Wall clock time and date at job start Sun Mar 29 2020 21:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46895 * 2 1 4 4 C 1.52992 * 109.47222 * 239.99920 * 2 1 3 5 5 C 1.50700 * 109.47257 * 65.00044 * 4 2 1 6 6 O 1.21212 * 119.99966 * 0.02562 * 5 4 2 7 7 O 1.34314 * 120.00115 * 180.02562 * 5 4 2 8 8 C 1.34912 * 117.00123 * 179.97438 * 7 5 4 9 9 H 1.08006 * 120.00252 * 359.97438 * 8 7 5 10 10 C 1.38756 * 120.00400 * 179.97438 * 8 7 5 11 11 N 1.31448 * 119.99474 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00384 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47053 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47423 * 120.00222 * 12 10 8 15 15 H 1.48502 * 109.47280 * 239.99938 * 12 10 8 16 16 N 1.46498 * 109.46860 * 119.99951 * 2 1 3 17 17 C 1.36888 * 126.39597 * 239.71387 * 16 2 1 18 18 C 1.34669 * 106.81557 * 179.84461 * 17 16 2 19 19 N 1.34126 * 108.02007 * 0.41731 * 18 17 16 20 20 C 1.30497 * 109.25775 * 359.73659 * 19 18 17 21 21 H 1.08998 * 109.47147 * 300.00359 * 1 2 3 22 22 H 1.09005 * 109.46613 * 60.00132 * 1 2 3 23 23 H 1.08993 * 109.47263 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47330 * 305.00067 * 4 2 1 25 25 H 1.08997 * 109.47279 * 185.00554 * 4 2 1 26 26 H 0.97005 * 119.99363 * 180.02562 * 11 10 8 27 27 H 1.07996 * 126.59190 * 359.97438 * 17 16 2 28 28 H 1.08001 * 125.98900 * 180.11831 * 18 17 16 29 29 H 1.08004 * 125.64754 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4765 6 8 1.0121 1.0868 -2.3633 7 8 1.9834 -0.3904 -3.6959 8 6 1.5950 0.3533 -4.7524 9 1 1.0347 1.2632 -4.5956 10 6 1.9153 -0.0507 -6.0406 11 7 2.5968 -1.1584 -6.2316 12 14 1.3782 0.9794 -7.5034 13 1 0.6306 2.1692 -7.0231 14 1 2.5747 1.4209 -8.2640 15 1 0.5026 0.1672 -8.3860 16 7 2.0183 -0.6906 1.1962 17 6 2.8129 -0.1569 2.1747 18 6 3.0184 -1.1294 3.0833 19 7 2.3746 -2.2297 2.6662 20 6 1.7734 -1.9743 1.5365 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6054 -1.7198 -1.2951 25 1 3.1263 -0.7995 -1.2055 26 1 2.8210 -1.4406 -7.1322 27 1 3.1990 0.8510 2.2121 28 1 3.6034 -1.0406 3.9868 29 1 1.1787 -2.6738 0.9677 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845278890.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:17 Heat of formation + Delta-G solvation = -21.843535 kcal Electronic energy + Delta-G solvation = -14931.122657 eV Core-core repulsion = 12241.970195 eV Total energy + Delta-G solvation = -2689.152462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.98498 -39.26720 -36.27867 -34.73275 -32.26485 -30.83164 -29.16253 -28.12985 -25.33404 -23.29131 -21.27165 -20.77695 -19.56832 -17.90717 -17.33526 -16.19641 -15.39473 -15.19187 -14.76604 -14.43346 -14.11452 -13.72545 -13.55633 -13.24968 -12.87075 -12.34118 -12.01788 -11.66098 -11.39569 -11.25861 -11.10256 -10.48184 -10.45743 -9.92934 -9.87326 -9.54681 -9.16966 -8.68726 -8.42589 -6.51740 -4.20427 2.17040 2.79763 3.00564 3.13420 3.20405 3.27629 3.36093 3.86502 4.40749 4.65945 4.81111 4.88823 5.00462 5.04521 5.20480 5.48642 5.65012 5.68385 5.78047 5.88032 5.93583 6.32508 6.44291 6.59621 6.82930 7.27317 7.30897 7.83189 8.17241 8.55630 8.96667 9.70261 10.65815 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.064374 B = 0.005554 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.851716 B = 5040.431248 C = 5237.053582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 H 0.109 0.891 4 C -0.115 4.115 5 C 0.400 3.600 6 O -0.555 6.555 7 O -0.210 6.210 8 C -0.385 4.385 9 H 0.098 0.902 10 C 0.043 3.957 11 N -0.862 5.862 12 Si 0.944 3.056 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.275 1.275 16 N -0.449 5.449 17 C -0.055 4.055 18 C -0.038 4.038 19 N -0.501 5.501 20 C 0.183 3.817 21 H 0.058 0.942 22 H 0.103 0.897 23 H 0.059 0.941 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.271 0.729 27 H 0.171 0.829 28 H 0.166 0.834 29 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 1.196 10.628 10.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.127 0.873 4 C -0.153 4.153 5 C 0.247 3.753 6 O -0.454 6.454 7 O -0.116 6.116 8 C -0.461 4.461 9 H 0.116 0.884 10 C -0.162 4.162 11 N -0.498 5.498 12 Si 0.768 3.232 13 H -0.189 1.189 14 H -0.201 1.201 15 H -0.201 1.201 16 N -0.132 5.132 17 C -0.189 4.189 18 C -0.186 4.186 19 N -0.219 5.219 20 C -0.100 4.100 21 H 0.077 0.923 22 H 0.121 0.879 23 H 0.078 0.922 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.189 0.811 28 H 0.183 0.817 29 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.198 0.645 10.734 10.820 hybrid contribution -0.094 1.198 -1.172 1.679 sum -1.292 1.843 9.562 9.824 Atomic orbital electron populations 1.22294 0.92376 1.02974 1.04623 1.21216 0.96310 0.96882 0.81102 0.87300 1.21373 1.03590 1.00197 0.90165 1.22648 0.81296 0.85538 0.85841 1.90537 1.41685 1.25903 1.87273 1.83865 1.65479 1.49331 1.12916 1.21300 1.36153 1.06656 0.81946 0.88425 1.25377 0.96062 0.96709 0.98052 1.70005 1.35752 1.21300 1.22755 0.85599 0.78575 0.79297 0.79701 1.18895 1.20098 1.20076 1.45845 1.37324 1.11481 1.18509 1.22770 1.02313 1.01416 0.92372 1.22249 1.05118 0.89804 1.01415 1.70283 1.12734 1.28147 1.10776 1.24893 1.03776 0.85516 0.95770 0.92270 0.87886 0.92241 0.88277 0.88391 0.91959 0.81136 0.81655 0.78225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 8.98 37.16 0.33 -1.92 15 2 C 0.15 2.09 2.70 -67.93 -0.18 1.90 15 3 H 0.11 1.57 7.90 -51.93 -0.41 1.16 15 4 C -0.11 -1.88 5.28 -27.89 -0.15 -2.03 15 5 C 0.40 9.01 7.62 36.01 0.27 9.28 15 6 O -0.56 -13.26 13.20 -19.05 -0.25 -13.51 15 7 O -0.21 -5.72 9.75 -20.69 -0.20 -5.92 15 8 C -0.38 -10.93 9.64 30.92 0.30 -10.63 15 9 H 0.10 2.78 6.86 -52.48 -0.36 2.42 15 10 C 0.04 1.17 5.49 -17.52 -0.10 1.07 15 11 N -0.86 -24.65 13.67 55.48 0.76 -23.89 15 12 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 15 13 H -0.26 -5.69 7.11 56.52 0.40 -5.29 15 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 15 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 16 N -0.45 -6.03 2.62 -111.46 -0.29 -6.32 15 17 C -0.06 -0.69 11.54 -16.56 -0.19 -0.88 15 18 C -0.04 -0.50 11.87 -17.81 -0.21 -0.71 15 19 N -0.50 -7.63 11.25 -14.67 -0.16 -7.79 15 20 C 0.18 2.51 11.65 -90.38 -1.05 1.46 15 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 22 H 0.10 1.68 5.95 -51.93 -0.31 1.37 15 23 H 0.06 0.73 7.95 -51.93 -0.41 0.32 15 24 H 0.10 1.48 8.08 -51.93 -0.42 1.06 15 25 H 0.10 1.56 8.14 -51.93 -0.42 1.14 15 26 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 27 H 0.17 1.66 8.06 -52.49 -0.42 1.24 15 28 H 0.17 1.73 8.06 -52.49 -0.42 1.31 15 29 H 0.20 2.22 8.06 -52.48 -0.42 1.79 15 LS Contribution 261.65 15.07 3.94 3.94 Total: -1.00 -32.30 261.65 -5.37 -37.66 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.16 Total: 2.68 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -0.98 Total: -2.47 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.30 Total: -38.00 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.45 Total: -19.43 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.30 -5.37 -37.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845278890.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.821 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds