Wall clock time and date at job start Sun Mar 29 2020 22:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00555 * 2 1 4 4 H 1.48512 * 109.46746 * 269.99923 * 3 2 1 5 5 H 1.48501 * 109.47074 * 29.99333 * 3 2 1 6 6 H 1.48499 * 109.47450 * 149.99881 * 3 2 1 7 7 C 1.37885 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99645 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47067 * 299.99165 * 9 7 2 11 11 O 1.45200 * 109.47024 * 179.97438 * 9 7 2 12 12 C 1.34226 * 117.00244 * 149.99754 * 11 9 7 13 13 O 1.20828 * 120.00108 * 359.97438 * 12 11 9 14 14 C 1.50696 * 120.00290 * 180.02562 * 12 11 9 15 15 C 1.53786 * 113.61159 * 279.13666 * 14 12 11 16 16 C 1.53961 * 87.01859 * 220.04640 * 15 14 12 17 17 C 1.53780 * 87.11007 * 25.36274 * 16 15 14 18 18 C 1.52996 * 109.47519 * 59.99391 * 9 7 2 19 19 C 1.53002 * 117.49888 * 116.25436 * 18 9 7 20 20 C 1.53000 * 117.50107 * 184.91198 * 18 9 7 21 21 H 0.97007 * 119.99127 * 0.02562 * 1 2 3 22 22 H 1.08999 * 112.85023 * 50.32857 * 14 12 11 23 23 H 1.09004 * 113.61286 * 334.56462 * 15 14 12 24 24 H 1.08999 * 113.61414 * 105.46922 * 15 14 12 25 25 H 1.08997 * 113.53253 * 270.80716 * 16 15 14 26 26 H 1.08998 * 113.66444 * 139.93333 * 16 15 14 27 27 H 1.09000 * 113.61090 * 220.09384 * 17 16 15 28 28 H 1.08994 * 113.69333 * 89.19878 * 17 16 15 29 29 H 1.09002 * 115.54951 * 330.58409 * 18 9 7 30 30 H 1.09000 * 117.49996 * 215.00804 * 19 18 9 31 31 H 1.08999 * 117.49664 * 0.02562 * 19 18 9 32 32 H 1.09008 * 117.49673 * 359.97438 * 20 18 9 33 33 H 1.08999 * 117.49959 * 144.99502 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8904 11 8 2.1943 -3.6029 0.0005 12 6 1.8030 -4.7391 0.5985 13 8 0.7086 -4.8090 1.1057 14 6 2.7292 -5.9272 0.6385 15 6 2.7342 -6.7483 -0.6618 16 6 2.7867 -8.0047 0.2265 17 6 2.1195 -7.1607 1.3253 18 6 0.3716 -2.5804 -1.2489 19 6 0.6821 -3.6854 -2.2607 20 6 -0.5640 -3.7842 -1.3773 21 1 -0.4849 0.8402 -0.0004 22 1 3.7262 -5.6747 0.9993 23 1 1.8132 -6.6591 -1.2381 24 1 3.6290 -6.6025 -1.2668 25 1 3.8000 -8.3210 0.4735 26 1 2.1632 -8.8224 -0.1351 27 1 2.5190 -7.3474 2.3221 28 1 1.0303 -7.1838 1.2946 29 1 0.0194 -1.6254 -1.6388 30 1 0.5343 -3.4573 -3.3162 31 1 1.5126 -4.3546 -2.0359 32 1 -0.5528 -4.5185 -0.5718 33 1 -1.5318 -3.6211 -1.8516 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347936914.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:58 Heat of formation + Delta-G solvation = -65.789335 kcal Electronic energy + Delta-G solvation = -15888.515988 eV Core-core repulsion = 13300.998237 eV Total energy + Delta-G solvation = -2587.517751 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.73461 -39.36055 -37.81955 -36.48197 -34.89330 -30.19194 -27.93923 -26.57278 -25.29018 -23.24674 -22.68568 -20.97662 -20.26690 -18.91162 -18.51321 -17.65314 -17.24549 -16.48795 -16.24427 -15.62983 -14.81860 -14.46482 -14.12615 -13.45690 -13.38459 -13.29420 -13.11084 -12.95726 -12.81284 -12.35283 -12.27492 -12.13678 -11.95752 -11.45479 -11.35886 -11.31728 -11.20403 -10.96260 -10.49411 -10.45119 -8.28263 -6.45239 1.34981 1.40765 1.42709 1.53738 2.06805 2.42578 2.99872 3.12556 3.50726 3.63837 3.85734 3.91419 4.04831 4.19766 4.25387 4.27770 4.66784 4.72167 4.77922 4.84337 4.90899 4.97089 5.03037 5.10941 5.15306 5.23063 5.27496 5.49739 5.51912 5.55253 5.90353 6.12767 6.60695 7.01946 7.26395 8.79282 Molecular weight = 224.12amu Principal moments of inertia in cm(-1) A = 0.039819 B = 0.007873 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.020612 B = 3555.673740 C = 3831.141427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.018 3.982 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.252 3.748 10 H 0.002 0.998 11 O -0.359 6.359 12 C 0.450 3.550 13 O -0.549 6.549 14 C -0.121 4.121 15 C -0.122 4.122 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.144 4.144 19 C -0.166 4.166 20 C -0.200 4.200 21 H 0.269 0.731 22 H 0.139 0.861 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 -12.240 -2.139 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.199 3.801 10 H 0.020 0.980 11 O -0.275 6.275 12 C 0.296 3.704 13 O -0.441 6.441 14 C -0.140 4.140 15 C -0.160 4.160 16 C -0.155 4.155 17 C -0.161 4.161 18 C -0.163 4.163 19 C -0.203 4.203 20 C -0.236 4.236 21 H 0.078 0.922 22 H 0.157 0.843 23 H 0.090 0.910 24 H 0.115 0.885 25 H 0.128 0.872 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.688 -12.098 -2.003 13.518 hybrid contribution -0.364 1.321 0.277 1.398 sum 5.323 -10.777 -1.727 12.144 Atomic orbital electron populations 1.70133 1.07479 1.28342 1.49143 1.25831 0.95906 1.02823 0.93680 0.85231 0.78376 0.77263 0.78844 1.19160 1.20343 1.18925 1.21271 0.93991 0.89761 1.53471 0.91516 1.19707 0.86081 0.81537 0.92767 0.98035 1.86500 1.48521 1.22636 1.69819 1.24540 0.87265 0.85046 0.73570 1.90534 1.24690 1.83777 1.45102 1.22912 0.99417 0.88484 1.03141 1.22924 1.03440 0.95160 0.94439 1.22821 1.02582 0.95734 0.94326 1.22917 1.00718 0.92471 0.99992 1.22684 1.00951 0.93627 0.99056 1.22906 0.98442 1.02372 0.96534 1.23112 0.94922 1.02465 1.03148 0.92159 0.84349 0.91021 0.88536 0.87153 0.89546 0.89357 0.90931 0.88165 0.87744 0.89069 0.89821 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.49 11.66 21.45 0.25 -53.24 16 2 C 0.02 0.99 5.16 84.66 0.44 1.43 16 3 Si 0.98 43.43 29.54 68.60 2.03 45.45 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.55 -31.70 8.90 25.60 0.23 -31.47 16 8 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 9 C 0.25 14.11 2.39 29.85 0.07 14.19 16 10 H 0.00 0.13 7.16 -2.39 -0.02 0.11 16 11 O -0.36 -17.45 8.49 -51.38 -0.44 -17.88 16 12 C 0.45 19.07 6.33 71.23 0.45 19.52 16 13 O -0.55 -26.63 12.86 21.96 0.28 -26.35 16 14 C -0.12 -3.47 4.25 -11.01 -0.05 -3.51 16 15 C -0.12 -2.78 7.64 31.18 0.24 -2.55 16 16 C -0.12 -2.00 8.09 31.18 0.25 -1.75 16 17 C -0.12 -2.96 7.40 31.12 0.23 -2.73 16 18 C -0.14 -7.42 5.23 -10.79 -0.06 -7.47 16 19 C -0.17 -6.86 9.74 30.62 0.30 -6.57 16 20 C -0.20 -8.92 9.87 30.62 0.30 -8.61 16 21 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 22 H 0.14 3.39 8.14 -2.39 -0.02 3.37 16 23 H 0.07 1.85 8.09 -2.38 -0.02 1.83 16 24 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 2.08 7.45 -2.39 -0.02 2.06 16 29 H 0.10 5.65 6.55 -2.39 -0.02 5.64 16 30 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 31 H 0.09 3.63 6.66 -2.39 -0.02 3.61 16 32 H 0.08 3.94 5.56 -2.38 -0.01 3.93 16 33 H 0.09 3.80 8.14 -2.39 -0.02 3.78 16 Total: -1.00 -67.67 273.46 5.62 -62.05 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 1.09 Total: 19.49 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 2.40 Total: -29.53 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.25 Total: -53.24 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -0.15 Total: -44.23 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -67.67 5.62 -62.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936914.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.738 kcal (2) G-P(sol) polarization free energy of solvation -67.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds