Wall clock time and date at job start Sun Mar 29 2020 22:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.43655 * 325.70109 * 11 10 9 13 13 C 1.54989 * 110.48903 * 88.24592 * 11 10 9 14 14 C 1.55190 * 104.93278 * 116.18172 * 13 11 10 15 15 N 1.47093 * 103.52712 * 336.00871 * 14 13 11 16 16 C 1.45677 * 116.52806 * 162.38681 * 15 14 13 17 17 C 1.53618 * 107.80551 * 177.35313 * 16 15 14 18 18 C 1.52815 * 110.71407 * 57.37238 * 17 16 15 19 19 C 1.53672 * 110.60440 * 306.25691 * 18 17 16 20 20 C 1.49071 * 103.72471 * 42.25003 * 15 14 13 21 21 H 1.09000 * 110.37199 * 73.76871 * 20 15 14 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 24 24 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 25 25 H 1.00902 * 111.00178 * 56.04567 * 10 9 7 26 26 H 1.09005 * 110.34401 * 235.04143 * 13 11 10 27 27 H 1.08992 * 110.35137 * 357.20747 * 13 11 10 28 28 H 1.09004 * 110.61336 * 94.51409 * 14 13 11 29 29 H 1.08992 * 110.61146 * 217.49391 * 14 13 11 30 30 H 1.08999 * 109.78717 * 296.92906 * 16 15 14 31 31 H 1.09000 * 109.79209 * 57.71768 * 16 15 14 32 32 H 1.09005 * 109.22961 * 177.69051 * 17 16 15 33 33 H 1.09001 * 109.22906 * 297.08950 * 17 16 15 34 34 H 1.08995 * 109.25353 * 66.54640 * 18 17 16 35 35 H 1.09003 * 109.25286 * 186.00784 * 18 17 16 36 36 H 1.09001 * 109.83798 * 175.63924 * 19 18 17 37 37 H 1.09007 * 109.83468 * 296.54283 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 1 0.5816 -4.8392 0.5757 13 6 1.2094 -5.3629 -1.4502 14 6 2.0259 -6.6699 -1.6333 15 7 3.1023 -6.5452 -0.6386 16 6 3.8051 -7.7708 -0.2833 17 6 4.9194 -7.4029 0.7081 18 6 4.3401 -6.7031 1.9369 19 6 3.4812 -5.4993 1.5190 20 6 2.4095 -6.0076 0.5669 21 1 1.8084 -6.7856 1.0376 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8897 25 1 2.8400 -3.5482 0.7836 26 1 0.1447 -5.5605 -1.5757 27 1 1.5398 -4.6051 -2.1605 28 1 1.4070 -7.5419 -1.4215 29 1 2.4387 -6.7265 -2.6404 30 1 3.1125 -8.4714 0.1832 31 1 4.2384 -8.2201 -1.1769 32 1 5.4351 -8.3106 1.0217 33 1 5.6302 -6.7373 0.2184 34 1 3.7237 -7.4080 2.4948 35 1 5.1561 -6.3583 2.5722 36 1 3.0124 -5.0565 2.3978 37 1 4.1030 -4.7573 1.0181 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049565341.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:11 Heat of formation + Delta-G solvation = -2.845745 kcal Electronic energy + Delta-G solvation = -16073.117281 eV Core-core repulsion = 13656.454814 eV Total energy + Delta-G solvation = -2416.662467 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90281 -35.61844 -34.16596 -32.68473 -30.51643 -29.00844 -26.85787 -24.77264 -22.98659 -22.06955 -21.44056 -20.24233 -18.94089 -16.92134 -15.76888 -15.39007 -14.93247 -14.50577 -14.11693 -13.76187 -13.61866 -13.17055 -12.82430 -12.61165 -12.39846 -11.75840 -11.61688 -11.25183 -11.02133 -10.87512 -10.77700 -10.58401 -10.50266 -10.31620 -10.20268 -10.10072 -9.98500 -8.55876 -8.37484 -8.20918 -7.28693 -6.33415 -4.01665 3.47438 3.50418 3.68681 4.10387 4.56903 4.72774 4.77094 4.94005 5.09628 5.21797 5.31171 5.35727 5.43336 5.44101 5.45980 5.61737 5.63939 5.76805 5.90874 5.95261 5.99682 6.07507 6.15984 6.21396 6.26004 6.33580 6.54356 6.68557 6.99638 7.12220 7.21793 7.41129 7.89747 8.23842 8.56627 8.64523 8.92375 9.70157 11.06415 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.039107 B = 0.006558 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.810236 B = 4268.351927 C = 4654.944889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.073 2.927 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.593 4.593 8 H 0.056 0.944 9 C 0.183 3.817 10 N -0.667 5.667 11 C 0.088 3.912 12 H 0.038 0.962 13 C -0.112 4.112 14 C 0.048 3.952 15 N -0.512 5.512 16 C 0.054 3.946 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.112 4.112 20 C 0.066 3.934 21 H 0.045 0.955 22 H 0.266 0.734 23 H -0.027 1.027 24 H 0.017 0.983 25 H 0.335 0.665 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.182 -15.369 1.459 16.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.631 4.631 8 H 0.074 0.926 9 C 0.056 3.944 10 N -0.301 5.301 11 C -0.024 4.024 12 H 0.056 0.944 13 C -0.151 4.151 14 C -0.080 4.080 15 N -0.237 5.237 16 C -0.075 4.075 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.043 4.043 21 H 0.063 0.937 22 H 0.076 0.924 23 H -0.010 1.010 24 H 0.035 0.965 25 H 0.155 0.845 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.486 -13.397 0.566 14.895 hybrid contribution -0.850 -2.436 1.144 2.822 sum 5.636 -15.833 1.709 16.893 Atomic orbital electron populations 1.70794 1.06890 1.30366 1.47125 1.25854 0.96499 1.02733 0.93900 0.83486 0.74770 0.75079 0.76540 1.20884 1.21501 1.21372 1.22013 0.94813 0.91305 1.54996 0.92618 1.19696 0.91310 0.89175 0.94231 1.60662 1.20126 0.99857 1.49437 1.22011 0.94496 0.90830 0.95032 0.94393 1.22651 0.97888 0.96461 0.98085 1.22792 0.91879 0.96873 0.96503 1.63979 1.25870 1.26254 1.07586 1.22020 0.96051 0.90963 0.98418 1.21563 0.97769 1.00084 0.95669 1.21559 0.99328 0.97292 0.97252 1.21490 0.97277 0.98130 0.98104 1.22577 0.94077 0.96341 0.91278 0.93741 0.92356 1.00987 0.96483 0.84493 0.92363 0.89533 0.95105 0.90506 0.95539 0.91077 0.92140 0.91025 0.92916 0.91886 0.91810 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.46 13.65 55.43 0.76 -27.70 16 2 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 3 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.59 -17.32 9.32 -34.44 -0.32 -17.64 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.18 4.88 4.61 -4.98 -0.02 4.86 16 10 N -0.67 -14.81 6.10 -106.74 -0.65 -15.46 16 11 C 0.09 1.63 3.29 -66.53 -0.22 1.41 16 12 H 0.04 0.73 7.85 -51.93 -0.41 0.33 16 13 C -0.11 -1.90 6.82 -24.52 -0.17 -2.07 16 14 C 0.05 0.68 6.71 -2.56 -0.02 0.67 16 15 N -0.51 -7.66 4.85 -224.30 -1.09 -8.75 16 16 C 0.05 0.66 5.87 -4.16 -0.02 0.64 16 17 C -0.11 -1.27 6.05 -26.51 -0.16 -1.44 16 18 C -0.12 -1.37 5.95 -26.48 -0.16 -1.53 16 19 C -0.11 -1.63 4.38 -26.84 -0.12 -1.75 16 20 C 0.07 1.02 2.46 -66.83 -0.16 0.85 16 21 H 0.04 0.66 7.99 -51.93 -0.41 0.24 16 22 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 23 H -0.03 -0.76 7.94 -51.93 -0.41 -1.18 16 24 H 0.02 0.48 8.01 -51.93 -0.42 0.07 16 25 H 0.33 7.18 5.78 -39.29 -0.23 6.95 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.09 1.67 7.97 -51.93 -0.41 1.26 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.03 0.31 7.99 -51.93 -0.41 -0.10 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.48 6.85 -51.93 -0.36 1.12 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -31.00 285.41 -9.60 -40.59 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.37 Total: 2.01 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -1.47 Total: -15.70 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.98 Total: -51.91 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.00 -9.60 -40.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049565341.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.749 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds