Wall clock time and date at job start Sun Mar 29 2020 22:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00002 * 2 1 4 4 C 1.50709 * 109.46812 * 269.99857 * 3 2 1 5 5 H 1.08002 * 119.99803 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99701 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00191 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99831 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46927 * 60.00095 * 8 6 4 10 10 H 1.48496 * 109.47006 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46893 * 300.00491 * 8 6 4 12 12 C 1.34776 * 120.00055 * 179.97438 * 2 1 3 13 13 O 1.21550 * 120.00014 * 174.55212 * 12 2 1 14 14 C 1.47870 * 119.99882 * 354.83188 * 12 2 1 15 15 N 1.34549 * 126.05258 * 353.46201 * 14 12 2 16 16 C 1.30867 * 107.27133 * 179.97438 * 15 14 12 17 17 N 1.34579 * 107.62824 * 359.97438 * 16 15 14 18 18 C 1.46496 * 125.75220 * 180.02562 * 17 16 15 19 19 N 1.28850 * 108.50226 * 359.76060 * 17 16 15 20 20 H 1.09000 * 109.46809 * 265.37472 * 1 2 3 21 21 H 1.08994 * 109.46916 * 25.37873 * 1 2 3 22 22 H 1.09003 * 109.47039 * 145.37872 * 1 2 3 23 23 H 1.09001 * 109.47273 * 29.99323 * 3 2 1 24 24 H 1.09000 * 109.47529 * 149.99905 * 3 2 1 25 25 H 0.97008 * 119.99984 * 179.97438 * 7 6 4 26 26 H 1.08000 * 126.18439 * 180.02562 * 16 15 14 27 27 H 1.09002 * 109.47090 * 90.00381 * 18 17 16 28 28 H 1.08993 * 109.47659 * 210.00430 * 18 17 16 29 29 H 1.09007 * 109.47201 * 330.00527 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0960 -2.2418 6 6 3.1260 2.8778 -1.6729 7 7 3.5533 3.6180 -0.6733 8 14 3.4367 3.4174 -3.4341 9 1 2.1390 3.5946 -4.1337 10 1 4.1793 4.7034 -3.4341 11 1 4.2394 2.3827 -4.1344 12 6 2.1389 -1.1672 0.0005 13 8 3.3503 -1.1696 -0.0994 14 6 1.4041 -2.4451 0.1164 15 7 0.0862 -2.5823 0.3503 16 6 -0.1716 -3.8650 0.3804 17 7 0.9851 -4.5183 0.1648 18 6 1.1502 -5.9732 0.1164 19 7 1.9219 -3.6486 0.0027 20 1 -0.3633 -0.0829 1.0243 21 1 -0.3633 0.9285 -0.4404 22 1 -0.3633 -0.8457 -0.5839 23 1 1.6084 2.0284 0.5137 24 1 3.1499 1.1384 0.5138 25 1 4.0302 4.4440 -0.8506 26 1 -1.1380 -4.3174 0.5471 27 1 1.0102 -6.3208 -0.9072 28 1 2.1519 -6.2367 0.4557 29 1 0.4113 -6.4445 0.7645 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347475814.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:39 Heat of formation + Delta-G solvation = 74.190157 kcal Electronic energy + Delta-G solvation = -15083.712166 eV Core-core repulsion = 12431.016788 eV Total energy + Delta-G solvation = -2652.695377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.25846 -38.57425 -34.84911 -34.39467 -32.46746 -31.56738 -28.50971 -27.16683 -25.72537 -23.88709 -22.53274 -21.55980 -19.12096 -17.15394 -16.72027 -16.36039 -15.87199 -15.61445 -14.68351 -14.31302 -13.98141 -13.46831 -13.23684 -12.68547 -12.19104 -12.13158 -11.94618 -11.46755 -11.09324 -10.86742 -10.50929 -10.28750 -10.15008 -9.94063 -9.57442 -9.34601 -9.17020 -8.36073 -7.54595 -5.96983 -4.01294 1.66624 2.30035 2.40392 3.38546 3.42092 3.45998 3.75096 4.04186 4.30654 4.40943 4.52733 4.77865 4.91349 5.04519 5.20101 5.37346 6.08598 6.18493 6.31383 6.41915 6.49450 6.72677 7.13433 7.48039 7.60628 7.98557 8.16400 8.29660 8.47378 8.94797 9.11220 9.63052 11.11107 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.050370 B = 0.006433 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.757095 B = 4351.200098 C = 4487.070786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.580 5.580 3 C 0.247 3.753 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.595 3.405 13 O -0.520 6.520 14 C 0.161 3.839 15 N -0.479 5.479 16 C 0.176 3.824 17 N -0.313 5.313 18 C 0.088 3.912 19 N -0.263 5.263 20 H 0.047 0.953 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.264 0.736 26 H 0.222 0.778 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 -17.149 2.621 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.312 5.312 3 C 0.128 3.872 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.376 3.624 13 O -0.393 6.393 14 C -0.119 4.119 15 N -0.205 5.205 16 C -0.119 4.119 17 N -0.108 5.108 18 C -0.053 4.053 19 N -0.101 5.101 20 H 0.065 0.935 21 H 0.085 0.915 22 H 0.093 0.907 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.238 0.762 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.101 -16.781 2.531 19.257 hybrid contribution -0.206 -0.069 -0.923 0.948 sum -9.307 -16.850 1.608 19.317 Atomic orbital electron populations 1.21818 0.79935 1.02446 1.01090 1.47940 1.07179 1.06511 1.69543 1.19388 0.92517 0.77526 0.97728 1.21407 1.36502 1.06252 0.92237 0.92379 1.24924 0.95345 0.96335 0.97476 1.69926 1.38443 1.14382 1.30763 0.86538 0.78342 0.77742 0.84686 1.20248 1.21196 1.20166 1.16380 0.85925 0.80821 0.79226 1.90797 1.12870 1.85886 1.49767 1.24337 0.88507 0.93849 1.05217 1.71579 1.13916 1.15248 1.19759 1.26569 0.93870 0.88718 1.02734 1.47372 1.05967 1.08619 1.48875 1.22153 1.05657 0.73021 1.04443 1.74386 1.16970 0.99194 1.19540 0.93483 0.91484 0.90729 0.94374 0.93773 0.92681 0.76197 0.89473 0.88411 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.72 9.31 59.85 0.56 2.28 15 2 N -0.58 -13.85 2.86 -184.07 -0.53 -14.38 15 3 C 0.25 6.83 5.10 -5.19 -0.03 6.80 15 4 C -0.53 -15.58 9.39 -34.44 -0.32 -15.90 15 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 15 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 15 7 N -0.90 -27.28 13.29 55.43 0.74 -26.54 15 8 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 15 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15 12 C 0.60 14.54 7.67 -12.32 -0.09 14.45 15 13 O -0.52 -14.69 16.72 5.32 0.09 -14.60 15 14 C 0.16 3.23 7.57 -156.35 -1.18 2.05 15 15 N -0.48 -7.76 8.13 -12.36 -0.10 -7.86 15 16 C 0.18 1.98 12.62 -90.49 -1.14 0.83 15 17 N -0.31 -3.79 3.72 -69.40 -0.26 -4.05 15 18 C 0.09 0.51 11.38 59.84 0.68 1.19 15 19 N -0.26 -4.75 12.09 32.08 0.39 -4.37 15 20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.07 1.25 8.04 -51.93 -0.42 0.83 15 22 H 0.07 1.34 5.86 -51.93 -0.30 1.03 15 23 H 0.04 1.05 8.07 -51.93 -0.42 0.63 15 24 H 0.04 1.35 7.50 -51.93 -0.39 0.96 15 25 H 0.26 7.56 8.31 -40.82 -0.34 7.23 15 26 H 0.22 1.15 8.06 -52.49 -0.42 0.73 15 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 15 28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 15 29 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 15 LS Contribution 262.36 15.07 3.95 3.95 Total: -1.00 -37.87 262.36 -5.56 -43.42 By element: Atomic # 1 Polarization: -3.32 SS G_CDS: -3.19 Total: -6.51 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: -1.63 Total: 13.40 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.24 Total: -57.19 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.09 Total: -14.60 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -37.87 -5.56 -43.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347475814.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.612 kcal (2) G-P(sol) polarization free energy of solvation -37.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds