Wall clock time and date at job start Sun Mar 29 2020 21:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47410 * 2 1 4 4 C 1.34242 * 125.74690 * 125.29800 * 3 2 1 5 5 C 1.38160 * 107.40403 * 180.15523 * 4 3 2 6 6 C 1.47253 * 126.43173 * 179.83286 * 5 4 3 7 7 O 1.21550 * 119.99896 * 179.68904 * 6 5 4 8 8 O 1.34787 * 119.99976 * 359.68864 * 6 5 4 9 9 C 1.34894 * 116.99993 * 180.02562 * 8 6 5 10 10 H 1.07997 * 120.00240 * 0.02562 * 9 8 6 11 11 C 1.38762 * 119.99998 * 179.73031 * 9 8 6 12 12 N 1.31451 * 120.00295 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00176 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47517 * 89.99224 * 13 11 9 15 15 H 1.48504 * 109.47269 * 209.99549 * 13 11 9 16 16 H 1.48502 * 109.46736 * 329.99450 * 13 11 9 17 17 C 1.41355 * 107.13808 * 359.57431 * 5 4 3 18 18 C 1.50692 * 125.99254 * 180.28308 * 17 5 4 19 19 N 1.30434 * 108.01469 * 0.25865 * 17 5 4 20 20 H 1.08993 * 109.47378 * 180.02562 * 1 2 3 21 21 H 1.09010 * 109.46728 * 299.99963 * 1 2 3 22 22 H 1.08993 * 109.46985 * 59.99945 * 1 2 3 23 23 H 1.08994 * 109.47047 * 239.99723 * 2 1 3 24 24 H 1.09003 * 109.46960 * 120.00173 * 2 1 3 25 25 H 1.08003 * 126.29711 * 0.02562 * 4 3 2 26 26 H 0.96995 * 120.00343 * 180.02562 * 12 11 9 27 27 H 1.09002 * 109.47233 * 89.99737 * 18 17 5 28 28 H 1.09001 * 109.47446 * 209.99498 * 18 17 5 29 29 H 1.09002 * 109.47080 * 329.99690 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8734 1.9107 0.8892 5 6 3.0710 3.2318 0.5364 6 6 3.9310 4.2035 1.2324 7 8 4.0237 5.3413 0.8150 8 8 4.6155 3.8312 2.3322 9 6 5.3843 4.7698 2.9219 10 1 5.4303 5.7671 2.5101 11 6 6.1113 4.4555 4.0613 12 7 6.0504 3.2434 4.5664 13 14 7.1753 5.7554 4.8784 14 1 6.3735 6.4857 5.8928 15 1 8.3340 5.1028 5.5395 16 1 7.6646 6.7110 3.8525 17 6 2.2972 3.4739 -0.6215 18 6 2.2054 4.7796 -1.3683 19 7 1.6771 2.3688 -0.9306 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 3.3224 1.3987 1.7275 26 1 6.5583 3.0239 5.3630 27 1 2.9770 4.8133 -2.1374 28 1 1.2238 4.8632 -1.8346 29 1 2.3491 5.6066 -0.6729 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860203890.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:00 Heat of formation + Delta-G solvation = -34.231635 kcal Electronic energy + Delta-G solvation = -14954.584283 eV Core-core repulsion = 12264.894632 eV Total energy + Delta-G solvation = -2689.689650 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.40395 -40.55421 -37.16909 -35.66868 -34.24973 -32.43166 -31.20658 -28.80969 -27.42677 -24.80804 -23.35515 -21.88675 -20.37254 -19.73273 -18.62868 -17.58026 -16.83938 -16.38277 -16.15233 -16.06474 -15.25017 -14.95627 -14.46760 -14.06998 -13.83701 -13.58996 -13.19718 -13.12236 -13.00690 -12.83275 -12.37882 -12.29777 -12.14625 -11.95862 -11.79138 -10.94236 -10.64672 -10.34521 -9.71629 -8.50127 -6.26305 0.46826 1.03259 1.35211 1.40571 1.44765 1.54477 2.17236 2.34838 2.91846 3.07321 3.38510 3.77460 3.97599 4.08784 4.22108 4.36652 4.55262 4.75040 4.78152 4.79743 4.92496 4.99085 5.06626 5.23047 5.25288 5.54551 5.88593 5.91094 6.52720 6.72849 6.96116 7.85298 8.71160 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.038206 B = 0.007031 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.685702 B = 3981.385896 C = 4640.022964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 N -0.353 5.353 4 C 0.130 3.870 5 C -0.295 4.295 6 C 0.476 3.524 7 O -0.580 6.580 8 O -0.240 6.240 9 C -0.416 4.416 10 H 0.081 0.919 11 C -0.003 4.003 12 N -0.902 5.902 13 Si 1.016 2.984 14 H -0.261 1.261 15 H -0.260 1.260 16 H -0.265 1.265 17 C 0.118 3.882 18 C -0.071 4.071 19 N -0.310 5.310 20 H 0.108 0.892 21 H 0.049 0.951 22 H 0.056 0.944 23 H 0.105 0.895 24 H 0.127 0.873 25 H 0.205 0.795 26 H 0.278 0.722 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.125 -7.748 -6.492 12.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.005 4.005 3 N -0.131 5.131 4 C -0.023 4.023 5 C -0.307 4.307 6 C 0.326 3.674 7 O -0.478 6.478 8 O -0.149 6.149 9 C -0.492 4.492 10 H 0.098 0.902 11 C -0.203 4.203 12 N -0.540 5.540 13 Si 0.835 3.165 14 H -0.186 1.186 15 H -0.184 1.184 16 H -0.189 1.189 17 C -0.049 4.049 18 C -0.129 4.129 19 N -0.132 5.132 20 H 0.126 0.874 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.123 0.877 24 H 0.145 0.855 25 H 0.222 0.778 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.894 -8.347 -7.239 14.184 hybrid contribution 1.114 0.964 1.034 1.800 sum -7.780 -7.384 -6.204 12.391 Atomic orbital electron populations 1.22025 0.92740 1.04497 1.02369 1.22334 0.96994 0.74679 1.06444 1.48884 1.33276 1.11514 1.19434 1.23471 0.91140 0.93003 0.94663 1.19576 1.12001 0.94911 1.04250 1.20575 0.80024 0.86582 0.80256 1.90540 1.66716 1.22615 1.67945 1.83925 1.52016 1.42137 1.36808 1.21431 1.24642 0.92884 1.10267 0.90153 1.26463 0.98134 1.00137 0.95597 1.70055 1.41052 1.20629 1.22281 0.84650 0.77232 0.76515 0.78120 1.18574 1.18379 1.18919 1.22694 0.92830 0.96185 0.93163 1.20303 1.03758 0.89496 0.99338 1.76955 1.25062 0.96699 1.14516 0.87380 0.93144 0.92530 0.87688 0.85486 0.77842 0.91281 0.89622 0.88728 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.09 71.98 0.73 -1.77 15 2 C 0.11 2.01 7.21 86.38 0.62 2.63 15 3 N -0.35 -10.42 3.65 -346.22 -1.26 -11.69 15 4 C 0.13 4.61 11.29 84.31 0.95 5.56 15 5 C -0.29 -12.95 6.13 -20.16 -0.12 -13.07 15 6 C 0.48 26.03 7.89 70.19 0.55 26.59 15 7 O -0.58 -33.48 14.17 19.67 0.28 -33.20 15 8 O -0.24 -14.57 9.57 10.37 0.10 -14.47 15 9 C -0.42 -25.79 9.65 67.95 0.66 -25.13 15 10 H 0.08 5.06 6.86 -2.91 -0.02 5.04 15 11 C 0.00 -0.20 5.49 84.88 0.47 0.27 15 12 N -0.90 -52.99 13.67 21.63 0.30 -52.69 15 13 Si 1.02 43.86 29.55 68.60 2.03 45.89 15 14 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 15 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 16 H -0.26 -11.26 7.11 99.48 0.71 -10.56 15 17 C 0.12 4.53 7.27 43.53 0.32 4.85 15 18 C -0.07 -2.35 9.92 71.23 0.71 -1.64 15 19 N -0.31 -10.57 12.33 -46.65 -0.58 -11.15 15 20 H 0.11 0.99 8.14 -2.39 -0.02 0.97 15 21 H 0.05 0.92 8.14 -2.38 -0.02 0.90 15 22 H 0.06 1.07 8.14 -2.39 -0.02 1.05 15 23 H 0.10 1.52 8.14 -2.39 -0.02 1.50 15 24 H 0.13 1.59 8.06 -2.39 -0.02 1.57 15 25 H 0.20 6.54 8.06 -2.91 -0.02 6.52 15 26 H 0.28 14.76 8.31 -92.71 -0.77 13.99 15 27 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 28 H 0.09 2.53 8.14 -2.39 -0.02 2.51 15 29 H 0.07 2.79 6.55 -2.39 -0.02 2.78 15 Total: -1.00 -76.62 265.88 6.89 -69.73 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.16 Total: 9.29 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 4.88 Total: -1.71 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -1.54 Total: -75.53 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: 0.38 Total: -47.67 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -76.62 6.89 -69.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860203890.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.495 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds