103 sum 1.272 -16.700 0.949 16.776 Atomic orbital electron populations 1.69978 1.06091 1.26969 1.49822 1.24982 0.94914 0.99375 0.94860 0.86472 0.79775 0.82824 0.78247 1.20478 1.21038 1.19719 1.20989 0.93182 0.90165 1.52154 0.92281 1.19163 0.94183 0.89059 0.98849 1.23630 0.96372 0.78980 1.00866 1.86529 1.42416 1.15805 1.82429 1.23542 0.86511 0.87270 0.72554 1.90614 1.15877 1.88337 1.45936 1.21101 0.98249 0.89143 1.01551 0.87440 1.20411 0.99931 0.95375 0.96358 1.22033 1.00040 0.94165 1.00310 1.22066 0.98374 0.98516 0.99074 1.20472 0.96022 0.97403 0.98799 1.21507 0.96626 0.92298 1.03760 0.92719 0.95385 0.95347 0.92394 0.92393 0.90242 0.89184 0.87439 0.87874 0.90648 0.90647 0.90543 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 10 C 0.07 1.68 5.40 37.16 0.20 1.88 16 11 O -0.36 -7.21 10.17 -39.26 -0.40 -7.61 16 12 C 0.46 8.13 7.23 36.01 0.26 8.39 16 13 O -0.52 -10.43 15.65 -18.75 -0.29 -10.72 16 14 C -0.08 -1.06 2.69 -91.55 -0.25 -1.30 16 15 H 0.11 1.27 8.13 -51.93 -0.42 0.85 16 16 C -0.08 -0.99 5.38 -28.18 -0.15 -1.14 16 17 C -0.15 -1.45 9.80 -35.90 -0.35 -1.80 16 18 C -0.16 -1.47 9.80 -35.90 -0.35 -1.82 16 19 C -0.09 -0.80 6.12 -28.18 -0.17 -0.97 16 20 C -0.10 -1.19 4.69 -26.52 -0.12 -1.32 16 21 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 25 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 26 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.11 0.91 8.06 -52.49 -0.42 0.48 16 29 H 0.10 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16 33 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 LS Contribution 282.41 15.07 4.26 4.26 Total: -1.00 -30.90 282.41 -7.24 -38.14 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.02 Total: -3.58 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.50 Total: -11.21 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.69 Total: -18.33 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.90 -7.24 -38.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805860632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.992 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds