Wall clock time and date at job start Sun Mar 29 2020 22:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46580 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99800 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.24417 * 35.53713 * 11 10 9 13 13 C 1.52821 * 109.24599 * 276.12337 * 11 10 9 14 14 C 1.53627 * 110.69838 * 185.95804 * 13 11 10 15 15 N 1.45670 * 107.80265 * 57.37196 * 14 13 11 16 16 C 1.47095 * 116.53867 * 177.31725 * 15 14 13 17 17 C 1.55198 * 103.51938 * 162.42735 * 16 15 14 18 18 C 1.54987 * 104.93493 * 336.00183 * 17 16 15 19 19 C 1.48723 * 109.34355 * 294.45017 * 15 14 13 20 20 H 1.08994 * 110.34211 * 309.50922 * 19 15 14 21 21 C 1.52250 * 107.50380 * 69.80066 * 19 15 14 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 24 24 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 25 25 H 1.00898 * 110.99915 * 303.94517 * 10 9 7 26 26 H 1.08998 * 109.23279 * 306.26935 * 13 11 10 27 27 H 1.08999 * 109.23555 * 65.64752 * 13 11 10 28 28 H 1.09002 * 109.79594 * 297.80139 * 14 13 11 29 29 H 1.08994 * 109.79733 * 176.95281 * 14 13 11 30 30 H 1.08999 * 110.61428 * 280.93617 * 16 15 14 31 31 H 1.09001 * 110.60923 * 43.76330 * 16 15 14 32 32 H 1.08993 * 110.34687 * 94.87073 * 17 16 15 33 33 H 1.09006 * 110.34352 * 217.03326 * 17 16 15 34 34 H 1.08993 * 110.49320 * 238.83222 * 18 17 16 35 35 H 1.09005 * 110.48391 * 116.18477 * 18 17 16 36 36 H 1.08998 * 109.83745 * 177.57586 * 21 19 15 37 37 H 1.08997 * 109.84285 * 56.60888 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0010 -2.5792 -0.0001 11 6 5.4695 -2.6185 -0.0001 12 1 5.8511 -1.7910 0.5981 13 6 5.9771 -2.4780 -1.4347 14 6 7.5012 -2.6627 -1.4919 15 7 7.8126 -3.9711 -0.9324 16 6 9.2273 -4.3735 -0.9495 17 6 9.2878 -5.5311 0.0825 18 6 8.0822 -5.2886 1.0259 19 6 7.4594 -3.9858 0.5123 20 1 7.8939 -3.1231 1.0173 21 6 5.9408 -3.9464 0.6128 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6809 0.8904 25 1 3.6252 -3.0956 0.7811 26 1 5.5003 -3.2329 -2.0598 27 1 5.7212 -1.4875 -1.8108 28 1 7.9896 -1.8847 -0.9052 29 1 7.8404 -2.6135 -2.5266 30 1 9.5138 -4.7270 -1.9399 31 1 9.8653 -3.5459 -0.6393 32 1 9.1880 -6.4928 -0.4205 33 1 10.2226 -5.4918 0.6417 34 1 8.4209 -5.1698 2.0550 35 1 7.3680 -6.1086 0.9506 36 1 5.6378 -3.9991 1.6585 37 1 5.5115 -4.7820 0.0600 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155824698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:26 Heat of formation + Delta-G solvation = -0.718345 kcal Electronic energy + Delta-G solvation = -15795.225550 eV Core-core repulsion = 13378.655334 eV Total energy + Delta-G solvation = -2416.570216 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.91889 -36.28815 -33.42402 -32.43242 -31.26827 -28.84534 -27.60991 -25.54303 -22.83599 -21.63159 -21.04573 -20.17235 -19.60922 -16.78491 -15.89825 -15.44926 -15.07571 -14.81201 -14.42639 -13.96497 -13.44875 -13.18345 -12.77639 -12.46939 -12.38008 -12.22294 -11.80244 -11.50661 -11.27785 -11.06530 -11.00673 -10.78657 -10.60748 -10.49396 -10.19574 -9.89992 -9.71129 -9.22933 -8.58510 -8.39337 -7.44673 -6.04429 -4.01898 3.28635 3.36197 3.39163 3.97532 4.43042 4.47328 4.64520 4.88167 4.92503 5.11808 5.20636 5.28439 5.29067 5.39903 5.48876 5.55280 5.61279 5.73016 5.76684 5.80047 5.93561 5.98531 6.08030 6.08310 6.18688 6.33574 6.52539 6.70912 6.85409 6.96712 7.04203 7.25462 7.65206 7.94810 8.39058 8.67951 9.04274 9.57913 11.09021 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.055647 B = 0.005731 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.052003 B = 4884.789630 C = 5115.253871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.267 1.267 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.165 3.835 10 N -0.675 5.675 11 C 0.086 3.914 12 H 0.026 0.974 13 C -0.102 4.102 14 C 0.056 3.944 15 N -0.522 5.522 16 C 0.040 3.960 17 C -0.121 4.121 18 C -0.116 4.116 19 C 0.064 3.936 20 H 0.047 0.953 21 C -0.105 4.105 22 H 0.263 0.737 23 H 0.026 0.974 24 H -0.023 1.023 25 H 0.336 0.664 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.075 -8.003 0.674 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.192 1.192 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.306 5.306 11 C -0.025 4.025 12 H 0.044 0.956 13 C -0.140 4.140 14 C -0.072 4.072 15 N -0.247 5.247 16 C -0.088 4.088 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.044 4.044 20 H 0.065 0.935 21 C -0.143 4.143 22 H 0.073 0.927 23 H 0.044 0.956 24 H -0.005 1.005 25 H 0.153 0.847 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 18.556 -8.267 -0.353 20.317 hybrid contribution 1.052 1.991 1.305 2.602 sum 19.607 -6.276 0.952 20.609 Atomic orbital electron populations 1.69905 1.06144 1.26824 1.51124 1.24906 0.94738 0.98904 0.94790 0.86827 0.80343 0.83942 0.78403 1.20403 1.19222 1.21134 1.21086 0.89009 0.94797 1.50393 0.90269 1.20043 0.96555 0.85184 0.94550 1.60490 1.04073 1.16565 1.49459 1.21537 0.90362 0.95253 0.95314 0.95573 1.21570 0.92442 1.02413 0.97606 1.22062 0.97338 0.88467 0.99361 1.63918 1.17213 1.29027 1.14556 1.22829 0.89276 0.96879 0.99781 1.22523 0.97936 0.98754 0.96678 1.22150 0.97357 0.97613 0.98300 1.22409 0.96412 0.96930 0.88660 0.93506 1.21682 0.93279 0.98981 1.00357 0.92681 0.95615 1.00543 0.84655 0.90344 0.91763 0.95332 0.90860 0.90429 0.94594 0.91042 0.91715 0.91546 0.90648 0.91892 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.51 -14.98 9.87 -34.44 -0.34 -15.32 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.16 4.09 4.30 -4.97 -0.02 4.07 16 10 N -0.68 -14.29 6.29 -107.72 -0.68 -14.97 16 11 C 0.09 1.50 2.55 -67.46 -0.17 1.32 16 12 H 0.03 0.48 7.79 -51.93 -0.40 0.07 16 13 C -0.10 -1.67 5.49 -26.50 -0.15 -1.82 16 14 C 0.06 0.77 5.87 -4.16 -0.02 0.74 16 15 N -0.52 -6.78 4.84 -224.49 -1.09 -7.86 16 16 C 0.04 0.42 6.71 -2.55 -0.02 0.41 16 17 C -0.12 -1.10 7.05 -24.52 -0.17 -1.28 16 18 C -0.12 -1.19 6.65 -25.55 -0.17 -1.36 16 19 C 0.06 0.81 2.50 -66.95 -0.17 0.65 16 20 H 0.05 0.61 7.97 -51.93 -0.41 0.20 16 21 C -0.10 -1.51 4.89 -26.77 -0.13 -1.64 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.03 0.66 6.50 -51.93 -0.34 0.32 16 24 H -0.02 -0.57 7.48 -51.93 -0.39 -0.96 16 25 H 0.34 6.86 8.34 -39.29 -0.33 6.53 16 26 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.06 1.12 7.50 -51.93 -0.39 0.73 16 28 H 0.03 0.38 7.98 -51.93 -0.41 -0.03 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.77 8.00 -51.93 -0.42 0.36 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 285.87 15.07 4.31 4.31 Total: -1.00 -30.68 285.87 -9.30 -39.98 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.49 Total: 0.85 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -1.46 Total: -12.31 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.99 Total: -50.08 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.68 -9.30 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155824698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.259 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds