Wall clock time and date at job start Sun Mar 29 2020 21:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 H 1.09006 * 109.47367 * 184.45413 * 3 2 1 5 5 C 1.50699 * 109.47342 * 304.45717 * 3 2 1 6 6 H 1.08005 * 119.99608 * 115.14969 * 5 3 2 7 7 C 1.37876 * 120.00091 * 295.15089 * 5 3 2 8 8 N 1.31509 * 119.99886 * 352.96681 * 7 5 3 9 9 Si 1.86808 * 119.99969 * 172.97341 * 7 5 3 10 10 H 1.48497 * 109.47009 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47015 * 299.99946 * 9 7 5 12 12 H 1.48503 * 109.46963 * 60.00077 * 9 7 5 13 13 N 1.46905 * 109.47189 * 64.46023 * 3 2 1 14 14 C 1.46895 * 110.99963 * 85.29723 * 13 3 2 15 15 C 1.53004 * 109.46851 * 184.98622 * 14 13 3 16 16 N 1.46505 * 109.46720 * 180.02562 * 15 14 13 17 17 C 1.35310 * 125.86682 * 125.00356 * 16 15 14 18 18 C 1.35344 * 106.17332 * 179.97438 * 17 16 15 19 19 N 1.33770 * 106.50232 * 359.97438 * 18 17 16 20 20 N 1.28643 * 108.88082 * 359.73551 * 19 18 17 21 21 H 1.09001 * 109.47015 * 65.53736 * 1 2 3 22 22 H 1.08998 * 109.47541 * 185.53546 * 1 2 3 23 23 H 1.09005 * 109.46821 * 305.53793 * 1 2 3 24 24 H 1.09004 * 109.46905 * 240.00483 * 2 1 3 25 25 H 1.08998 * 109.47090 * 120.00472 * 2 1 3 26 26 H 0.96998 * 120.00531 * 356.31746 * 8 7 5 27 27 H 1.00895 * 111.00045 * 209.25829 * 13 3 2 28 28 H 1.09004 * 109.47313 * 304.98302 * 14 13 3 29 29 H 1.09000 * 109.47146 * 64.98274 * 14 13 3 30 30 H 1.08997 * 109.47150 * 299.99607 * 15 14 13 31 31 H 1.09000 * 109.47530 * 59.99886 * 15 14 13 32 32 H 1.08002 * 126.91566 * 359.97133 * 17 16 15 33 33 H 1.08012 * 126.75074 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0798 5 6 1.4496 2.1841 -1.1715 6 1 0.7754 3.0109 -1.0029 7 6 1.7700 1.8071 -2.4584 8 7 2.6940 0.8945 -2.6655 9 14 0.8917 2.5928 -3.9079 10 1 1.4151 2.0194 -5.1738 11 1 -0.5655 2.3250 -3.8079 12 1 1.1277 4.0588 -3.8942 13 7 1.6403 2.1032 1.2497 14 6 2.6091 1.8343 2.3206 15 6 2.0978 2.4323 3.6328 16 7 3.0644 2.1647 4.7007 17 6 3.6385 3.0923 5.5012 18 6 4.4576 2.4134 6.3379 19 7 4.3456 1.1206 6.0130 20 7 3.5081 1.0060 5.0433 21 1 -0.3633 0.4256 -0.9354 22 1 -0.3634 -1.0228 0.0991 23 1 -0.3633 0.5974 0.8363 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.1876 0.5254 -1.9166 27 1 1.5199 3.0954 1.1116 28 1 2.7336 0.7576 2.4361 29 1 3.5679 2.2855 2.0649 30 1 1.9734 3.5090 3.5174 31 1 1.1391 1.9812 3.8886 32 1 3.4759 4.1598 5.4774 33 1 5.0794 2.8329 7.1150 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163839003.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:20 Heat of formation + Delta-G solvation = 90.077962 kcal Electronic energy + Delta-G solvation = -15209.515448 eV Core-core repulsion = 12693.342112 eV Total energy + Delta-G solvation = -2516.173336 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.19928 -37.07846 -35.01926 -32.69500 -31.03478 -30.88829 -28.56942 -25.53234 -23.59284 -23.17710 -22.52746 -21.09543 -19.41154 -17.65070 -17.01838 -16.27719 -15.20498 -14.86147 -14.56903 -13.92513 -13.85997 -13.62287 -13.17228 -12.63921 -12.04472 -11.81805 -11.66670 -11.32845 -11.15668 -10.87926 -10.82305 -10.25033 -10.16917 -10.12507 -9.92734 -9.75242 -9.40449 -8.60944 -8.41937 -7.65313 -6.43170 -4.15456 1.62442 2.36666 2.58768 3.38045 3.40768 3.58894 4.37841 4.43641 4.55427 4.82874 4.98918 5.18246 5.20526 5.27496 5.33502 5.59695 5.91407 6.04160 6.15845 6.26149 6.39757 6.53712 6.58552 6.88373 6.98090 7.18964 7.36898 7.48469 7.71467 7.90709 8.33677 8.43811 8.53560 8.76502 9.55105 10.93516 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.050725 B = 0.005457 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.866142 B = 5129.626589 C = 5268.883966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.107 4.107 3 C 0.207 3.793 4 H -0.006 1.006 5 C -0.598 4.598 6 H 0.054 0.946 7 C 0.025 3.975 8 N -0.907 5.907 9 Si 1.065 2.935 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.289 1.289 13 N -0.675 5.675 14 C 0.049 3.951 15 C 0.116 3.884 16 N -0.282 5.282 17 C -0.054 4.054 18 C -0.058 4.058 19 N -0.280 5.280 20 N -0.079 5.079 21 H 0.057 0.943 22 H 0.017 0.983 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.022 0.978 26 H 0.271 0.729 27 H 0.335 0.665 28 H 0.083 0.917 29 H 0.027 0.973 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.188 0.812 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.782 6.212 12.273 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.146 4.146 3 C 0.099 3.901 4 H 0.011 0.989 5 C -0.636 4.636 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.542 5.542 9 Si 0.893 3.107 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.216 1.216 13 N -0.307 5.307 14 C -0.082 4.082 15 C -0.005 4.005 16 N -0.076 5.076 17 C -0.205 4.205 18 C -0.216 4.216 19 N -0.146 5.146 20 N -0.060 5.060 21 H 0.076 0.924 22 H 0.037 0.963 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.153 0.847 28 H 0.101 0.899 29 H 0.045 0.955 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.205 0.795 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.389 4.140 10.485 11.358 hybrid contribution 0.880 1.929 1.587 2.648 sum -0.510 6.069 12.072 13.521 Atomic orbital electron populations 1.21419 0.96357 0.97657 1.02133 1.21500 0.96485 0.98013 0.98607 1.19250 0.93314 0.91861 0.85662 0.98866 1.21894 1.31407 1.18583 0.91737 0.92738 1.25715 0.96304 0.95851 1.00124 1.70791 1.21014 1.26758 1.35668 0.83596 0.75775 0.75448 0.75838 1.20812 1.21287 1.21573 1.60529 1.45883 1.16231 1.08014 1.22121 0.94287 1.01857 0.89955 1.22241 0.90470 1.02911 0.84894 1.47615 1.30162 1.05292 1.24529 1.23711 1.01635 0.98284 0.96902 1.23596 1.03786 0.90485 1.03718 1.75125 1.12672 1.18378 1.08397 1.78351 1.10174 1.06143 1.11289 0.92408 0.96343 0.93117 0.92215 0.95971 0.91791 0.84723 0.89886 0.95523 0.87910 0.87409 0.79453 0.79577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.43 37.16 0.35 -2.20 16 2 C -0.11 -2.49 5.51 -26.73 -0.15 -2.64 16 3 C 0.21 4.89 1.93 -68.86 -0.13 4.76 16 4 H -0.01 -0.16 7.22 -51.93 -0.37 -0.54 16 5 C -0.60 -15.50 7.13 -34.44 -0.25 -15.74 16 6 H 0.05 1.40 7.67 -52.48 -0.40 1.00 16 7 C 0.03 0.68 5.26 -17.82 -0.09 0.59 16 8 N -0.91 -26.24 12.94 55.43 0.72 -25.53 16 9 Si 1.07 24.10 29.91 -169.99 -5.08 19.01 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.68 -12.83 5.62 -107.95 -0.61 -13.43 16 14 C 0.05 0.80 5.59 -3.82 -0.02 0.78 16 15 C 0.12 1.44 6.76 -4.04 -0.03 1.41 16 16 N -0.28 -3.82 3.44 -61.26 -0.21 -4.03 16 17 C -0.05 -0.58 11.57 -17.05 -0.20 -0.77 16 18 C -0.06 -0.68 12.05 -17.74 -0.21 -0.90 16 19 N -0.28 -4.48 12.41 30.24 0.38 -4.10 16 20 N -0.08 -1.32 12.92 60.35 0.78 -0.54 16 21 H 0.06 1.34 7.31 -51.93 -0.38 0.96 16 22 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 1.04 7.59 -51.93 -0.39 0.65 16 24 H 0.06 1.52 6.35 -51.93 -0.33 1.19 16 25 H 0.02 0.48 7.33 -51.93 -0.38 0.10 16 26 H 0.27 7.87 6.03 -40.82 -0.25 7.63 16 27 H 0.34 6.07 8.30 -39.29 -0.33 5.74 16 28 H 0.08 1.53 7.28 -51.93 -0.38 1.16 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.97 8.07 -51.93 -0.42 0.55 16 31 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.19 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.19 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 277.47 15.07 4.18 4.18 Total: -1.00 -30.72 277.47 -5.12 -35.84 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.54 Total: 3.31 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -0.73 Total: -14.71 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 1.06 Total: -47.63 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.08 Total: 19.01 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.72 -5.12 -35.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163839003.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.918 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds