Wall clock time and date at job start Sun Mar 29 2020 21:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35456 * 126.77673 * 2 1 4 4 C 1.41381 * 103.98449 * 180.10363 * 3 2 1 5 5 C 1.50704 * 126.79830 * 179.89178 * 4 3 2 6 6 N 1.46898 * 109.47041 * 94.70783 * 5 4 3 7 7 C 1.46906 * 110.99888 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47378 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47473 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47239 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99960 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99798 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99830 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00071 * 0.02562 * 12 10 9 15 15 H 1.48508 * 109.47012 * 89.99724 * 14 12 10 16 16 H 1.48499 * 109.47078 * 209.99436 * 14 12 10 17 17 H 1.48496 * 109.47022 * 329.99978 * 14 12 10 18 18 N 1.30167 * 106.39613 * 359.62451 * 4 3 2 19 19 O 1.20924 * 111.60826 * 0.24607 * 18 4 3 20 20 H 1.09006 * 109.46804 * 180.29839 * 1 2 3 21 21 H 1.09000 * 109.46825 * 300.29458 * 1 2 3 22 22 H 1.08992 * 109.47549 * 60.29840 * 1 2 3 23 23 H 1.08002 * 128.00427 * 359.96319 * 3 2 1 24 24 H 1.08997 * 109.46924 * 334.70695 * 5 4 3 25 25 H 1.08995 * 109.46962 * 214.70849 * 5 4 3 26 26 H 1.00904 * 110.99913 * 303.95016 * 6 5 4 27 27 H 1.09004 * 109.47040 * 299.99934 * 7 6 5 28 28 H 1.09000 * 109.47033 * 59.99886 * 7 6 5 29 29 H 1.09004 * 109.46862 * 299.99897 * 8 7 6 30 30 H 1.09004 * 109.46998 * 59.99419 * 8 7 6 31 31 H 1.08996 * 109.47261 * 300.00171 * 9 8 7 32 32 H 1.09000 * 109.46870 * 59.99782 * 9 8 7 33 33 H 0.96992 * 120.00108 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 -0.0025 5 6 4.9210 1.3001 -0.0058 6 7 5.4039 1.4508 1.3733 7 6 6.6724 2.1909 1.4091 8 6 7.1429 2.3269 2.8585 9 6 8.4643 3.0971 2.8957 10 6 8.9274 3.2315 4.3235 11 1 8.3383 2.8095 5.1243 12 6 10.1037 3.8925 4.6073 13 7 10.5080 4.0094 5.8533 14 14 11.1229 4.6219 3.2222 15 1 10.6883 6.0195 2.9708 16 1 12.5577 4.6110 3.6047 17 1 10.9328 3.8152 1.9901 18 7 3.4763 -0.7563 0.0045 19 8 2.3095 -1.0736 0.0059 20 1 -0.3633 -1.0277 0.0054 21 1 -0.3633 0.5184 0.8873 22 1 -0.3634 0.5091 -0.8926 23 1 2.0344 2.1271 -0.0005 24 1 4.7631 2.2850 -0.4452 25 1 5.6607 0.7550 -0.5922 26 1 4.7085 1.8963 1.9532 27 1 7.4240 1.6516 0.8326 28 1 6.5270 3.1820 0.9794 29 1 6.3913 2.8660 3.4354 30 1 7.2882 1.3356 3.2878 31 1 9.2156 2.5577 2.3190 32 1 8.3193 4.0883 2.4662 33 1 11.3357 4.4741 6.0530 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044724576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:31 Heat of formation + Delta-G solvation = 44.518935 kcal Electronic energy + Delta-G solvation = -14389.962076 eV Core-core repulsion = 11839.520401 eV Total energy + Delta-G solvation = -2550.441675 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.03615 -36.93551 -34.56655 -33.68429 -32.91621 -31.26543 -28.05714 -27.68786 -25.09722 -23.10027 -22.05779 -20.54962 -19.79408 -17.74686 -17.31325 -16.71786 -15.82161 -14.86147 -14.63075 -14.08284 -14.04838 -13.85599 -13.58747 -13.40022 -12.78656 -12.61006 -12.11345 -11.84483 -11.75121 -11.18344 -10.94118 -10.77562 -10.38551 -9.93240 -9.73354 -9.58897 -9.45988 -9.15957 -8.51842 -8.33774 -6.02014 -3.99816 1.32778 2.07390 2.95860 3.31603 3.39103 3.43125 4.02050 4.21062 4.47004 4.51906 4.84364 4.93663 5.03424 5.08099 5.29646 5.31739 5.33778 5.53942 5.62384 5.66228 5.77779 5.89511 6.14497 6.51587 6.56304 6.91318 7.11213 7.35436 7.41934 7.50090 7.82183 8.19713 8.57235 9.03593 9.60444 11.11648 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.069630 B = 0.003835 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.029183 B = 7299.721340 C = 7431.927084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.038 4.038 3 C -0.233 4.233 4 C 0.025 3.975 5 C 0.135 3.865 6 N -0.684 5.684 7 C 0.058 3.942 8 C -0.100 4.100 9 C -0.012 4.012 10 C -0.519 4.519 11 H 0.072 0.928 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.881 3.119 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.265 1.265 18 N -0.348 5.348 19 O 0.100 5.900 20 H 0.082 0.918 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.169 0.831 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.341 0.659 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.016 0.984 32 H 0.009 0.991 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.638 -4.860 -14.559 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.255 4.255 4 C -0.134 4.134 5 C 0.005 3.995 6 N -0.316 5.316 7 C -0.071 4.071 8 C -0.138 4.138 9 C -0.050 4.050 10 C -0.557 4.557 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.709 3.291 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.190 1.190 18 N -0.050 5.050 19 O 0.032 5.968 20 H 0.101 0.899 21 H 0.108 0.892 22 H 0.107 0.893 23 H 0.187 0.813 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.159 0.841 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.028 0.972 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.313 -6.440 -14.441 24.194 hybrid contribution 0.004 2.191 -0.754 2.317 sum -18.308 -4.248 -15.195 24.169 Atomic orbital electron populations 1.20320 0.84136 1.04611 1.04005 1.24491 0.96375 0.86341 1.02984 1.22432 0.91536 1.00988 1.10506 1.23494 0.96950 0.90054 1.02928 1.20188 0.90136 0.96881 0.92298 1.60480 1.06617 1.56393 1.08151 1.22190 0.89951 0.94847 1.00073 1.21449 0.98586 1.01235 0.92497 1.19541 0.92791 0.94742 0.97965 1.21156 1.07188 1.35706 0.91671 0.91022 1.25049 0.97413 0.95780 0.95383 1.69917 1.23069 1.43344 1.18069 0.86757 0.79441 0.79792 0.83157 1.20374 1.21397 1.19008 1.73874 0.96380 1.16528 1.18268 1.84858 1.11453 1.33240 1.67287 0.89935 0.89192 0.89311 0.81331 0.93024 0.89356 0.84085 0.91194 0.95448 0.92978 0.91842 0.96552 0.97243 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.45 36.00 0.38 0.04 16 2 C -0.04 -0.36 7.49 -35.30 -0.26 -0.62 16 3 C -0.23 -2.33 11.06 -39.38 -0.44 -2.77 16 4 C 0.03 0.33 6.84 -82.10 -0.56 -0.24 16 5 C 0.13 1.72 6.27 -4.97 -0.03 1.69 16 6 N -0.68 -10.23 6.49 -115.06 -0.75 -10.98 16 7 C 0.06 0.95 5.69 -3.82 -0.02 0.93 16 8 C -0.10 -2.03 5.41 -26.74 -0.14 -2.17 16 9 C -0.01 -0.30 4.04 -27.89 -0.11 -0.42 16 10 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 11 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 12 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 13 N -0.90 -28.43 13.96 55.43 0.77 -27.66 16 14 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.27 -6.37 6.54 56.52 0.37 -6.01 16 18 N -0.35 -5.06 12.07 33.42 0.40 -4.66 16 19 O 0.10 1.23 11.20 17.17 0.19 1.42 16 20 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 21 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.34 4.78 8.72 -39.29 -0.34 4.44 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 32 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 285.44 15.07 4.30 4.30 Total: -1.00 -33.15 285.44 -6.29 -39.45 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.92 Total: -2.02 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -1.63 Total: -17.23 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.43 Total: -43.30 kcal Atomic # 8 Polarization: 1.23 SS G_CDS: 0.19 Total: 1.42 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.15 -6.29 -39.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044724576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.967 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds