Wall clock time and date at job start Sun Mar 29 2020 21:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47334 * 2 1 4 4 C 1.47203 * 109.46968 * 239.99856 * 2 1 3 5 5 N 2.60797 * 109.47052 * 239.99987 * 2 1 3 6 6 C 1.50696 * 109.47104 * 120.00128 * 2 1 3 7 7 O 1.21279 * 120.00229 * 86.11674 * 6 2 1 8 8 N 1.34781 * 120.00441 * 266.11805 * 6 2 1 9 9 C 1.47073 * 136.05223 * 355.03919 * 8 6 2 10 10 C 1.53497 * 88.04592 * 207.05679 * 9 8 6 11 11 O 1.42890 * 114.20702 * 87.55026 * 10 9 8 12 12 C 1.50699 * 114.20349 * 220.37463 * 10 9 8 13 13 H 1.08004 * 119.99896 * 0.02562 * 12 10 9 14 14 C 1.37876 * 119.99957 * 180.02562 * 12 10 9 15 15 N 1.31517 * 119.99952 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99818 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47401 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47357 * 119.99965 * 16 14 12 19 19 H 1.48509 * 109.46898 * 239.99442 * 16 14 12 20 20 C 1.47061 * 136.06470 * 174.98708 * 8 6 2 21 21 H 1.08995 * 109.47496 * 180.86429 * 1 2 3 22 22 H 1.09003 * 109.47171 * 300.85904 * 1 2 3 23 23 H 1.09002 * 109.47237 * 60.85986 * 1 2 3 24 24 H 1.08995 * 113.46612 * 321.86815 * 9 8 6 25 25 H 1.09004 * 113.46474 * 92.24456 * 9 8 6 26 26 H 0.96698 * 114.00200 * 179.97438 * 11 10 9 27 27 H 0.97001 * 119.99520 * 180.02562 * 15 14 12 28 28 H 1.08995 * 113.46844 * 267.69994 * 20 8 6 29 29 H 1.09000 * 113.46557 * 38.07816 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6940 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 6 2.0323 -0.7104 1.2304 7 8 2.1674 -1.9156 1.2221 8 7 2.3314 -0.0065 2.3402 9 6 2.3884 1.4162 2.7084 10 6 3.4379 1.0465 3.7658 11 8 4.7817 1.0401 3.2803 12 6 3.2778 1.7739 5.0759 13 1 2.4745 2.4842 5.2045 14 6 4.1570 1.5325 6.1102 15 7 5.1349 0.6672 5.9537 16 14 3.9582 2.4337 7.7344 17 1 2.7891 3.3458 7.6545 18 1 3.7441 1.4481 8.8244 19 1 5.1838 3.2239 8.0152 20 6 2.7436 -0.3229 3.7159 21 1 -0.3634 -1.0275 0.0155 22 1 -0.3634 0.5271 0.8822 23 1 -0.3634 0.5004 -0.8976 24 1 2.7776 2.0546 1.9153 25 1 1.4577 1.7922 3.1333 26 1 5.4404 0.8071 3.9489 27 1 5.7531 0.4972 6.6816 28 1 1.9079 -0.4104 4.4102 29 1 3.4341 -1.1639 3.7796 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256348358.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:59 Heat of formation + Delta-G solvation = -43.544397 kcal Electronic energy + Delta-G solvation = -15183.399757 eV Core-core repulsion = 12493.306276 eV Total energy + Delta-G solvation = -2690.093482 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.43155 -39.49220 -37.63765 -35.88035 -34.25112 -34.07332 -30.35026 -27.40844 -26.79668 -25.76933 -22.28336 -20.40283 -19.34322 -18.59945 -18.17321 -17.08867 -16.50655 -16.37520 -15.95112 -15.33325 -14.82824 -14.62555 -14.41695 -14.08571 -13.86465 -13.56527 -13.36050 -13.17570 -12.79586 -12.78798 -12.68665 -12.41614 -12.17479 -12.09629 -11.44873 -10.84929 -10.57488 -10.23243 -9.58643 -8.23439 -6.40552 1.26155 1.48560 1.49756 1.54675 1.64251 1.64791 2.10838 2.43941 2.79948 3.00426 3.39294 3.81611 3.96277 4.07632 4.22239 4.53020 4.73308 4.77429 4.82189 4.86963 4.98834 5.01325 5.22867 5.30836 5.78526 5.93877 6.35771 6.68639 6.86110 7.02573 7.34148 7.49208 8.82654 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.056353 B = 0.006618 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.745319 B = 4230.124581 C = 4373.674736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.003 3.997 3 H 0.170 0.830 4 C 0.243 3.757 5 N -0.468 5.468 6 C 0.537 3.463 7 O -0.600 6.600 8 N -0.628 5.628 9 C 0.115 3.885 10 C 0.210 3.790 11 O -0.587 6.587 12 C -0.542 4.542 13 H 0.089 0.911 14 C 0.023 3.977 15 N -0.926 5.926 16 Si 0.971 3.029 17 H -0.256 1.256 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.077 3.923 21 H 0.056 0.944 22 H 0.104 0.896 23 H 0.108 0.892 24 H 0.095 0.905 25 H 0.129 0.871 26 H 0.387 0.613 27 H 0.273 0.727 28 H 0.094 0.906 29 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 6.214 -3.773 12.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.021 4.021 3 H 0.187 0.813 4 C -0.075 4.075 5 N -0.144 5.144 6 C 0.326 3.674 7 O -0.482 6.482 8 N -0.360 5.360 9 C -0.006 4.006 10 C 0.168 3.832 11 O -0.400 6.400 12 C -0.580 4.580 13 H 0.107 0.893 14 C -0.176 4.176 15 N -0.567 5.567 16 Si 0.796 3.204 17 H -0.179 1.179 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.047 4.047 21 H 0.075 0.925 22 H 0.122 0.878 23 H 0.126 0.874 24 H 0.113 0.887 25 H 0.146 0.854 26 H 0.243 0.757 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.100 4.763 -5.834 11.812 hybrid contribution 0.714 -0.316 1.860 2.017 sum -8.386 4.447 -3.974 10.290 Atomic orbital electron populations 1.21792 0.86326 1.04114 1.06655 1.19026 1.00976 1.00441 0.81647 0.81301 1.28782 0.92335 0.92587 0.93841 1.81146 1.09677 1.09606 1.14019 1.20189 0.77005 0.86308 0.83894 1.90697 1.56620 1.16646 1.84266 1.49729 1.64565 1.11476 1.10205 1.23548 0.99530 0.80694 0.96838 1.19970 0.80826 0.90301 0.92077 1.85991 1.18034 1.92514 1.43423 1.21801 1.14591 1.25128 0.96491 0.89265 1.25874 0.94325 0.94830 1.02610 1.69377 1.17446 1.35150 1.34744 0.85300 0.78392 0.78285 0.78386 1.17944 1.21217 1.21184 1.24155 0.98296 1.01644 0.80569 0.92496 0.87773 0.87379 0.88712 0.85379 0.75745 0.91728 0.88806 0.95360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.13 71.98 0.66 -1.36 15 2 C 0.00 0.07 3.02 -13.35 -0.04 0.03 15 3 H 0.17 2.70 7.65 -2.39 -0.02 2.68 15 4 C 0.24 7.29 14.13 89.44 1.26 8.55 15 5 N -0.47 -16.49 18.54 20.01 0.37 -16.11 15 6 C 0.54 19.01 7.07 87.66 0.62 19.63 15 7 O -0.60 -27.28 17.20 -3.03 -0.05 -27.33 15 8 N -0.63 -22.67 3.69 -858.11 -3.17 -25.84 15 9 C 0.11 3.61 7.59 83.17 0.63 4.24 15 10 C 0.21 9.11 1.59 -11.17 -0.02 9.09 15 11 O -0.59 -29.07 13.54 -148.98 -2.02 -31.09 15 12 C -0.54 -24.51 8.69 25.60 0.22 -24.29 15 13 H 0.09 3.68 7.81 -2.91 -0.02 3.66 15 14 C 0.02 1.09 5.40 84.65 0.46 1.55 15 15 N -0.93 -46.82 11.01 21.45 0.24 -46.58 15 16 Si 0.97 37.57 29.54 68.60 2.03 39.59 15 17 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 18 H -0.29 -11.21 7.11 99.48 0.71 -10.50 15 19 H -0.29 -11.20 7.11 99.48 0.71 -10.49 15 20 C 0.08 3.28 8.04 83.22 0.67 3.95 15 21 H 0.06 1.07 8.14 -2.39 -0.02 1.05 15 22 H 0.10 1.23 8.14 -2.39 -0.02 1.21 15 23 H 0.11 1.05 8.14 -2.39 -0.02 1.03 15 24 H 0.09 2.55 7.98 -2.39 -0.02 2.53 15 25 H 0.13 3.14 8.10 -2.38 -0.02 3.12 15 26 H 0.39 20.33 6.33 -74.06 -0.47 19.86 15 27 H 0.27 13.20 8.31 -92.71 -0.77 12.43 15 28 H 0.09 3.73 8.10 -2.39 -0.02 3.71 15 29 H 0.03 1.38 8.14 -2.39 -0.02 1.36 15 Total: -1.00 -65.41 266.33 2.56 -62.84 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.71 Total: 23.11 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: 4.46 Total: 21.40 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.56 Total: -88.53 kcal Atomic # 8 Polarization: -56.35 SS G_CDS: -2.07 Total: -58.42 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.59 kcal Total: -65.41 2.56 -62.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256348358.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.299 kcal (2) G-P(sol) polarization free energy of solvation -65.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds