Wall clock time and date at job start Sun Mar 29 2020 22:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99788 * 2 1 4 4 H 1.48495 * 109.47436 * 355.36027 * 3 2 1 5 5 H 1.48503 * 109.47270 * 115.36332 * 3 2 1 6 6 H 1.48505 * 109.47057 * 235.35931 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46500 * 114.39503 * 272.68209 * 11 10 9 13 13 C 1.34775 * 119.99438 * 248.58795 * 12 11 10 14 14 O 1.21283 * 120.00677 * 359.97438 * 13 12 11 15 15 C 1.50709 * 119.99887 * 180.02562 * 13 12 11 16 16 C 1.53783 * 113.61101 * 279.13448 * 15 13 12 17 17 C 1.53958 * 87.01577 * 220.04432 * 16 15 13 18 18 C 1.53778 * 113.61575 * 181.52557 * 15 13 12 19 19 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 20 20 H 0.97005 * 119.99783 * 184.87568 * 1 2 3 21 21 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 22 22 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 23 23 H 1.08997 * 114.26559 * 139.79607 * 11 10 9 24 24 H 0.96999 * 120.00177 * 68.58488 * 12 11 10 25 25 H 1.08998 * 112.84540 * 50.32692 * 15 13 12 26 26 H 1.08997 * 113.61196 * 334.56739 * 16 15 13 27 27 H 1.08998 * 113.61447 * 105.47190 * 16 15 13 28 28 H 1.08994 * 113.53902 * 270.81047 * 17 16 15 29 29 H 1.08999 * 113.66379 * 139.92748 * 17 16 15 30 30 H 1.09004 * 113.61277 * 254.52787 * 18 15 13 31 31 H 1.09006 * 113.61305 * 25.34683 * 18 15 13 32 32 H 1.09003 * 113.46756 * 321.86183 * 19 9 7 33 33 H 1.09002 * 113.46950 * 92.29471 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1132 5 1 3.0170 1.7466 1.2651 6 1 3.1868 1.6485 -1.1519 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4675 -1.3241 1.7649 13 6 6.5829 -0.9333 2.4128 14 8 7.5356 -0.5211 1.7857 15 6 6.6466 -1.0096 3.9166 16 6 5.9604 0.1717 4.6228 17 6 7.1326 0.1515 5.6208 18 6 7.9705 -0.4931 4.5040 19 6 4.4119 -2.2308 -0.3351 20 1 -0.4850 -0.8371 0.0714 21 1 4.6555 0.1232 -1.2580 22 1 4.2793 0.6479 0.4390 23 1 6.3880 -1.2388 -0.1696 24 1 4.7057 -1.6541 2.2664 25 1 6.3474 -1.9835 4.3040 26 1 5.9178 1.0771 4.0176 27 1 5.0003 -0.0852 5.0704 28 1 6.9656 -0.5043 6.4752 29 1 7.4790 1.1440 5.9089 30 1 8.6308 -1.2859 4.8558 31 1 8.4792 0.2293 3.8656 32 1 4.2436 -3.1278 0.2608 33 1 4.6311 -2.4530 -1.3795 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030044917.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:58 Heat of formation + Delta-G solvation = 18.773340 kcal Electronic energy + Delta-G solvation = -15589.672069 eV Core-core repulsion = 13038.113981 eV Total energy + Delta-G solvation = -2551.558088 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.46695 -40.05335 -38.11677 -35.10262 -34.03497 -29.98738 -27.65143 -27.04765 -26.51734 -24.43338 -22.24242 -21.16195 -20.25829 -19.54058 -18.53695 -17.52754 -16.77572 -16.48653 -15.98867 -15.72484 -15.38619 -15.19766 -14.73325 -13.80600 -13.64343 -13.39701 -13.33675 -12.92363 -12.80703 -12.49292 -12.14189 -12.03076 -11.42622 -11.37932 -11.29551 -11.26015 -11.03454 -10.71189 -9.97002 -9.22702 -8.65476 -5.47802 1.36796 1.43150 1.57684 1.64142 2.19355 2.49305 2.92225 3.22311 3.52705 3.59119 3.69164 3.81740 3.93157 4.18970 4.29073 4.34735 4.61065 4.65332 4.70681 4.75508 4.80212 4.86479 4.93983 5.04245 5.10305 5.16316 5.20231 5.50666 5.61102 5.93858 6.58478 6.68831 7.23260 7.31105 8.25150 8.90167 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031975 B = 0.008112 C = 0.007339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.471359 B = 3450.746650 C = 3814.472720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.081 4.081 3 Si 1.108 2.892 4 H -0.306 1.306 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.286 4.286 8 H 0.057 0.943 9 N -0.654 5.654 10 C 0.075 3.925 11 C 0.118 3.882 12 N -0.696 5.696 13 C 0.520 3.480 14 O -0.582 6.582 15 C -0.137 4.137 16 C -0.132 4.132 17 C -0.126 4.126 18 C -0.118 4.118 19 C 0.118 3.882 20 H 0.248 0.752 21 H 0.064 0.936 22 H 0.042 0.958 23 H 0.118 0.882 24 H 0.410 0.590 25 H 0.138 0.862 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.768 -2.507 9.946 18.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.273 4.273 3 Si 0.936 3.064 4 H -0.234 1.234 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.414 4.414 8 H 0.075 0.925 9 N -0.384 5.384 10 C -0.051 4.051 11 C 0.010 3.990 12 N -0.345 5.345 13 C 0.309 3.691 14 O -0.463 6.463 15 C -0.158 4.158 16 C -0.170 4.170 17 C -0.163 4.163 18 C -0.156 4.156 19 C -0.008 4.008 20 H 0.057 0.943 21 H 0.081 0.919 22 H 0.060 0.940 23 H 0.136 0.864 24 H 0.246 0.754 25 H 0.156 0.844 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.011 -0.622 9.463 18.609 hybrid contribution -1.004 -1.913 -0.242 2.174 sum 15.007 -2.535 9.221 17.795 Atomic orbital electron populations 1.71018 1.06624 1.28744 1.55304 1.26814 0.96446 1.04153 0.99879 0.83210 0.72972 0.72544 0.77675 1.23440 1.20709 1.19221 1.19997 0.81041 0.94480 1.45835 0.92479 1.46150 1.01597 1.04708 1.85902 1.23484 0.87999 0.94478 0.99165 1.22230 0.98327 0.96715 0.81683 1.45632 1.17392 1.65081 1.06402 1.21215 0.81304 0.75381 0.91247 1.90630 1.37761 1.48008 1.69866 1.22973 1.01594 1.02645 0.88621 1.22900 0.99640 0.96403 0.98030 1.22842 0.94705 1.02172 0.96630 1.22777 0.94786 1.00830 0.97163 1.22892 0.85353 0.93298 0.99258 0.94264 0.91872 0.94036 0.86432 0.75441 0.84387 0.91679 0.89603 0.87691 0.90476 0.89521 0.90934 0.92117 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.46 13.70 21.65 0.30 -62.17 16 2 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16 3 Si 1.11 54.81 25.13 68.60 1.72 56.53 16 4 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 5 H -0.28 -12.98 6.65 99.48 0.66 -12.32 16 6 H -0.27 -12.12 6.13 99.48 0.61 -11.51 16 7 C -0.29 -16.21 11.08 84.03 0.93 -15.28 16 8 H 0.06 3.46 8.05 -2.91 -0.02 3.43 16 9 N -0.65 -30.47 3.70 -737.96 -2.73 -33.20 16 10 C 0.07 3.06 5.54 83.27 0.46 3.53 16 11 C 0.12 3.96 4.62 45.55 0.21 4.17 16 12 N -0.70 -21.56 5.40 -441.50 -2.38 -23.94 16 13 C 0.52 15.56 7.35 87.66 0.64 16.20 16 14 O -0.58 -21.19 15.50 -3.04 -0.05 -21.24 16 15 C -0.14 -2.95 4.14 -11.01 -0.05 -2.99 16 16 C -0.13 -2.72 7.64 31.18 0.24 -2.48 16 17 C -0.13 -1.97 8.09 31.18 0.25 -1.72 16 18 C -0.12 -2.28 7.40 31.12 0.23 -2.05 16 19 C 0.12 4.19 8.44 83.18 0.70 4.89 16 20 H 0.25 15.92 8.73 -92.70 -0.81 15.11 16 21 H 0.06 2.49 7.73 -2.39 -0.02 2.47 16 22 H 0.04 1.81 4.65 -2.39 -0.01 1.80 16 23 H 0.12 3.70 7.45 -2.39 -0.02 3.69 16 24 H 0.41 12.18 8.76 -92.71 -0.81 11.37 16 25 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 1.61 8.09 -2.39 -0.02 1.59 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.74 7.45 -2.38 -0.02 1.72 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -70.86 271.02 1.07 -69.79 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.11 Total: 14.28 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 4.09 Total: -0.06 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -4.81 Total: -119.31 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.05 Total: -21.24 kcal Atomic # 14 Polarization: 54.81 SS G_CDS: 1.72 Total: 56.53 kcal Total: -70.86 1.07 -69.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030044917.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.567 kcal (2) G-P(sol) polarization free energy of solvation -70.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds