Wall clock time and date at job start Sun Mar 29 2020 21:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.34900 * 126.10788 * 274.99757 * 4 2 1 6 6 O 1.34901 * 107.21631 * 179.97438 * 5 4 2 7 7 C 1.34307 * 107.71229 * 359.97438 * 6 5 4 8 8 N 1.37751 * 125.68644 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99948 * 0.03768 * 8 7 6 10 10 O 1.21816 * 120.00401 * 359.97438 * 9 8 7 11 11 C 1.41366 * 119.99941 * 179.97438 * 9 8 7 12 12 H 1.08001 * 120.00154 * 359.97438 * 11 9 8 13 13 C 1.40159 * 119.99927 * 179.97438 * 11 9 8 14 14 N 1.30617 * 120.00381 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99765 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47303 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46728 * 120.00700 * 15 13 11 18 18 H 1.48497 * 109.47259 * 240.00197 * 15 13 11 19 19 N 1.31363 * 108.62280 * 359.75449 * 7 6 5 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.08002 * 126.39354 * 0.02562 * 5 4 2 28 28 H 0.96998 * 119.99830 * 180.02562 * 8 7 6 29 29 H 0.96995 * 120.00477 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.2079 -0.1609 2.4499 6 8 2.6687 -1.1332 3.2635 7 6 2.7689 -2.2593 2.5385 8 7 3.2038 -3.4799 3.0059 9 6 3.5734 -3.6151 4.2949 10 8 3.5232 -2.6579 5.0466 11 6 4.0192 -4.8679 4.7747 12 1 4.0634 -5.7168 4.1085 13 6 4.4041 -5.0084 6.1151 14 7 4.3503 -3.9819 6.9211 15 14 4.9925 -6.6640 6.7493 16 1 4.9599 -7.6569 5.6456 17 1 6.3821 -6.5341 7.2568 18 1 4.1041 -7.1169 7.8496 19 7 2.3784 -2.0038 1.3105 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 2.0146 0.8658 2.7238 28 1 3.2440 -4.2422 2.4073 29 1 4.6162 -4.0792 7.8488 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001449906632.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:58 Heat of formation + Delta-G solvation = -50.722280 kcal Electronic energy + Delta-G solvation = -14982.585427 eV Core-core repulsion = 12292.180689 eV Total energy + Delta-G solvation = -2690.404738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.10313 -39.90463 -37.21945 -35.88330 -34.82146 -34.07318 -30.01042 -28.56666 -27.87239 -24.59682 -23.79196 -22.44706 -20.56881 -19.48695 -18.47992 -17.69078 -17.66627 -17.08323 -16.11940 -15.68806 -15.06922 -14.96172 -14.73123 -14.35146 -13.85627 -13.32888 -12.98053 -12.89565 -12.84085 -12.46031 -12.29096 -12.04537 -11.98675 -11.85498 -11.38041 -11.21068 -10.97365 -10.21404 -8.93892 -8.51541 -7.17845 0.64204 1.37754 1.38893 1.53186 1.62597 1.71100 2.19979 2.35559 2.63601 3.47913 3.66388 3.93720 4.22869 4.34254 4.45676 4.60746 4.85492 4.88179 5.00095 5.09571 5.14087 5.16585 5.30597 5.42425 5.50439 5.65815 5.87914 5.89403 6.59166 6.69128 7.29097 8.14633 8.42065 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.081579 B = 0.005729 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.144226 B = 4886.645127 C = 5076.397591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.010 4.010 3 C -0.140 4.140 4 C 0.010 3.990 5 C -0.133 4.133 6 O -0.215 6.215 7 C 0.426 3.574 8 N -0.627 5.627 9 C 0.517 3.483 10 O -0.601 6.601 11 C -0.547 4.547 12 H 0.104 0.896 13 C 0.029 3.971 14 N -0.795 5.795 15 Si 1.011 2.989 16 H -0.241 1.241 17 H -0.266 1.266 18 H -0.266 1.266 19 N -0.546 5.546 20 H 0.089 0.911 21 H 0.057 0.943 22 H 0.039 0.961 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.240 0.760 28 H 0.431 0.569 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.996 4.141 -10.345 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.111 4.111 5 C -0.204 4.204 6 O -0.100 6.100 7 C 0.130 3.870 8 N -0.287 5.287 9 C 0.328 3.672 10 O -0.486 6.486 11 C -0.582 4.582 12 H 0.122 0.878 13 C -0.190 4.190 14 N -0.423 5.423 15 Si 0.829 3.171 16 H -0.164 1.164 17 H -0.190 1.190 18 H -0.190 1.190 19 N -0.287 5.287 20 H 0.108 0.892 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.256 0.744 28 H 0.272 0.728 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.983 4.424 -9.983 11.623 hybrid contribution 0.330 -0.396 0.854 0.997 sum -3.653 4.028 -9.129 10.626 Atomic orbital electron populations 1.21794 0.92742 1.01606 1.03240 1.19593 0.96507 0.95568 0.91218 1.21851 1.00955 0.93257 1.03728 1.22213 1.02380 0.89124 0.97394 1.25327 1.10055 0.95108 0.89895 1.84741 1.66051 1.18383 1.40847 1.22268 0.96053 0.84265 0.84390 1.43227 1.66087 1.05630 1.13796 1.17706 0.79522 0.91355 0.78629 1.90719 1.60033 1.42574 1.55260 1.20495 1.44734 0.95475 0.97448 0.87822 1.27176 0.92632 1.03070 0.96129 1.70150 1.32287 1.33724 1.06128 0.84765 0.78182 0.75142 0.79007 1.16365 1.19029 1.19028 1.70623 1.25118 1.17768 1.15197 0.89231 0.92369 0.94147 0.89876 0.91581 0.93167 0.89294 0.74389 0.72820 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.18 71.98 0.66 -2.18 15 2 C -0.01 -0.24 3.37 -11.54 -0.04 -0.28 15 3 C -0.14 -2.56 8.78 71.98 0.63 -1.93 15 4 C 0.01 0.35 6.04 41.44 0.25 0.60 15 5 C -0.13 -4.98 11.35 67.05 0.76 -4.22 15 6 O -0.21 -10.86 9.06 12.53 0.11 -10.74 15 7 C 0.43 20.82 8.86 179.13 1.59 22.41 15 8 N -0.63 -30.89 5.34 -432.87 -2.31 -33.21 15 9 C 0.52 30.20 7.51 85.01 0.64 30.84 15 10 O -0.60 -40.50 13.60 16.30 0.22 -40.28 15 11 C -0.55 -29.59 9.29 23.51 0.22 -29.37 15 12 H 0.10 4.86 7.85 -2.91 -0.02 4.83 15 13 C 0.03 1.54 5.50 85.34 0.47 2.01 15 14 N -0.80 -46.47 11.72 21.85 0.26 -46.21 15 15 Si 1.01 38.02 29.56 68.60 2.03 40.05 15 16 H -0.24 -8.26 7.11 99.48 0.71 -7.56 15 17 H -0.27 -9.62 7.11 99.48 0.71 -8.91 15 18 H -0.27 -9.62 7.11 99.48 0.71 -8.91 15 19 N -0.55 -23.34 11.33 -301.60 -3.42 -26.76 15 20 H 0.09 1.32 8.14 -2.39 -0.02 1.30 15 21 H 0.06 1.18 8.14 -2.39 -0.02 1.16 15 22 H 0.04 0.97 8.14 -2.38 -0.02 0.96 15 23 H 0.08 2.05 8.14 -2.39 -0.02 2.03 15 24 H 0.07 1.09 7.29 -2.39 -0.02 1.08 15 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 15 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 15 27 H 0.24 6.55 7.38 -2.91 -0.02 6.52 15 28 H 0.43 17.87 8.77 -92.71 -0.81 17.06 15 29 H 0.28 14.77 8.29 -92.71 -0.77 14.00 15 Total: -1.00 -76.03 260.24 2.43 -73.60 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.36 Total: 25.68 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 5.18 Total: 17.87 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -5.47 Total: -106.17 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: 0.34 Total: -51.03 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -76.03 2.43 -73.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449906632.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.876 kcal (2) G-P(sol) polarization free energy of solvation -76.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds