Wall clock time and date at job start Sun Mar 29 2020 21:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00439 * 2 1 4 4 H 1.48493 * 109.47098 * 240.00560 * 3 2 1 5 5 H 1.48506 * 109.46620 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47119 * 119.99726 * 3 2 1 7 7 C 1.38817 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00159 * 163.21746 * 7 2 1 9 9 N 1.36941 * 119.99796 * 343.22198 * 7 2 1 10 10 C 1.45802 * 120.08794 * 153.01521 * 9 7 2 11 11 C 1.53032 * 108.65859 * 124.90923 * 10 9 7 12 12 C 1.53260 * 109.77189 * 55.38498 * 11 10 9 13 13 H 1.08996 * 110.07192 * 61.19799 * 12 11 10 14 14 N 1.46297 * 108.92765 * 180.67873 * 12 11 10 15 15 C 1.33324 * 123.16500 * 96.00119 * 14 12 11 16 16 O 1.21273 * 117.91516 * 184.28510 * 15 14 12 17 17 C 1.50093 * 124.16942 * 4.31136 * 15 14 12 18 18 C 1.53196 * 110.14796 * 344.14450 * 17 15 14 19 19 C 1.52767 * 109.86408 * 300.38468 * 12 11 10 20 20 H 1.09004 * 108.88763 * 177.60383 * 19 12 11 21 21 C 1.46867 * 120.89200 * 332.11093 * 9 7 2 22 22 H 0.97000 * 119.99623 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.93506 * 4.92592 * 10 9 7 24 24 H 1.09003 * 109.32624 * 244.53562 * 10 9 7 25 25 H 1.09005 * 109.42033 * 295.29372 * 11 10 9 26 26 H 1.08999 * 109.37571 * 175.44577 * 11 10 9 27 27 H 0.96995 * 118.55952 * 276.72757 * 14 12 11 28 28 H 1.08997 * 109.35291 * 223.93666 * 17 15 14 29 29 H 1.08998 * 109.35742 * 104.34953 * 17 15 14 30 30 H 1.09001 * 109.73017 * 286.98602 * 18 17 15 31 31 H 1.09007 * 109.72974 * 166.30435 * 18 17 15 32 32 H 1.09006 * 109.46438 * 112.96440 * 21 9 7 33 33 H 1.09003 * 109.46733 * 352.98386 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0557 -1.2221 -0.2706 9 7 1.3692 -2.3630 0.3413 10 6 1.8367 -3.6391 -0.1869 11 6 2.1128 -4.5827 0.9858 12 6 0.8589 -4.7059 1.8584 13 1 0.0373 -5.1226 1.2759 14 7 1.1479 -5.5981 2.9812 15 6 1.5182 -5.1596 4.1846 16 8 1.8109 -5.9844 5.0241 17 6 1.5953 -3.7102 4.5667 18 6 1.5804 -2.8321 3.3115 19 6 0.4624 -3.3314 2.3945 20 1 -0.4537 -3.4306 2.9768 21 6 0.2194 -2.3486 1.2550 22 1 -0.4849 0.8401 0.0004 23 1 2.7513 -3.4910 -0.7610 24 1 1.0669 -4.0677 -0.8286 25 1 2.9333 -4.1867 1.5843 26 1 2.3855 -5.5659 0.6024 27 1 1.0772 -6.5555 2.8429 28 1 2.5162 -3.5314 5.1218 29 1 0.7418 -3.4563 5.1953 30 1 2.5389 -2.9078 2.7980 31 1 1.3924 -1.7951 3.5900 32 1 -0.6801 -2.6378 0.7115 33 1 0.0912 -1.3454 1.6617 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160280413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:29 Heat of formation + Delta-G solvation = -24.938209 kcal Electronic energy + Delta-G solvation = -16304.769666 eV Core-core repulsion = 13751.316103 eV Total energy + Delta-G solvation = -2553.453563 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30379 -37.75306 -34.77869 -32.95310 -32.05934 -29.49563 -29.36985 -25.13485 -23.74610 -22.38503 -22.02988 -20.29727 -17.82947 -16.79963 -16.50249 -15.76778 -15.42983 -14.64230 -14.18512 -13.80293 -13.59838 -13.32231 -12.99247 -12.79587 -12.35627 -11.71922 -11.56024 -11.11117 -10.94044 -10.77580 -10.65994 -10.31011 -10.26335 -10.06575 -9.79645 -9.65846 -9.38406 -8.73048 -8.51566 -6.76196 -5.86683 -3.28513 2.91609 3.34318 3.40824 3.41902 3.60515 4.44396 4.89699 5.07571 5.14799 5.26183 5.34547 5.48129 5.56058 5.69480 5.77392 5.95058 6.17135 6.19086 6.25761 6.29186 6.52441 6.55696 6.68227 6.80266 6.90161 7.06718 7.19092 7.52398 7.63329 7.73283 8.37976 8.49057 9.14354 9.78090 10.31891 11.22590 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041783 B = 0.008710 C = 0.008076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.968603 B = 3213.834530 C = 3466.103969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.150 3.850 11 C -0.149 4.149 12 C 0.148 3.852 13 H 0.080 0.920 14 N -0.715 5.715 15 C 0.522 3.478 16 O -0.580 6.580 17 C -0.136 4.136 18 C -0.109 4.109 19 C -0.119 4.119 20 H 0.063 0.937 21 C 0.180 3.820 22 H 0.255 0.745 23 H 0.058 0.942 24 H 0.019 0.981 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.392 0.608 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.023 0.977 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.796 -6.217 3.545 7.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.310 5.310 10 C 0.022 3.978 11 C -0.189 4.189 12 C 0.044 3.956 13 H 0.098 0.902 14 N -0.365 5.365 15 C 0.310 3.690 16 O -0.462 6.462 17 C -0.176 4.176 18 C -0.146 4.146 19 C -0.140 4.140 20 H 0.081 0.919 21 C 0.054 3.946 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.036 0.964 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.227 0.773 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.828 -6.229 3.986 7.441 hybrid contribution 0.335 0.487 -0.136 0.606 sum 1.163 -5.742 3.849 7.010 Atomic orbital electron populations 1.70000 1.05231 1.25727 1.53724 1.25007 0.95254 0.98357 1.00722 0.86401 0.78969 0.83410 0.78189 1.20892 1.21634 1.20982 1.19133 0.92575 0.84782 1.41974 0.91655 1.43705 1.34992 1.01549 1.50733 1.20633 0.97820 0.86886 0.92426 1.22584 0.97426 0.99746 0.99143 1.21142 0.97553 0.90628 0.86274 0.90201 1.45925 1.68811 1.10407 1.11348 1.20277 0.75211 0.91943 0.81603 1.90691 1.50678 1.55916 1.48865 1.21705 1.04433 0.91133 1.00298 1.21619 1.00573 0.98956 0.93471 1.21933 0.97629 0.94933 0.99519 0.91913 1.20608 0.88806 0.97832 0.87378 0.93498 0.92338 0.96358 0.91613 0.92872 0.77330 0.88910 0.88826 0.90382 0.90727 0.95932 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.75 11.19 55.49 0.62 -24.13 16 2 C 0.01 0.14 4.93 -17.43 -0.09 0.05 16 3 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.26 -6.53 9.54 -15.06 -0.14 -6.67 16 8 H 0.07 1.65 7.87 -52.49 -0.41 1.24 16 9 N -0.59 -13.38 2.83 -173.82 -0.49 -13.88 16 10 C 0.15 2.86 6.45 -4.40 -0.03 2.83 16 11 C -0.15 -2.38 5.37 -26.58 -0.14 -2.52 16 12 C 0.15 2.27 3.23 -68.03 -0.22 2.05 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 14 N -0.72 -10.53 5.06 -54.50 -0.28 -10.80 16 15 C 0.52 8.65 7.68 -11.92 -0.09 8.56 16 16 O -0.58 -11.44 17.77 5.56 0.10 -11.34 16 17 C -0.14 -2.01 5.99 -28.08 -0.17 -2.18 16 18 C -0.11 -1.79 5.20 -26.64 -0.14 -1.92 16 19 C -0.12 -2.03 2.30 -91.04 -0.21 -2.24 16 20 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 21 C 0.18 3.86 4.73 -4.13 -0.02 3.84 16 22 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 23 H 0.06 1.11 7.90 -51.93 -0.41 0.70 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 1.13 6.33 -51.93 -0.33 0.80 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.39 5.17 8.81 -40.82 -0.36 4.81 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.40 6.09 -51.93 -0.32 1.08 16 31 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 2.29 6.03 -51.93 -0.31 1.98 16 LS Contribution 259.53 15.07 3.91 3.91 Total: -1.00 -28.90 259.53 -7.07 -35.97 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.65 Total: 2.75 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.25 Total: 1.81 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.15 Total: -48.81 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.10 Total: -11.34 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.90 -7.07 -35.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160280413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.027 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds