Wall clock time and date at job start Sun Mar 29 2020 21:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37956 * 119.55790 * 2 1 4 4 C 1.39127 * 119.28955 * 179.76888 * 3 2 1 5 5 F 1.35102 * 120.77382 * 180.24670 * 4 3 2 6 6 C 1.38622 * 118.45680 * 0.45160 * 4 3 2 7 7 C 1.38981 * 119.06479 * 359.52486 * 6 4 3 8 8 N 1.39014 * 119.69019 * 180.27695 * 7 6 4 9 9 C 1.46493 * 120.00200 * 5.00450 * 8 7 6 10 10 C 1.46506 * 119.99725 * 185.00012 * 8 7 6 11 11 C 1.50700 * 109.47000 * 90.00496 * 10 8 7 12 12 H 1.07996 * 119.99847 * 359.97438 * 11 10 8 13 13 C 1.37875 * 119.99905 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99988 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99928 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46941 * 89.99744 * 15 13 11 17 17 H 1.48496 * 109.46875 * 209.99910 * 15 13 11 18 18 H 1.48498 * 109.47084 * 329.99785 * 15 13 11 19 19 N 1.31979 * 119.55975 * 179.97438 * 2 1 3 20 20 H 1.09004 * 109.47224 * 270.02580 * 1 2 3 21 21 H 1.08995 * 109.47159 * 30.02171 * 1 2 3 22 22 H 1.09002 * 109.46888 * 150.02608 * 1 2 3 23 23 H 1.07998 * 120.35313 * 0.02562 * 3 2 1 24 24 H 1.08002 * 120.47162 * 179.80811 * 6 4 3 25 25 H 1.09001 * 109.47814 * 89.99835 * 9 8 7 26 26 H 1.09001 * 109.47594 * 210.00118 * 9 8 7 27 27 H 1.09005 * 109.47145 * 329.99477 * 9 8 7 28 28 H 1.08998 * 109.46945 * 209.99911 * 10 8 7 29 29 H 1.08997 * 109.47412 * 329.99745 * 10 8 7 30 30 H 0.97000 * 119.99695 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1876 1.2000 0.0000 4 6 3.5788 1.1935 0.0049 5 9 4.2755 2.3510 0.0100 6 6 4.2337 -0.0283 0.0000 7 6 3.4819 -1.1972 0.0005 8 7 4.1252 -2.4296 0.0015 9 6 5.5845 -2.4940 0.1127 10 6 3.3437 -3.6639 -0.1085 11 6 3.1860 -4.0307 -1.5617 12 1 3.6238 -3.4067 -2.3267 13 6 2.4829 -5.1631 -1.9144 14 7 1.9503 -5.9233 -0.9828 15 14 2.2869 -5.6174 -3.7157 16 1 3.4147 -6.4893 -4.1318 17 1 1.0047 -6.3416 -3.9068 18 1 2.2856 -4.3825 -4.5404 19 7 2.1581 -1.1480 0.0005 20 1 -0.3634 0.0005 1.0277 21 1 -0.3633 0.8897 -0.5141 22 1 -0.3633 -0.8902 -0.5134 23 1 1.6461 2.1345 0.0004 24 1 5.3128 -0.0713 0.0005 25 1 5.8668 -2.5508 1.1640 26 1 5.9501 -3.3780 -0.4099 27 1 6.0227 -1.6012 -0.3335 28 1 3.8596 -4.4685 0.4154 29 1 2.3604 -3.5123 0.3368 30 1 1.4553 -6.7197 -1.2310 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337751729.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:46 Heat of formation + Delta-G solvation = -4.813426 kcal Electronic energy + Delta-G solvation = -15043.537213 eV Core-core repulsion = 12367.496021 eV Total energy + Delta-G solvation = -2676.041191 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.71135 -39.67212 -36.10909 -32.83574 -31.79336 -30.92741 -28.20047 -26.82470 -25.49493 -23.17546 -21.50748 -20.51976 -17.10320 -16.88168 -16.39406 -15.47718 -15.36896 -15.08540 -14.63314 -14.13603 -13.70646 -13.37934 -13.26668 -12.91754 -12.15676 -11.92705 -11.88014 -11.54966 -11.33540 -11.08732 -10.89233 -10.57356 -10.14770 -9.83447 -9.12098 -8.91695 -8.79797 -8.43405 -6.89495 -6.02962 -4.09782 1.60618 1.82127 3.28502 3.35185 3.39456 3.71127 4.29967 4.43086 4.46684 4.86192 5.28091 5.31616 5.45176 5.59123 5.66783 5.82822 5.89897 5.93099 5.99014 6.18204 6.31744 6.38696 6.45680 6.89493 7.13919 7.46601 7.80309 7.93434 8.20886 8.23648 8.81248 8.96956 9.54588 11.02383 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.008123 C = 0.007237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.840015 B = 3446.125616 C = 3868.199210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.207 3.793 3 C -0.297 4.297 4 C 0.180 3.820 5 F -0.140 7.140 6 C -0.306 4.306 7 C 0.448 3.552 8 N -0.586 5.586 9 C 0.095 3.905 10 C 0.251 3.749 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.275 1.275 19 N -0.527 5.527 20 H 0.077 0.923 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.132 0.868 24 H 0.136 0.864 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.029 0.971 29 H 0.053 0.947 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 10.829 2.666 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.065 3.935 3 C -0.321 4.321 4 C 0.154 3.846 5 F -0.118 7.118 6 C -0.333 4.333 7 C 0.210 3.790 8 N -0.293 5.293 9 C -0.049 4.049 10 C 0.132 3.868 11 C -0.563 4.563 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.200 1.200 19 N -0.246 5.246 20 H 0.096 0.904 21 H 0.090 0.910 22 H 0.101 0.899 23 H 0.150 0.850 24 H 0.154 0.846 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.460 9.651 2.697 10.126 hybrid contribution 0.604 0.658 -1.070 1.394 sum 2.064 10.309 1.627 10.639 Atomic orbital electron populations 1.20712 0.88891 1.03474 1.02921 1.20786 0.96517 0.86682 0.89523 1.21385 0.92294 1.00212 1.18257 1.17553 0.89657 0.80796 0.96627 1.91463 1.79467 1.47361 1.93528 1.21247 1.01348 0.90958 1.19754 1.18056 0.87824 0.85708 0.87423 1.47130 1.05562 1.04251 1.72317 1.21640 0.80343 1.02561 1.00358 1.19367 0.91968 0.78453 0.97042 1.21450 1.34051 1.08549 0.92271 0.92646 1.24908 0.95321 0.96168 0.97579 1.69932 1.35627 1.15349 1.32437 0.86532 0.77513 0.78463 0.85121 1.20703 1.21069 1.19973 1.67246 1.07678 1.28668 1.20988 0.90437 0.90977 0.89906 0.85013 0.84586 0.93703 0.90492 0.92289 0.95278 0.92912 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.17 36.01 0.37 -1.06 16 2 C 0.21 3.69 6.78 -82.63 -0.56 3.13 16 3 C -0.30 -4.80 9.73 -39.35 -0.38 -5.18 16 4 C 0.18 3.06 7.39 -39.11 -0.29 2.78 16 5 F -0.14 -2.21 17.30 2.25 0.04 -2.17 16 6 C -0.31 -5.54 9.27 -39.16 -0.36 -5.90 16 7 C 0.45 9.45 7.37 -155.01 -1.14 8.31 16 8 N -0.59 -12.73 2.97 -183.13 -0.54 -13.27 16 9 C 0.09 1.60 10.28 59.84 0.62 2.22 16 10 C 0.25 6.46 5.22 -5.19 -0.03 6.44 16 11 C -0.52 -14.65 9.39 -34.44 -0.32 -14.97 16 12 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 15 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 19 N -0.53 -11.46 8.99 -8.70 -0.08 -11.54 16 20 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 21 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 22 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 24 H 0.14 2.16 6.02 -52.49 -0.32 1.84 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 27 H 0.06 0.86 5.98 -51.93 -0.31 0.55 16 28 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 29 H 0.05 1.49 7.30 -51.93 -0.38 1.11 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 266.56 15.07 4.02 4.02 Total: -1.00 -30.52 266.56 -6.55 -37.08 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -3.50 Total: -2.78 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.20 Total: -2.58 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.11 Total: -50.20 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.52 -6.55 -37.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337751729.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.263 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds