Wall clock time and date at job start Sun Mar 29 2020 21:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46728 * 2 1 4 4 C 1.50701 * 109.47228 * 240.00376 * 2 1 3 5 5 H 1.08002 * 119.99473 * 274.87108 * 4 2 1 6 6 C 1.37873 * 120.00248 * 94.87938 * 4 2 1 7 7 N 1.31512 * 120.00044 * 183.87945 * 6 4 2 8 8 Si 1.86800 * 120.00103 * 3.87625 * 6 4 2 9 9 H 1.48504 * 109.46994 * 84.42328 * 8 6 4 10 10 H 1.48498 * 109.47558 * 204.42749 * 8 6 4 11 11 H 1.48500 * 109.47281 * 324.42794 * 8 6 4 12 12 N 1.46903 * 109.47090 * 119.99939 * 2 1 3 13 13 C 1.46902 * 110.99554 * 176.04947 * 12 2 1 14 14 C 1.46901 * 111.00003 * 300.00146 * 12 2 1 15 15 C 1.50693 * 109.46872 * 169.99875 * 14 12 2 16 16 N 1.30835 * 125.96262 * 269.69092 * 15 14 12 17 17 C 1.33251 * 109.82643 * 179.86817 * 16 15 14 18 18 N 1.30713 * 108.94663 * 0.40225 * 17 16 15 19 19 N 1.34428 * 125.95965 * 90.00441 * 15 14 12 20 20 C 1.46506 * 126.82612 * 0.02562 * 19 15 14 21 21 H 1.09003 * 109.47010 * 66.77199 * 1 2 3 22 22 H 1.09006 * 109.46568 * 186.76236 * 1 2 3 23 23 H 1.08992 * 109.47220 * 306.76841 * 1 2 3 24 24 H 0.97003 * 119.99666 * 180.02562 * 7 6 4 25 25 H 1.09003 * 109.46639 * 183.95461 * 13 12 2 26 26 H 1.08993 * 109.47210 * 303.94873 * 13 12 2 27 27 H 1.08998 * 109.47492 * 63.96111 * 13 12 2 28 28 H 1.09003 * 109.47255 * 289.99941 * 14 12 2 29 29 H 1.09004 * 109.47030 * 50.00002 * 14 12 2 30 30 H 1.07996 * 125.51945 * 180.12885 * 17 16 15 31 31 H 1.08999 * 109.47160 * 89.99933 * 20 19 15 32 32 H 1.08994 * 109.47053 * 210.00476 * 20 19 15 33 33 H 1.08998 * 109.46787 * 330.00399 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1375 -1.7852 -1.2283 6 6 2.3579 0.0120 -2.3589 7 7 2.7233 -0.6129 -3.4569 8 14 2.2800 1.8781 -2.3281 9 1 3.5484 2.4174 -1.7753 10 1 2.0853 2.3883 -3.7090 11 1 1.1444 2.3121 -1.4753 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7944 1.1870 14 6 1.5486 -0.0264 2.4211 15 6 1.8579 -0.8911 3.6158 16 7 1.0734 -1.8054 4.1263 17 6 1.6668 -2.3764 5.1739 18 7 2.8387 -1.8250 5.3505 19 7 2.9855 -0.8537 4.3467 20 6 4.1382 0.0262 4.1383 21 1 -0.3633 0.4053 -0.9444 22 1 -0.3633 -1.0206 0.1210 23 1 -0.3633 0.6151 0.8232 24 1 2.9527 -0.1046 -4.2506 25 1 3.8164 -1.3720 2.0500 26 1 3.8070 -1.2914 0.2720 27 1 3.9192 0.2045 1.2301 28 1 2.0518 0.9346 2.5281 29 1 0.4722 0.1324 2.3564 30 1 1.2456 -3.1637 5.7813 31 1 3.9998 0.9468 4.7053 32 1 5.0445 -0.4760 4.4765 33 1 4.2278 0.2626 3.0780 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083971325.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:23 Heat of formation + Delta-G solvation = 104.302421 kcal Electronic energy + Delta-G solvation = -15801.552540 eV Core-core repulsion = 13285.996022 eV Total energy + Delta-G solvation = -2515.556517 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.90591 -37.39735 -33.98268 -32.84511 -31.42528 -29.93070 -28.10157 -26.66901 -24.80314 -23.81627 -21.78997 -20.27309 -19.26687 -17.30227 -16.63675 -16.07199 -15.25887 -14.72109 -14.17218 -14.05704 -13.65990 -13.40639 -13.15463 -12.61294 -12.54256 -12.32723 -11.87521 -11.44347 -11.13688 -10.96264 -10.76334 -10.46441 -10.35128 -9.88656 -9.77618 -9.54493 -9.37734 -9.14911 -8.67451 -7.54057 -6.16922 -4.16532 1.77168 2.46104 3.15335 3.18132 3.28036 3.28340 4.30468 4.31167 4.57577 4.73414 5.02757 5.08122 5.19369 5.27458 5.35997 5.67420 5.77275 5.88271 6.04126 6.29614 6.45646 6.50112 6.52010 6.63086 6.76410 6.87730 6.95244 7.20488 7.51023 7.79082 7.90046 8.33696 8.53646 8.94201 9.45084 10.95782 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.043603 B = 0.007565 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.008663 B = 3700.136058 C = 3844.687839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.182 3.818 3 H 0.004 0.996 4 C -0.504 4.504 5 H 0.083 0.917 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.871 3.129 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.265 1.265 12 N -0.521 5.521 13 C 0.030 3.970 14 C 0.119 3.881 15 C 0.305 3.695 16 N -0.533 5.533 17 C 0.195 3.805 18 N -0.334 5.334 19 N -0.381 5.381 20 C 0.085 3.915 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.023 0.977 24 H 0.265 0.735 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.014 0.986 28 H 0.045 0.955 29 H 0.111 0.889 30 H 0.214 0.786 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.939 3.662 13.072 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.076 3.924 3 H 0.021 0.979 4 C -0.542 4.542 5 H 0.101 0.899 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.698 3.302 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.246 5.246 13 C -0.118 4.118 14 C -0.011 4.011 15 C 0.028 3.972 16 N -0.261 5.261 17 C -0.108 4.108 18 N -0.162 5.162 19 N -0.172 5.172 20 C -0.057 4.057 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.113 0.887 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.129 0.871 30 H 0.230 0.770 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.055 2.988 13.301 13.674 hybrid contribution 0.520 1.896 -0.152 1.972 sum 1.575 4.884 13.150 14.116 Atomic orbital electron populations 1.22019 0.97419 1.00956 0.99054 1.19784 0.92609 0.92005 0.87954 0.97885 1.20848 1.43427 0.96034 0.93902 0.89941 1.24990 0.94573 0.97974 0.95398 1.69884 1.45506 1.35757 1.01961 0.86961 0.78974 0.86769 0.77462 1.20359 1.21278 1.18948 1.62148 1.10017 1.52109 1.00362 1.22442 0.87931 0.98592 1.02860 1.20731 1.03445 0.91298 0.85664 1.24440 0.83144 0.95261 0.94391 1.70510 1.32455 1.11255 1.11858 1.25914 0.89649 0.99840 0.95364 1.77945 1.21007 1.05804 1.11475 1.50249 1.15468 1.28958 1.22560 1.22170 0.86707 0.92605 1.04217 0.92895 0.92262 0.95854 0.92474 0.93947 0.88718 0.96772 0.93695 0.87070 0.76960 0.90581 0.89052 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.76 37.16 0.33 -2.47 16 2 C 0.18 4.06 1.70 -68.86 -0.12 3.95 16 3 H 0.00 0.08 5.36 -51.93 -0.28 -0.20 16 4 C -0.50 -13.38 7.39 -34.44 -0.25 -13.63 16 5 H 0.08 2.46 8.05 -52.49 -0.42 2.04 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 8 Si 0.87 20.31 26.95 -169.99 -4.58 15.73 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.26 -5.89 6.88 56.52 0.39 -5.50 16 12 N -0.52 -10.45 4.61 -237.73 -1.10 -11.55 16 13 C 0.03 0.56 7.72 60.07 0.46 1.02 16 14 C 0.12 2.01 5.00 -4.98 -0.02 1.98 16 15 C 0.30 5.16 6.62 -155.70 -1.03 4.13 16 16 N -0.53 -9.45 11.19 -11.97 -0.13 -9.58 16 17 C 0.20 2.97 13.03 -91.80 -1.20 1.77 16 18 N -0.33 -5.32 12.70 29.29 0.37 -4.95 16 19 N -0.38 -5.84 3.66 -65.10 -0.24 -6.08 16 20 C 0.09 0.95 10.40 59.85 0.62 1.58 16 21 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 23 H 0.02 0.40 6.57 -51.93 -0.34 0.06 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.04 0.73 5.84 -51.93 -0.30 0.43 16 26 H 0.09 2.03 6.82 -51.93 -0.35 1.67 16 27 H 0.01 0.24 7.11 -51.93 -0.37 -0.13 16 28 H 0.05 0.66 7.74 -51.93 -0.40 0.26 16 29 H 0.11 1.84 5.97 -51.93 -0.31 1.53 16 30 H 0.21 2.30 8.06 -52.49 -0.42 1.88 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.11 4.55 -51.93 -0.24 0.88 16 LS Contribution 267.18 15.07 4.03 4.03 Total: -1.00 -31.21 267.18 -6.47 -37.68 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.28 Total: -0.13 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -1.31 Total: 0.22 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.32 Total: -57.53 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.58 Total: 15.73 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.21 -6.47 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083971325.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.983 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds