Wall clock time and date at job start Sun Mar 29 2020 22:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99813 * 2 1 4 4 C 1.50699 * 109.47803 * 66.04299 * 3 2 1 5 5 H 1.08000 * 119.99705 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00135 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99990 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99988 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47032 * 59.99873 * 8 6 4 10 10 H 1.48492 * 109.47560 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47126 * 300.00744 * 8 6 4 12 12 C 1.46899 * 111.00089 * 236.04174 * 2 1 3 13 13 C 1.50702 * 109.46895 * 293.95366 * 12 2 1 14 14 C 1.38746 * 120.38505 * 90.00219 * 13 12 2 15 15 C 1.38505 * 118.45074 * 180.02562 * 14 13 12 16 16 C 1.38567 * 119.13700 * 359.97438 * 15 14 13 17 17 F 1.35103 * 119.64758 * 180.02562 * 16 15 14 18 18 N 1.32024 * 120.69741 * 359.97438 * 16 15 14 19 19 C 1.31939 * 121.69033 * 0.04784 * 18 16 15 20 20 H 1.08997 * 109.47146 * 183.95716 * 1 2 3 21 21 H 1.08996 * 109.47068 * 303.95796 * 1 2 3 22 22 H 1.09002 * 109.47196 * 63.95685 * 1 2 3 23 23 H 1.08999 * 109.46967 * 186.04754 * 3 2 1 24 24 H 1.08999 * 109.46949 * 306.04010 * 3 2 1 25 25 H 0.97000 * 119.99873 * 179.97438 * 7 6 4 26 26 H 1.08992 * 109.46814 * 173.95372 * 12 2 1 27 27 H 1.08994 * 109.46986 * 53.95391 * 12 2 1 28 28 H 1.07996 * 120.77823 * 359.97438 * 14 13 12 29 29 H 1.07996 * 120.43235 * 179.72707 * 15 14 13 30 30 H 1.07999 * 119.59759 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0473 1.2983 5 1 1.0739 1.5117 2.0484 6 6 2.0276 3.3493 1.5287 7 7 2.7128 4.0016 0.6151 8 14 1.5838 4.1867 3.1384 9 1 2.1755 3.4290 4.2701 10 1 2.1158 5.5731 3.1383 11 1 0.1066 4.2239 3.2862 12 6 1.9955 -0.7661 -1.1375 13 6 1.6370 -2.2205 -0.9726 14 6 0.4489 -2.7137 -1.4924 15 6 0.1592 -4.0567 -1.3172 16 6 1.0599 -4.8576 -0.6336 17 9 0.7879 -6.1692 -0.4572 18 7 2.1815 -4.3528 -0.1537 19 6 2.4874 -3.0780 -0.3029 20 1 -0.3633 -1.0252 0.0709 21 1 -0.3633 0.5740 0.8524 22 1 -0.3634 0.4512 -0.9233 23 1 3.0797 1.3444 -0.1083 24 1 1.5611 1.9272 -0.8310 25 1 2.9874 4.9177 0.7770 26 1 3.0797 -0.6611 -1.1755 27 1 1.5612 -0.3874 -2.0627 28 1 -0.2345 -2.0654 -2.0207 29 1 -0.7587 -4.4735 -1.7048 30 1 3.4140 -2.7007 0.1038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137734703.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:15 Heat of formation + Delta-G solvation = -23.286307 kcal Electronic energy + Delta-G solvation = -14690.460045 eV Core-core repulsion = 12013.617810 eV Total energy + Delta-G solvation = -2676.842236 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.02783 -41.20496 -38.22716 -34.88249 -33.64831 -32.45713 -29.19158 -28.12068 -25.83313 -24.84791 -23.36968 -21.87830 -19.06078 -18.52604 -18.28813 -17.13302 -16.85561 -16.33854 -16.03330 -15.68281 -15.47269 -14.85037 -14.55361 -14.12771 -14.04526 -13.81594 -13.37471 -13.02373 -12.87332 -12.58013 -12.45556 -12.28214 -11.81325 -11.33681 -10.96083 -10.69170 -10.58806 -9.89425 -9.00889 -8.18709 -6.28063 -0.10540 0.13235 1.43324 1.45479 1.53400 2.40915 2.53570 2.59952 3.14474 3.43383 3.56509 3.76704 3.89510 3.96065 4.30287 4.49767 4.65464 4.69000 4.79055 4.81731 4.88708 5.08513 5.21381 5.21746 5.34146 5.62452 5.66479 6.06326 6.31305 6.60367 6.63400 6.87579 7.41532 8.91711 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.054919 B = 0.005340 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.723745 B = 5241.747955 C = 5317.861396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.546 5.546 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.005 3.995 7 N -0.933 5.933 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.268 1.268 12 C 0.096 3.904 13 C -0.127 4.127 14 C -0.039 4.039 15 C -0.178 4.178 16 C 0.277 3.723 17 F -0.122 7.122 18 N -0.542 5.542 19 C 0.144 3.856 20 H 0.073 0.927 21 H 0.054 0.946 22 H 0.021 0.979 23 H 0.010 0.990 24 H -0.031 1.031 25 H 0.264 0.736 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.167 0.833 29 H 0.179 0.821 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -12.859 -5.355 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.271 5.271 3 C 0.081 3.919 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.193 4.193 7 N -0.573 5.573 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.193 1.193 12 C -0.032 4.032 13 C -0.130 4.130 14 C -0.065 4.065 15 C -0.199 4.199 16 C 0.124 3.876 17 F -0.101 7.101 18 N -0.256 5.256 19 C -0.012 4.012 20 H 0.092 0.908 21 H 0.072 0.928 22 H 0.039 0.961 23 H 0.028 0.972 24 H -0.013 1.013 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.185 0.815 29 H 0.196 0.804 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.740 -13.522 -4.514 15.023 hybrid contribution -0.689 1.331 -0.321 1.533 sum -5.429 -12.192 -4.835 14.195 Atomic orbital electron populations 1.22261 0.87559 1.01013 1.00185 1.62040 1.08403 1.15376 1.41241 1.19405 0.94057 0.83366 0.95044 1.21437 1.34867 0.97453 1.02528 0.92117 1.25828 0.95051 0.98055 1.00394 1.70057 1.39275 1.11919 1.36066 0.85505 0.78790 0.77228 0.79512 1.19609 1.20901 1.19322 1.20946 1.01001 0.88568 0.92658 1.20865 0.96235 0.96626 0.99254 1.21741 0.95107 0.94501 0.95124 1.22040 1.01822 0.94119 1.01877 1.18494 0.92195 0.79697 0.97254 1.91588 1.92742 1.32224 1.93574 1.66980 1.19446 1.17029 1.22192 1.22537 0.99793 0.85643 0.93243 0.90811 0.92755 0.96066 0.97212 1.01324 0.92693 0.89967 0.93229 0.81512 0.80368 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 8.99 127.69 1.15 2.48 16 2 N -0.55 -21.79 4.74 -931.68 -4.42 -26.21 16 3 C 0.21 10.45 4.72 85.56 0.40 10.86 16 4 C -0.52 -28.83 8.46 25.60 0.22 -28.61 16 5 H 0.06 3.29 7.12 -2.91 -0.02 3.27 16 6 C 0.00 0.28 5.46 84.65 0.46 0.74 16 7 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 8 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 C 0.10 3.00 5.14 85.56 0.44 3.44 16 13 C -0.13 -3.36 4.89 -19.78 -0.10 -3.46 16 14 C -0.04 -0.81 8.14 22.46 0.18 -0.63 16 15 C -0.18 -3.54 10.09 22.41 0.23 -3.32 16 16 C 0.28 7.25 8.41 84.74 0.71 7.96 16 17 F -0.12 -3.18 17.29 44.97 0.78 -2.40 16 18 N -0.54 -16.19 10.37 -196.92 -2.04 -18.23 16 19 C 0.14 4.04 10.86 84.64 0.92 4.96 16 20 H 0.07 2.15 6.17 -2.39 -0.01 2.13 16 21 H 0.05 2.14 6.76 -2.39 -0.02 2.13 16 22 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.01 0.53 7.93 -2.39 -0.02 0.51 16 24 H -0.03 -1.68 8.12 -2.39 -0.02 -1.70 16 25 H 0.26 14.66 8.31 -92.71 -0.77 13.88 16 26 H 0.08 2.56 7.88 -2.39 -0.02 2.54 16 27 H 0.05 1.44 8.07 -2.39 -0.02 1.42 16 28 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.17 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -63.40 264.38 2.37 -61.03 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: 1.13 Total: 0.35 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.61 Total: -5.58 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -6.18 Total: -98.86 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -63.40 2.37 -61.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137734703.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.744 kcal (2) G-P(sol) polarization free energy of solvation -63.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds