Wall clock time and date at job start Sun Mar 29 2020 21:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34330 * 126.44636 * 2 1 4 4 N 1.34472 * 107.67047 * 180.02562 * 3 2 1 5 5 C 1.30261 * 108.69910 * 0.02562 * 4 3 2 6 6 C 1.50707 * 125.61735 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47116 * 195.02596 * 6 5 4 8 8 C 1.53000 * 109.47149 * 75.02377 * 6 5 4 9 9 N 1.46902 * 109.46822 * 315.02423 * 6 5 4 10 10 C 1.46901 * 110.99621 * 205.00124 * 9 6 5 11 11 H 1.09002 * 109.47247 * 325.00195 * 10 9 6 12 12 C 1.53001 * 109.47389 * 84.99770 * 10 9 6 13 13 C 1.50698 * 109.46976 * 205.00005 * 10 9 6 14 14 H 1.07999 * 120.00350 * 356.68660 * 13 10 9 15 15 C 1.37879 * 119.99934 * 176.68479 * 13 10 9 16 16 N 1.31514 * 120.00133 * 352.65902 * 15 13 10 17 17 Si 1.86800 * 119.99819 * 172.66193 * 15 13 10 18 18 H 1.48496 * 109.47194 * 265.06720 * 17 15 13 19 19 H 1.48496 * 109.47598 * 25.07273 * 17 15 13 20 20 H 1.48510 * 109.47214 * 145.07255 * 17 15 13 21 21 O 1.33961 * 108.76274 * 0.22447 * 5 4 3 22 22 H 1.09000 * 109.47801 * 89.96695 * 1 2 3 23 23 H 1.09000 * 109.47222 * 209.97328 * 1 2 3 24 24 H 1.09007 * 109.46933 * 329.96646 * 1 2 3 25 25 H 1.07999 * 126.16015 * 0.06369 * 3 2 1 26 26 H 1.09002 * 109.46973 * 60.00017 * 8 6 5 27 27 H 1.08997 * 109.47032 * 180.02562 * 8 6 5 28 28 H 1.08998 * 109.47291 * 300.00112 * 8 6 5 29 29 H 1.00896 * 111.00296 * 328.95473 * 9 6 5 30 30 H 1.08998 * 109.47234 * 297.85856 * 12 10 9 31 31 H 1.09000 * 109.46715 * 57.85703 * 12 10 9 32 32 H 1.08996 * 109.47192 * 177.85061 * 12 10 9 33 33 H 0.97001 * 120.00077 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5764 -0.6549 -0.0015 6 6 4.8004 -1.5342 -0.0029 7 1 4.5162 -2.5520 -0.2698 8 6 5.4330 -1.5300 1.3902 9 7 5.7690 -1.0234 -0.9821 10 6 6.6577 -2.0948 -1.4515 11 1 6.8555 -2.7874 -0.6333 12 6 5.9874 -2.8454 -2.6040 13 6 7.9562 -1.4973 -1.9289 14 1 8.0863 -0.4252 -1.9379 15 6 8.9782 -2.3194 -2.3541 16 7 8.8774 -3.6226 -2.2091 17 14 10.5060 -1.5819 -3.1361 18 1 10.3589 -1.5903 -4.6137 19 1 10.6787 -0.1847 -2.6637 20 1 11.6951 -2.3847 -2.7525 21 8 2.3074 -1.0840 -0.0065 22 1 -0.3635 0.0006 -1.0276 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3633 0.8897 0.5144 25 1 1.9822 2.1112 0.0010 26 1 4.7142 -1.9089 2.1168 27 1 6.3184 -2.1656 1.3890 28 1 5.7172 -0.5121 1.6571 29 1 5.2999 -0.5777 -1.7562 30 1 5.0673 -3.3095 -2.2490 31 1 5.7551 -2.1456 -3.4068 32 1 6.6623 -3.6155 -2.9773 33 1 9.5963 -4.2009 -2.5086 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226554843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:52 Heat of formation + Delta-G solvation = -5.364151 kcal Electronic energy + Delta-G solvation = -15340.059156 eV Core-core repulsion = 12787.454388 eV Total energy + Delta-G solvation = -2552.604768 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.32895 -38.49658 -35.76476 -35.12082 -33.35493 -32.06367 -28.86194 -27.65196 -27.19416 -24.64557 -23.04337 -22.05837 -21.33401 -18.82150 -17.78503 -17.70829 -16.72488 -16.60730 -15.75030 -15.07510 -14.82786 -14.49479 -14.22343 -13.90503 -13.73248 -13.41150 -13.20825 -13.05479 -12.99631 -12.78948 -12.50567 -12.37459 -12.30193 -12.13307 -11.81010 -11.42482 -11.08557 -10.45349 -9.61086 -9.12302 -8.11246 -6.18221 0.42530 1.44245 1.45413 1.56113 1.61469 1.72341 2.46374 3.07600 3.19474 3.47142 3.88680 4.08597 4.11253 4.28031 4.46890 4.61872 4.67350 4.69390 4.76519 4.83338 4.88103 5.03619 5.08422 5.18969 5.26522 5.33018 5.40851 5.63390 5.76601 6.19785 6.56725 6.63265 6.84109 6.92926 7.49747 8.96950 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.052084 B = 0.005873 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.467425 B = 4766.093618 C = 4827.519723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.052 4.052 3 C -0.065 4.065 4 N -0.485 5.485 5 C 0.174 3.826 6 C 0.183 3.817 7 H 0.060 0.940 8 C -0.123 4.123 9 N -0.665 5.665 10 C 0.216 3.784 11 H 0.021 0.979 12 C -0.155 4.155 13 C -0.514 4.514 14 H 0.052 0.948 15 C 0.014 3.986 16 N -0.921 5.921 17 Si 0.957 3.043 18 H -0.277 1.277 19 H -0.272 1.272 20 H -0.283 1.283 21 O -0.216 6.216 22 H 0.097 0.903 23 H 0.084 0.916 24 H 0.118 0.882 25 H 0.210 0.790 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.331 0.669 30 H 0.028 0.972 31 H 0.034 0.966 32 H 0.054 0.946 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.985 5.120 4.429 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.204 4.204 4 N -0.215 5.215 5 C -0.033 4.033 6 C 0.072 3.928 7 H 0.078 0.922 8 C -0.181 4.181 9 N -0.297 5.297 10 C 0.108 3.892 11 H 0.039 0.961 12 C -0.215 4.215 13 C -0.552 4.552 14 H 0.071 0.929 15 C -0.185 4.185 16 N -0.561 5.561 17 Si 0.783 3.217 18 H -0.202 1.202 19 H -0.196 1.196 20 H -0.209 1.209 21 O -0.103 6.103 22 H 0.115 0.885 23 H 0.103 0.897 24 H 0.137 0.863 25 H 0.227 0.773 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.915 5.495 4.890 16.631 hybrid contribution -0.130 -0.755 -1.113 1.351 sum -15.045 4.740 3.777 16.220 Atomic orbital electron populations 1.20508 0.80409 1.05896 1.05080 1.24438 0.96806 0.83852 1.05437 1.23704 0.87077 1.01977 1.07596 1.70446 1.24329 1.09430 1.17255 1.26323 0.84130 0.90589 1.02256 1.19849 0.83249 0.92803 0.96861 0.92222 1.21697 1.00642 1.02815 0.92958 1.60867 1.19758 1.31223 1.17861 1.19079 0.90182 0.87850 0.92135 0.96120 1.22242 0.98213 1.00854 1.00158 1.21341 0.98712 0.93197 1.41969 0.92925 1.25642 1.01113 0.95200 0.96501 1.70046 1.34397 1.03813 1.47836 0.85553 0.79005 0.78428 0.78682 1.20238 1.19646 1.20888 1.84396 1.17915 1.37948 1.70051 0.88451 0.89707 0.86336 0.77291 0.90754 0.91901 0.92209 0.85153 0.95267 0.94726 0.92682 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.43 71.24 0.74 -0.04 16 2 C -0.05 -1.28 7.39 24.79 0.18 -1.10 16 3 C -0.07 -1.76 11.80 83.40 0.98 -0.77 16 4 N -0.49 -17.37 11.28 -303.83 -3.43 -20.79 16 5 C 0.17 6.22 6.84 88.34 0.60 6.82 16 6 C 0.18 7.00 2.97 44.17 0.13 7.13 16 7 H 0.06 2.27 7.13 -2.39 -0.02 2.25 16 8 C -0.12 -4.32 9.38 71.98 0.68 -3.65 16 9 N -0.66 -29.67 6.02 -477.14 -2.87 -32.54 16 10 C 0.22 10.95 2.27 44.17 0.10 11.05 16 11 H 0.02 1.15 7.11 -2.39 -0.02 1.13 16 12 C -0.16 -7.42 8.99 71.98 0.65 -6.77 16 13 C -0.51 -28.87 8.79 25.60 0.23 -28.64 16 14 H 0.05 3.02 7.82 -2.91 -0.02 3.00 16 15 C 0.01 0.78 5.21 84.66 0.44 1.22 16 16 N -0.92 -53.06 11.91 21.45 0.26 -52.81 16 17 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 O -0.22 -6.87 10.78 -3.70 -0.04 -6.91 16 22 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.21 3.99 8.06 -2.91 -0.02 3.96 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 2.36 7.43 -2.39 -0.02 2.34 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.33 14.69 8.07 -89.70 -0.72 13.96 16 30 H 0.03 1.23 7.45 -2.39 -0.02 1.21 16 31 H 0.03 1.58 8.10 -2.39 -0.02 1.56 16 32 H 0.05 2.90 6.59 -2.39 -0.02 2.88 16 33 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -65.20 281.69 1.06 -64.14 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.38 Total: 17.23 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 4.74 Total: -14.75 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -6.04 Total: -106.14 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.04 Total: -6.91 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -65.20 1.06 -64.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226554843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.774 kcal (2) G-P(sol) polarization free energy of solvation -65.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds