Wall clock time and date at job start Sun Mar 29 2020 21:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47255 * 2 1 4 4 N 1.29934 * 125.37843 * 90.00102 * 3 2 1 5 5 C 1.36063 * 108.47820 * 180.02562 * 4 3 2 6 6 C 1.47425 * 126.44745 * 179.97438 * 5 4 3 7 7 O 1.21617 * 119.99517 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00233 * 0.05186 * 6 5 4 9 9 C 1.46497 * 120.00259 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47368 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99671 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00279 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99958 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00369 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46747 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47376 * 119.99683 * 14 12 10 17 17 H 1.48500 * 109.46785 * 239.99876 * 14 12 10 18 18 C 1.36093 * 107.10274 * 0.02562 * 5 4 3 19 19 O 1.34053 * 125.37859 * 270.28629 * 3 2 1 20 20 H 1.09008 * 109.46668 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46971 * 299.99330 * 1 2 3 22 22 H 1.08994 * 109.47404 * 59.99856 * 1 2 3 23 23 H 1.09007 * 109.47297 * 239.99975 * 2 1 3 24 24 H 1.09007 * 109.47549 * 120.00505 * 2 1 3 25 25 H 0.97004 * 119.99702 * 359.97438 * 8 6 5 26 26 H 1.08996 * 109.46834 * 299.99984 * 9 8 6 27 27 H 1.08998 * 109.47002 * 59.99665 * 9 8 6 28 28 H 0.96997 * 119.99990 * 180.02562 * 13 12 10 29 29 H 1.08002 * 126.52257 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2832 2.1301 1.0594 5 6 2.7166 3.3576 0.6639 6 6 3.1102 4.4730 1.5439 7 8 3.4815 5.5260 1.0619 8 7 3.0590 4.3255 2.8826 9 6 3.4507 5.4337 3.7571 10 6 3.3028 5.0138 5.1969 11 1 2.9518 4.0210 5.4365 12 6 3.6147 5.8975 6.2082 13 7 4.0417 7.1067 5.9164 14 14 3.4321 5.3769 7.9929 15 1 2.9384 3.9776 8.0522 16 1 4.7495 5.4667 8.6720 17 1 2.4625 6.2727 8.6730 18 6 2.7173 3.3625 -0.6971 19 8 2.2859 2.1544 -1.0930 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.7629 3.4856 3.2670 26 1 4.4889 5.7016 3.5612 27 1 2.8105 6.2940 3.5623 28 1 4.2615 7.7283 6.6279 29 1 3.0064 4.1833 -1.3367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116849511.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:07 Heat of formation + Delta-G solvation = -57.722439 kcal Electronic energy + Delta-G solvation = -14577.199350 eV Core-core repulsion = 11886.491062 eV Total energy + Delta-G solvation = -2690.708288 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.47410 -40.43122 -36.29012 -36.02896 -34.85352 -34.31871 -30.65476 -29.42146 -25.92175 -25.22130 -23.91587 -22.11462 -21.45238 -19.64283 -18.25109 -17.87836 -17.30292 -17.11991 -16.26085 -16.12904 -15.59855 -15.43318 -14.71965 -14.38639 -14.06147 -14.05791 -13.56421 -12.95340 -12.77323 -12.61265 -12.34323 -12.26773 -12.02073 -11.88558 -11.51182 -11.23994 -10.85161 -10.18296 -9.86285 -8.32244 -6.49034 0.06013 0.96532 1.41821 1.43366 1.55513 1.57693 2.22457 2.24094 2.42748 2.89850 3.02470 3.76020 3.79736 4.23220 4.27976 4.37427 4.56351 4.67577 4.97940 5.01146 5.07652 5.11852 5.17120 5.37097 5.38509 5.58406 5.78812 6.41177 6.59166 6.78400 7.14103 7.28871 8.80265 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.037314 B = 0.005755 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.212543 B = 4864.583837 C = 5522.172457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.025 4.025 3 C 0.203 3.797 4 N -0.489 5.489 5 C -0.097 4.097 6 C 0.581 3.419 7 O -0.588 6.588 8 N -0.690 5.690 9 C 0.265 3.735 10 C -0.560 4.560 11 H 0.078 0.922 12 C 0.007 3.993 13 N -0.928 5.928 14 Si 0.987 3.013 15 H -0.256 1.256 16 H -0.275 1.275 17 H -0.276 1.276 18 C 0.029 3.971 19 O -0.191 6.191 20 H 0.100 0.900 21 H 0.046 0.954 22 H 0.059 0.941 23 H 0.125 0.875 24 H 0.116 0.884 25 H 0.409 0.591 26 H -0.004 1.004 27 H -0.004 1.004 28 H 0.271 0.729 29 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 -16.290 -12.258 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.062 4.062 3 C -0.007 4.007 4 N -0.219 5.219 5 C -0.216 4.216 6 C 0.367 3.633 7 O -0.470 6.470 8 N -0.338 5.338 9 C 0.143 3.857 10 C -0.597 4.597 11 H 0.096 0.904 12 C -0.193 4.193 13 N -0.566 5.566 14 Si 0.810 3.190 15 H -0.180 1.180 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.046 4.046 19 O -0.077 6.077 20 H 0.118 0.882 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.143 0.857 24 H 0.135 0.865 25 H 0.244 0.756 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.080 0.920 29 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -6.054 -15.594 -11.860 20.506 hybrid contribution 0.185 0.569 0.436 0.740 sum -5.869 -15.025 -11.424 19.766 Atomic orbital electron populations 1.21796 0.92257 1.04437 1.02143 1.20450 0.97344 0.81190 1.07263 1.27354 0.97772 0.97976 0.77553 1.70732 1.16939 1.02652 1.31531 1.21633 1.11840 0.94219 0.93881 1.17342 0.77738 0.85658 0.82543 1.90741 1.50987 1.29217 1.76083 1.46113 1.64263 1.18230 1.05191 1.18698 0.93515 0.84738 0.88776 1.21594 1.46843 1.00953 0.90359 0.90354 1.26053 0.93721 0.94443 1.05119 1.70130 1.44367 1.07051 1.35089 0.85076 0.78055 0.78963 0.76919 1.18004 1.20095 1.20107 1.25688 0.96898 0.87187 0.94788 1.84411 1.63339 1.22156 1.37756 0.88153 0.93522 0.92191 0.85718 0.86539 0.75559 0.98593 0.98618 0.92047 0.72749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.89 71.98 0.71 -1.01 15 2 C -0.02 -0.32 6.56 29.85 0.20 -0.12 15 3 C 0.20 4.82 7.56 88.39 0.67 5.48 15 4 N -0.49 -15.69 11.06 -293.03 -3.24 -18.93 15 5 C -0.10 -3.47 6.99 40.41 0.28 -3.19 15 6 C 0.58 26.55 7.81 86.66 0.68 27.23 15 7 O -0.59 -30.29 16.89 -4.09 -0.07 -30.35 15 8 N -0.69 -33.44 5.54 -470.12 -2.61 -36.05 15 9 C 0.26 15.32 5.43 85.63 0.46 15.79 15 10 C -0.56 -32.02 9.28 25.60 0.24 -31.78 15 11 H 0.08 4.17 7.60 -2.91 -0.02 4.15 15 12 C 0.01 0.37 5.46 84.65 0.46 0.83 15 13 N -0.93 -56.69 13.29 21.45 0.28 -56.41 15 14 Si 0.99 43.46 29.54 68.60 2.03 45.49 15 15 H -0.26 -10.60 7.11 99.48 0.71 -9.90 15 16 H -0.28 -11.79 7.11 99.48 0.71 -11.09 15 17 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 18 C 0.03 0.78 11.95 67.32 0.80 1.58 15 19 O -0.19 -4.45 10.73 0.38 0.00 -4.45 15 20 H 0.10 0.64 8.14 -2.38 -0.02 0.62 15 21 H 0.05 0.74 8.14 -2.38 -0.02 0.72 15 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 15 23 H 0.12 0.89 8.14 -2.38 -0.02 0.87 15 24 H 0.12 1.36 8.14 -2.38 -0.02 1.34 15 25 H 0.41 18.10 8.05 -92.71 -0.75 17.36 15 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 15 27 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 15 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 29 H 0.26 5.26 8.06 -2.91 -0.02 5.24 15 Total: -1.00 -74.34 268.30 1.33 -73.01 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.42 Total: 12.88 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 4.50 Total: 14.81 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -5.56 Total: -111.38 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.06 Total: -34.81 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -74.34 1.33 -73.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116849511.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.287 kcal (2) G-P(sol) polarization free energy of solvation -74.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds