Wall clock time and date at job start Sun Mar 29 2020 21:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.34478 * 126.16760 * 2 1 4 4 C 1.30250 * 108.70434 * 179.82638 * 3 2 1 5 5 C 1.50698 * 125.62121 * 180.18915 * 4 3 2 6 6 N 1.46903 * 109.47164 * 90.29334 * 5 4 3 7 7 C 1.46898 * 111.00013 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47187 * 34.99693 * 7 6 5 9 9 C 1.52998 * 109.47009 * 274.99716 * 7 6 5 10 10 C 1.50707 * 109.47204 * 154.99803 * 7 6 5 11 11 H 1.07998 * 119.99946 * 5.45979 * 10 7 6 12 12 C 1.37869 * 120.00150 * 185.46201 * 10 7 6 13 13 N 1.31521 * 120.00026 * 9.54223 * 12 10 7 14 14 Si 1.86801 * 120.00140 * 189.54376 * 12 10 7 15 15 H 1.48503 * 109.46798 * 84.99513 * 14 12 10 16 16 H 1.48494 * 109.47409 * 204.99058 * 14 12 10 17 17 H 1.48494 * 109.47086 * 324.99650 * 14 12 10 18 18 O 1.33964 * 108.75805 * 0.43883 * 4 3 2 19 19 C 1.34327 * 126.16785 * 180.31224 * 2 1 3 20 20 C 1.50704 * 126.44379 * 0.02562 * 19 2 1 21 21 H 1.09002 * 109.47026 * 269.69066 * 1 2 3 22 22 H 1.09002 * 109.47236 * 29.68717 * 1 2 3 23 23 H 1.08998 * 109.47397 * 149.69188 * 1 2 3 24 24 H 1.09000 * 109.47179 * 210.28985 * 5 4 3 25 25 H 1.09005 * 109.47472 * 330.29036 * 5 4 3 26 26 H 1.00904 * 110.99773 * 303.94933 * 6 5 4 27 27 H 1.08993 * 109.46914 * 63.76160 * 9 7 6 28 28 H 1.09008 * 109.46788 * 183.75671 * 9 7 6 29 29 H 1.08992 * 109.47382 * 303.75658 * 9 7 6 30 30 H 0.96996 * 120.00003 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.47398 * 89.99662 * 20 19 2 32 32 H 1.09006 * 109.47158 * 210.00394 * 20 19 2 33 33 H 1.09006 * 109.46963 * 329.99673 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5430 0.6948 0.0037 5 6 4.7479 1.5999 0.0091 6 7 5.1389 1.8865 1.3958 7 6 6.3126 2.7688 1.4403 8 1 6.2668 3.4763 0.6123 9 6 7.5863 1.9293 1.3239 10 6 6.3252 3.5227 2.7452 11 1 5.5912 3.2991 3.5051 12 6 7.2738 4.4978 2.9687 13 7 8.0458 4.9024 1.9838 14 14 7.4628 5.2444 4.6706 15 1 8.3564 4.3874 5.4906 16 1 8.0511 6.6027 4.5528 17 1 6.1312 5.3363 5.3214 18 8 3.5733 -0.6445 -0.0035 19 6 2.2997 -1.0844 -0.0059 20 6 1.8493 -2.5225 -0.0143 21 1 -0.3633 -0.0055 1.0277 22 1 -0.3634 0.8928 -0.5090 23 1 -0.3634 -0.8872 -0.5186 24 1 5.5731 1.1094 -0.5070 25 1 4.5041 2.5325 -0.4998 26 1 4.3691 2.2829 1.9140 27 1 7.6091 1.4364 0.3521 28 1 8.4581 2.5760 1.4238 29 1 7.5994 1.1775 2.1130 30 1 8.7134 5.5882 2.1412 31 1 1.7410 -2.8634 -1.0439 32 1 2.5899 -3.1382 0.4964 33 1 0.8912 -2.6062 0.4988 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219416082.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:38 Heat of formation + Delta-G solvation = 9.281808 kcal Electronic energy + Delta-G solvation = -15034.281605 eV Core-core repulsion = 12482.311934 eV Total energy + Delta-G solvation = -2551.969671 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.07319 -36.14168 -34.94647 -33.34020 -32.18912 -29.56325 -28.97940 -26.41406 -25.14241 -23.70058 -21.36306 -20.38382 -19.90063 -16.89365 -16.56236 -16.00152 -14.95884 -14.42131 -14.32360 -13.69759 -13.68094 -13.24814 -13.18362 -13.03520 -12.44941 -12.32703 -12.14116 -11.82839 -11.37984 -10.91073 -10.78920 -10.68790 -10.45490 -10.27976 -10.23366 -10.03535 -8.95734 -8.47588 -8.32492 -7.44975 -6.08660 -4.10959 1.64725 2.84729 2.93516 3.30988 3.36946 3.40229 4.22745 4.41203 4.80836 4.92103 5.14153 5.25692 5.29754 5.33697 5.50364 5.56313 5.60052 5.74058 5.85356 5.98394 6.20571 6.28529 6.55258 6.75979 7.03761 7.07481 7.29666 7.75081 7.77181 8.02051 8.10144 8.22450 8.55188 8.97358 9.53967 11.00634 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046484 B = 0.005422 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.219254 B = 5163.022748 C = 5393.074903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.018 4.018 3 N -0.486 5.486 4 C 0.219 3.781 5 C 0.151 3.849 6 N -0.684 5.684 7 C 0.211 3.789 8 H 0.015 0.985 9 C -0.121 4.121 10 C -0.522 4.522 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.888 5.888 14 Si 0.896 3.104 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.274 1.274 18 O -0.194 6.194 19 C -0.067 4.067 20 C -0.062 4.062 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.340 0.660 27 H 0.010 0.990 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.262 0.738 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.064 -11.263 -4.938 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.138 4.138 3 N -0.216 5.216 4 C 0.012 3.988 5 C 0.020 3.980 6 N -0.317 5.317 7 C 0.104 3.896 8 H 0.032 0.968 9 C -0.179 4.179 10 C -0.561 4.561 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.526 5.526 14 Si 0.723 3.277 15 H -0.205 1.205 16 H -0.213 1.213 17 H -0.199 1.199 18 O -0.080 6.080 19 C -0.120 4.120 20 C -0.119 4.119 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.111 0.889 25 H 0.086 0.914 26 H 0.158 0.842 27 H 0.029 0.971 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.674 -11.095 -4.928 16.165 hybrid contribution 0.062 0.602 0.667 0.901 sum -10.612 -10.493 -4.261 15.520 Atomic orbital electron populations 1.20059 0.86934 1.02895 1.02586 1.21486 0.97736 0.87989 1.06630 1.70374 1.00685 1.31191 1.19342 1.26522 0.95329 0.78833 0.98142 1.20370 0.88846 0.93769 0.94978 1.60822 1.10284 1.52754 1.07867 1.19176 0.85049 0.88148 0.97232 0.96782 1.21678 1.00492 0.98898 0.96873 1.21163 1.15386 1.18681 1.00847 0.92065 1.24903 0.95891 0.95934 0.96974 1.69967 1.22150 1.29791 1.30691 0.86551 0.78451 0.78141 0.84508 1.20468 1.21324 1.19927 1.84414 1.29622 1.24444 1.69541 1.23092 0.81354 0.98031 1.09539 1.20183 1.01703 0.86822 1.03220 0.90949 0.90767 0.91117 0.88939 0.91388 0.84176 0.97108 0.91565 0.94493 0.92802 0.90295 0.90454 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.05 36.00 0.36 -0.36 16 2 C -0.02 -0.28 7.11 -82.82 -0.59 -0.87 16 3 N -0.49 -8.98 11.29 -7.36 -0.08 -9.06 16 4 C 0.22 4.07 7.85 -12.95 -0.10 3.97 16 5 C 0.15 2.86 6.11 -4.98 -0.03 2.83 16 6 N -0.68 -15.08 6.29 -109.21 -0.69 -15.76 16 7 C 0.21 5.31 2.47 -68.86 -0.17 5.14 16 8 H 0.01 0.39 7.74 -51.93 -0.40 -0.01 16 9 C -0.12 -2.92 9.27 37.16 0.34 -2.58 16 10 C -0.52 -14.36 8.48 -34.44 -0.29 -14.66 16 11 H 0.06 1.68 7.69 -52.49 -0.40 1.28 16 12 C 0.07 1.81 5.17 -17.82 -0.09 1.72 16 13 N -0.89 -25.33 12.16 55.43 0.67 -24.66 16 14 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 O -0.19 -3.42 10.77 5.38 0.06 -3.36 16 19 C -0.07 -0.97 7.39 -35.69 -0.26 -1.23 16 20 C -0.06 -0.57 10.04 36.01 0.36 -0.21 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 0.56 7.79 -51.93 -0.40 0.15 16 24 H 0.09 1.66 7.51 -51.93 -0.39 1.27 16 25 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 26 H 0.34 7.64 8.25 -39.29 -0.32 7.31 16 27 H 0.01 0.22 7.55 -51.93 -0.39 -0.17 16 28 H 0.07 1.73 6.83 -51.92 -0.35 1.37 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.61 7.79 -51.93 -0.40 0.21 16 LS Contribution 283.54 15.07 4.27 4.27 Total: -1.00 -30.58 283.54 -6.00 -36.58 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.74 Total: 1.95 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.47 Total: -6.26 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.10 Total: -49.48 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: 0.06 Total: -3.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.58 -6.00 -36.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219416082.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.860 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds