Wall clock time and date at job start Sun Mar 29 2020 21:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47028 * 2 1 4 4 N 1.46902 * 109.47225 * 240.00483 * 2 1 3 5 5 C 1.46901 * 111.00248 * 84.99616 * 4 2 1 6 6 C 1.52998 * 109.47178 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47272 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99800 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00074 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00206 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99990 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47086 * 90.00078 * 11 9 7 13 13 H 1.48502 * 109.47072 * 209.99965 * 11 9 7 14 14 H 1.48502 * 109.47034 * 329.99695 * 11 9 7 15 15 C 1.50697 * 109.47476 * 120.00094 * 2 1 3 16 16 N 1.30519 * 126.34476 * 74.99974 * 15 2 1 17 17 N 1.28600 * 109.66808 * 179.73098 * 16 15 2 18 18 C 1.30516 * 109.67696 * 0.44987 * 17 16 15 19 19 N 1.35495 * 107.30468 * 359.55808 * 18 17 16 20 20 C 1.46499 * 126.97946 * 180.26092 * 19 18 17 21 21 H 1.09007 * 109.47028 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46994 * 299.99551 * 1 2 3 23 23 H 1.08997 * 109.47278 * 60.00186 * 1 2 3 24 24 H 1.00904 * 110.99657 * 321.04452 * 4 2 1 25 25 H 1.09006 * 109.46772 * 300.00074 * 5 4 2 26 26 H 1.09000 * 109.47139 * 59.99999 * 5 4 2 27 27 H 1.08999 * 109.47057 * 299.99962 * 6 5 4 28 28 H 1.09004 * 109.46688 * 60.00092 * 6 5 4 29 29 H 0.96993 * 120.00312 * 179.97438 * 10 9 7 30 30 H 1.08002 * 126.35125 * 179.82818 * 18 17 16 31 31 H 1.09004 * 109.47293 * 90.03308 * 20 19 18 32 32 H 1.09007 * 109.47309 * 210.02845 * 20 19 18 33 33 H 1.09000 * 109.47123 * 330.02746 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 6 2.6588 0.4057 -4.7519 8 1 2.3636 1.4380 -4.6359 9 6 3.0939 -0.0536 -5.9769 10 7 3.1490 0.7654 -7.0044 11 14 3.6037 -1.8395 -6.1775 12 1 2.4233 -2.6499 -6.5715 13 1 4.6473 -1.9412 -7.2291 14 1 4.1458 -2.3470 -4.8915 15 6 2.0324 -0.7104 1.2304 16 7 2.0337 -1.9998 1.4328 17 7 2.5397 -2.2563 2.5869 18 6 2.8753 -1.1416 3.1772 19 7 2.5664 -0.1289 2.3316 20 6 2.7687 1.3037 2.5614 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 1.4495 -1.4978 -1.4101 25 1 1.0869 0.6164 -2.5525 26 1 2.7587 1.0463 -2.1183 27 1 3.5903 -0.9270 -3.3692 28 1 1.9182 -1.3564 -3.8030 29 1 3.4555 0.4424 -7.8661 30 1 3.3209 -1.0446 4.1561 31 1 3.7546 1.5943 2.1983 32 1 2.0041 1.8688 2.0281 33 1 2.6979 1.5141 3.6285 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050419528.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:58 Heat of formation + Delta-G solvation = 50.351599 kcal Electronic energy + Delta-G solvation = -15084.886840 eV Core-core repulsion = 12566.990839 eV Total energy + Delta-G solvation = -2517.896000 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.01116 -38.37294 -35.93768 -35.29390 -33.37451 -30.97697 -29.64602 -28.38991 -26.12448 -24.52786 -23.20485 -22.24572 -21.19750 -18.95249 -18.09225 -17.26874 -16.55731 -16.46594 -16.05760 -15.83076 -15.20374 -14.77299 -14.39263 -14.26319 -13.91282 -13.64604 -13.33136 -13.06636 -12.90748 -12.55642 -12.32491 -11.97260 -11.79875 -11.71983 -11.41549 -11.24214 -11.02928 -10.76482 -10.20506 -9.37706 -8.29928 -6.33341 0.91278 1.36127 1.38565 1.51520 1.64100 1.95825 2.36472 3.06265 3.18855 3.39535 3.77844 3.93049 3.97625 4.08844 4.40657 4.44378 4.49001 4.55223 4.62635 4.70385 4.82388 4.95878 4.97450 5.14218 5.27120 5.30378 5.48490 5.63640 5.98604 6.12733 6.23922 6.42291 6.74708 7.31940 7.83135 8.86312 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041590 B = 0.005576 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.084084 B = 5020.541103 C = 5262.270325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.172 3.828 3 H 0.109 0.891 4 N -0.690 5.690 5 C 0.092 3.908 6 C -0.008 4.008 7 C -0.528 4.528 8 H 0.040 0.960 9 C 0.010 3.990 10 N -0.948 5.948 11 Si 0.946 3.054 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.255 1.255 15 C 0.188 3.812 16 N -0.329 5.329 17 N -0.355 5.355 18 C 0.158 3.842 19 N -0.474 5.474 20 C 0.061 3.939 21 H 0.056 0.944 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.347 0.653 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.267 0.733 30 H 0.263 0.737 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.685 2.472 22.214 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.059 3.941 3 H 0.127 0.873 4 N -0.322 5.322 5 C -0.036 4.036 6 C -0.045 4.045 7 C -0.567 4.567 8 H 0.059 0.941 9 C -0.187 4.187 10 N -0.589 5.589 11 Si 0.770 3.230 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.179 1.179 15 C -0.082 4.082 16 N -0.169 5.169 17 N -0.194 5.194 18 C -0.131 4.131 19 N -0.165 5.165 20 C -0.080 4.080 21 H 0.075 0.925 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.166 0.834 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.278 0.722 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.163 1.113 21.979 22.113 hybrid contribution -0.325 0.781 -0.606 1.041 sum -2.488 1.894 21.372 21.600 Atomic orbital electron populations 1.22378 0.93697 1.02995 1.03645 1.19795 0.94073 0.96183 0.84003 0.87304 1.60270 1.58099 1.10227 1.03617 1.21680 0.98985 0.94440 0.88532 1.19451 0.96517 0.95696 0.92877 1.21374 1.43605 0.97215 0.94495 0.94119 1.25877 0.95104 1.02195 0.95511 1.70039 1.49254 1.37674 1.01933 0.85724 0.78708 0.80108 0.78500 1.19140 1.20924 1.17877 1.24946 1.00551 0.90692 0.92014 1.74109 1.19355 1.12882 1.10531 1.74132 1.16686 1.25711 1.02879 1.27222 1.02720 0.82724 1.00394 1.46435 1.45379 1.11109 1.13542 1.22530 1.04815 0.74051 1.06578 0.92510 0.90296 0.90753 0.83358 0.94909 0.91746 0.96560 0.96604 0.92453 0.72156 0.89153 0.88117 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.65 9.14 71.98 0.66 -2.99 16 2 C 0.17 4.40 2.90 44.17 0.13 4.53 16 3 H 0.11 2.35 6.89 -2.38 -0.02 2.33 16 4 N -0.69 -23.03 6.23 -495.44 -3.09 -26.12 16 5 C 0.09 3.48 5.42 86.30 0.47 3.95 16 6 C -0.01 -0.36 4.30 29.85 0.13 -0.23 16 7 C -0.53 -30.30 9.66 25.60 0.25 -30.05 16 8 H 0.04 2.51 7.99 -2.91 -0.02 2.48 16 9 C 0.01 0.61 5.47 84.65 0.46 1.07 16 10 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 11 Si 0.95 45.58 27.47 68.60 1.88 47.46 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 14 H -0.25 -11.89 6.54 99.48 0.65 -11.23 16 15 C 0.19 5.16 6.87 137.98 0.95 6.11 16 16 N -0.33 -11.35 12.21 -50.16 -0.61 -11.96 16 17 N -0.36 -11.15 12.21 -59.99 -0.73 -11.88 16 18 C 0.16 3.18 12.74 180.11 2.30 5.47 16 19 N -0.47 -9.10 3.15 -542.06 -1.71 -10.81 16 20 C 0.06 0.49 10.84 127.77 1.38 1.88 16 21 H 0.06 1.38 8.13 -2.38 -0.02 1.36 16 22 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.07 1.60 7.45 -2.39 -0.02 1.58 16 24 H 0.35 11.80 8.47 -89.69 -0.76 11.04 16 25 H 0.03 1.19 7.44 -2.38 -0.02 1.18 16 26 H 0.06 2.42 8.06 -2.39 -0.02 2.40 16 27 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 28 H 0.02 0.73 7.57 -2.38 -0.02 0.71 16 29 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 30 H 0.26 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.10 0.64 7.46 -2.38 -0.02 0.62 16 33 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -77.62 280.78 3.05 -74.57 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.29 Total: 8.11 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 6.72 Total: -10.27 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -5.84 Total: -119.87 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.88 Total: 47.46 kcal Total: -77.62 3.05 -74.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050419528.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.921 kcal (2) G-P(sol) polarization free energy of solvation -77.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds