Wall clock time and date at job start Sun Mar 29 2020 21:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33319 * 126.81212 * 2 1 4 4 N 1.28513 * 109.43697 * 179.97438 * 3 2 1 5 5 N 1.28706 * 110.64086 * 359.97438 * 4 3 2 6 6 H 0.97005 * 126.04198 * 180.02562 * 5 4 3 7 7 C 1.37000 * 126.81306 * 179.67779 * 2 1 3 8 8 C 1.47231 * 127.19089 * 0.02562 * 7 2 1 9 9 O 1.21621 * 120.00097 * 359.97438 * 8 7 2 10 10 N 1.34774 * 120.00257 * 180.02562 * 8 7 2 11 11 C 1.46500 * 120.00458 * 180.02562 * 10 8 7 12 12 H 1.09006 * 109.46649 * 324.99098 * 11 10 8 13 13 C 1.52993 * 109.47476 * 84.98989 * 11 10 8 14 14 C 1.50696 * 109.47434 * 204.99689 * 11 10 8 15 15 H 1.08006 * 120.00134 * 359.97438 * 14 11 10 16 16 C 1.37871 * 120.00507 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00569 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99974 * 359.97438 * 16 14 11 19 19 H 1.48500 * 109.46921 * 90.00247 * 18 16 14 20 20 H 1.48494 * 109.47531 * 210.00582 * 18 16 14 21 21 H 1.48508 * 109.47126 * 330.00534 * 18 16 14 22 22 H 1.09001 * 109.46953 * 90.02796 * 1 2 3 23 23 H 1.09000 * 109.47318 * 210.02394 * 1 2 3 24 24 H 1.09000 * 109.47161 * 330.03025 * 1 2 3 25 25 H 0.97007 * 119.99976 * 359.97438 * 10 8 7 26 26 H 1.09000 * 109.47473 * 300.00497 * 13 11 10 27 27 H 1.09006 * 109.47092 * 60.00380 * 13 11 10 28 28 H 1.09008 * 109.47210 * 180.02562 * 13 11 10 29 29 H 0.96998 * 120.00181 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6057 -0.6014 0.0015 6 1 4.4213 -1.1265 0.0023 7 6 2.3280 -1.0968 0.0062 8 6 1.9222 -2.5121 0.0136 9 8 0.7422 -2.8064 0.0152 10 7 2.8585 -3.4815 0.0197 11 6 2.4548 -4.8898 0.0265 12 1 1.5449 -5.0040 0.6157 13 6 2.1948 -5.3528 -1.4083 14 6 3.5536 -5.7244 0.6324 15 1 4.4620 -5.2531 0.9775 16 6 3.3993 -7.0897 0.7462 17 7 4.3579 -7.8181 1.2755 18 14 1.8279 -7.9050 0.1500 19 1 1.9807 -8.2912 -1.2757 20 1 1.5589 -9.1169 0.9650 21 1 0.6946 -6.9550 0.2868 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3633 0.8903 0.5134 25 1 3.7997 -3.2468 0.0187 26 1 1.4000 -4.7492 -1.8466 27 1 3.1047 -5.2386 -1.9975 28 1 1.8940 -6.4006 -1.4031 29 1 4.2491 -8.7786 1.3559 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116742790.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:21 Heat of formation + Delta-G solvation = 53.291493 kcal Electronic energy + Delta-G solvation = -15171.570753 eV Core-core repulsion = 12517.969142 eV Total energy + Delta-G solvation = -2653.601611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.32299 -39.14841 -35.39710 -33.98265 -32.66569 -32.18689 -30.08774 -27.70754 -25.35884 -24.24048 -22.55083 -20.91934 -20.09782 -18.98269 -17.01894 -16.43577 -16.11928 -15.59487 -14.78988 -14.25007 -13.74819 -13.46051 -13.09279 -13.01344 -12.64980 -12.34067 -12.06216 -11.82607 -11.47478 -11.13896 -10.94913 -10.53977 -10.32905 -9.94104 -9.55673 -9.42071 -9.24467 -8.91313 -8.45192 -6.33638 -4.38330 0.97819 2.29259 2.47825 3.14404 3.27481 3.29682 3.35378 3.47942 4.20051 4.31681 4.71751 5.00980 5.04314 5.10590 5.70018 5.73501 5.90973 6.13780 6.19269 6.32412 6.38017 6.58235 6.67938 6.92271 7.03291 7.30645 7.85390 8.23738 8.28884 8.45270 8.63578 9.25313 10.78178 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.048209 B = 0.007142 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.668407 B = 3919.708008 C = 4308.846293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.049 3.951 3 N -0.274 5.274 4 N -0.055 5.055 5 N -0.375 5.375 6 H 0.452 0.548 7 C -0.058 4.058 8 C 0.582 3.418 9 O -0.525 6.525 10 N -0.693 5.693 11 C 0.238 3.762 12 H 0.055 0.945 13 C -0.163 4.163 14 C -0.542 4.542 15 H 0.080 0.920 16 C 0.081 3.919 17 N -0.889 5.889 18 Si 0.886 3.114 19 H -0.275 1.275 20 H -0.293 1.293 21 H -0.261 1.261 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.075 0.925 25 H 0.390 0.610 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.262 10.334 -3.524 11.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 N -0.141 5.141 4 N -0.037 5.037 5 N -0.102 5.102 6 H 0.299 0.701 7 C -0.192 4.192 8 C 0.364 3.636 9 O -0.400 6.400 10 N -0.341 5.341 11 C 0.135 3.865 12 H 0.072 0.928 13 C -0.221 4.221 14 C -0.579 4.579 15 H 0.098 0.902 16 C -0.124 4.124 17 N -0.525 5.525 18 Si 0.715 3.285 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.185 1.185 22 H 0.098 0.902 23 H 0.114 0.886 24 H 0.094 0.906 25 H 0.223 0.777 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.372 11.250 -3.461 12.244 hybrid contribution 0.004 -1.809 -0.328 1.839 sum -3.368 9.441 -3.789 10.716 Atomic orbital electron populations 1.20290 0.84968 1.04304 1.03614 1.22284 0.98575 0.87023 1.01152 1.74884 0.95271 1.26172 1.17745 1.78128 1.16001 0.92455 1.17093 1.45481 1.09089 1.06911 1.48699 0.70106 1.22467 0.84704 0.97279 1.14799 1.16817 0.86576 0.81966 0.78225 1.90791 1.16588 1.81734 1.50916 1.46174 1.08227 1.07841 1.71826 1.19223 0.98015 0.75885 0.93367 0.92770 1.22470 1.00279 1.00040 0.99333 1.20962 1.02812 0.92064 1.42093 0.90203 1.24818 0.96485 0.96939 0.94133 1.69853 1.32656 1.06645 1.43329 0.86870 0.84231 0.79115 0.78284 1.20182 1.21989 1.18527 0.90204 0.88607 0.90595 0.77673 0.94297 0.92707 0.93087 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 9.94 36.01 0.36 -0.56 15 2 C 0.05 0.74 7.29 -82.39 -0.60 0.14 15 3 N -0.27 -4.23 12.35 33.51 0.41 -3.82 15 4 N -0.06 -0.79 13.35 60.35 0.81 0.01 15 5 N -0.37 -4.69 6.97 33.31 0.23 -4.45 15 6 H 0.45 4.03 8.32 -190.33 -1.58 2.45 15 7 C -0.06 -0.87 7.17 -82.33 -0.59 -1.46 15 8 C 0.58 10.20 7.77 -12.61 -0.10 10.10 15 9 O -0.52 -10.58 14.65 5.26 0.08 -10.50 15 10 N -0.69 -12.39 5.07 -56.08 -0.28 -12.67 15 11 C 0.24 5.24 2.15 -69.09 -0.15 5.09 15 12 H 0.05 1.31 6.63 -51.93 -0.34 0.97 15 13 C -0.16 -3.37 8.96 37.15 0.33 -3.04 15 14 C -0.54 -13.73 9.31 -34.44 -0.32 -14.05 15 15 H 0.08 2.12 7.98 -52.48 -0.42 1.70 15 16 C 0.08 2.15 5.45 -17.82 -0.10 2.06 15 17 N -0.89 -25.26 13.96 55.43 0.77 -24.48 15 18 Si 0.89 20.65 24.37 -169.99 -4.14 16.50 15 19 H -0.28 -6.21 6.87 56.52 0.39 -5.82 15 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 21 H -0.26 -5.98 6.53 56.52 0.37 -5.61 15 22 H 0.08 0.91 8.14 -51.93 -0.42 0.48 15 23 H 0.10 1.30 6.60 -51.93 -0.34 0.96 15 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.39 5.85 7.80 -40.82 -0.32 5.53 15 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15 28 H 0.05 1.10 3.28 -51.92 -0.17 0.93 15 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 15 LS Contribution 250.75 15.07 3.78 3.78 Total: -1.00 -30.46 250.75 -3.56 -34.02 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.05 Total: 3.34 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.16 Total: -1.72 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 1.94 Total: -45.42 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.14 Total: 16.50 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.46 -3.56 -34.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116742790.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.311 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds