Wall clock time and date at job start Sun Mar 29 2020 21:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34323 * 126.44496 * 2 1 4 4 N 1.34475 * 107.67131 * 179.73707 * 3 2 1 5 5 C 1.30250 * 108.70168 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.62348 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47115 * 194.97711 * 6 5 4 8 8 C 1.53003 * 109.47194 * 74.97467 * 6 5 4 9 9 N 1.46904 * 109.47120 * 314.97273 * 6 5 4 10 10 C 1.46900 * 111.00193 * 234.90489 * 9 6 5 11 11 H 1.08995 * 109.47398 * 33.31716 * 10 9 6 12 12 C 1.53006 * 109.46654 * 273.31522 * 10 9 6 13 13 C 1.50698 * 109.47000 * 153.31798 * 10 9 6 14 14 H 1.08004 * 120.00364 * 0.98618 * 13 10 9 15 15 C 1.37876 * 119.99618 * 180.97985 * 13 10 9 16 16 N 1.31518 * 119.99930 * 198.37540 * 15 13 10 17 17 Si 1.86795 * 120.00241 * 18.38229 * 15 13 10 18 18 H 1.48498 * 109.47497 * 87.13924 * 17 15 13 19 19 H 1.48507 * 109.47185 * 207.14382 * 17 15 13 20 20 H 1.48500 * 109.46901 * 327.14095 * 17 15 13 21 21 O 1.33967 * 108.76252 * 359.97438 * 5 4 3 22 22 H 1.08997 * 109.46930 * 90.02205 * 1 2 3 23 23 H 1.08998 * 109.47015 * 210.02555 * 1 2 3 24 24 H 1.08998 * 109.46895 * 330.02757 * 1 2 3 25 25 H 1.08000 * 126.16800 * 359.73591 * 3 2 1 26 26 H 1.09003 * 109.46509 * 178.70930 * 8 6 5 27 27 H 1.08998 * 109.46864 * 298.70701 * 8 6 5 28 28 H 1.08991 * 109.47242 * 58.70878 * 8 6 5 29 29 H 1.00906 * 110.99480 * 358.85847 * 9 6 5 30 30 H 1.08998 * 109.46771 * 63.40487 * 12 10 9 31 31 H 1.08996 * 109.46535 * 183.40429 * 12 10 9 32 32 H 1.08997 * 109.47456 * 303.40485 * 12 10 9 33 33 H 0.97003 * 120.00069 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5781 0.6478 0.0059 5 6 3.5765 -0.6547 0.0100 6 6 4.8004 -1.5340 0.0176 7 1 4.5173 -2.5531 -0.2459 8 6 5.4272 -1.5235 1.4133 9 7 5.7731 -1.0278 -0.9599 10 6 6.1563 -2.0776 -1.9134 11 1 5.3053 -2.7349 -2.0915 12 6 7.3171 -2.8909 -1.3370 13 6 6.5829 -1.4446 -3.2128 14 1 6.5857 -0.3694 -3.3144 15 6 6.9696 -2.2382 -4.2718 16 7 7.6718 -1.7232 -5.2574 17 14 6.4961 -4.0448 -4.3070 18 1 5.1557 -4.1933 -4.9287 19 1 7.4965 -4.8035 -5.1002 20 1 6.4597 -4.5740 -2.9200 21 8 2.3075 -1.0840 0.0074 22 1 -0.3633 -0.0004 -1.0276 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 1.9822 2.1112 -0.0040 26 1 6.2992 -2.1775 1.4248 27 1 5.7312 -0.5081 1.6674 28 1 4.6979 -1.8775 2.1418 29 1 5.4140 -0.2165 -1.4404 30 1 6.9902 -3.3974 -0.4289 31 1 7.6412 -3.6305 -2.0691 32 1 8.1468 -2.2241 -1.1024 33 1 7.9436 -2.2814 -6.0027 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226554854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:54 Heat of formation + Delta-G solvation = -1.020375 kcal Electronic energy + Delta-G solvation = -15462.328120 eV Core-core repulsion = 12909.911713 eV Total energy + Delta-G solvation = -2552.416407 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.35294 -38.52565 -35.80017 -35.14592 -33.53247 -32.35758 -29.47031 -27.62894 -27.05856 -24.57768 -22.95431 -21.96897 -21.41526 -19.15968 -18.08830 -17.77742 -16.90004 -16.20278 -15.75294 -15.39679 -15.05887 -14.56232 -14.36747 -14.05434 -13.93758 -13.50572 -13.30297 -13.22599 -13.04515 -12.83666 -12.50109 -12.33025 -12.21676 -12.06749 -11.49688 -11.35010 -11.22481 -10.59198 -9.65726 -9.36506 -8.35484 -6.34370 0.40872 1.33523 1.36935 1.46685 1.61723 1.68436 2.32889 2.97080 3.00170 3.39641 3.84028 4.06011 4.08752 4.30216 4.44907 4.56541 4.61831 4.66739 4.76235 4.84484 4.94812 4.97652 5.04835 5.09254 5.16945 5.28668 5.40053 5.50825 5.72183 5.93530 6.36774 6.52619 6.72086 6.78651 7.29141 8.81523 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.032196 B = 0.007410 C = 0.006932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.463506 B = 3777.993581 C = 4038.048409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.054 4.054 3 C -0.065 4.065 4 N -0.496 5.496 5 C 0.161 3.839 6 C 0.176 3.824 7 H 0.084 0.916 8 C -0.120 4.120 9 N -0.660 5.660 10 C 0.188 3.812 11 H 0.000 1.000 12 C -0.130 4.130 13 C -0.541 4.541 14 H 0.030 0.970 15 C 0.023 3.977 16 N -0.935 5.935 17 Si 0.929 3.071 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.220 1.220 21 O -0.216 6.216 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.119 0.881 25 H 0.209 0.791 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.341 0.659 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 -1.271 13.224 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.203 4.203 4 N -0.226 5.226 5 C -0.047 4.047 6 C 0.064 3.936 7 H 0.102 0.898 8 C -0.178 4.178 9 N -0.293 5.293 10 C 0.078 3.922 11 H 0.018 0.982 12 C -0.188 4.188 13 C -0.579 4.579 14 H 0.049 0.951 15 C -0.176 4.176 16 N -0.574 5.574 17 Si 0.752 3.248 18 H -0.205 1.205 19 H -0.208 1.208 20 H -0.143 1.143 21 O -0.103 6.103 22 H 0.112 0.888 23 H 0.105 0.895 24 H 0.137 0.863 25 H 0.226 0.774 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.160 0.840 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.806 -1.092 13.475 18.621 hybrid contribution -1.204 -0.618 -1.365 1.923 sum -14.011 -1.710 12.109 18.597 Atomic orbital electron populations 1.20506 0.80459 1.06001 1.04967 1.24438 0.96886 0.83893 1.05453 1.23644 0.87095 1.01971 1.07628 1.70339 1.24637 1.09598 1.17981 1.27163 0.84780 0.91088 1.01645 1.20408 0.81849 0.94080 0.97234 0.89797 1.21741 1.01150 1.03149 0.91751 1.60885 1.40136 1.08695 1.19565 1.19546 0.93700 0.89796 0.89124 0.98236 1.22051 0.98959 0.98533 0.99276 1.21284 1.45912 0.93422 0.97305 0.95136 1.25774 0.93159 1.03599 0.95049 1.70147 1.35816 1.39387 1.12037 0.86206 0.78097 0.79903 0.80617 1.20496 1.20829 1.14307 1.84405 1.18012 1.37851 1.69992 0.88755 0.89481 0.86274 0.77418 0.90026 0.92436 0.90923 0.84002 0.92385 0.93855 0.93520 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.43 71.24 0.74 -0.12 16 2 C -0.05 -1.38 7.39 24.79 0.18 -1.20 16 3 C -0.07 -1.84 11.80 83.39 0.98 -0.86 16 4 N -0.50 -17.91 10.82 -303.84 -3.29 -21.20 16 5 C 0.16 5.70 6.89 88.34 0.61 6.31 16 6 C 0.18 6.13 3.25 44.17 0.14 6.27 16 7 H 0.08 2.82 7.15 -2.39 -0.02 2.80 16 8 C -0.12 -3.40 9.50 71.98 0.68 -2.72 16 9 N -0.66 -28.31 6.24 -477.14 -2.98 -31.29 16 10 C 0.19 8.86 2.07 44.17 0.09 8.95 16 11 H 0.00 0.01 6.27 -2.39 -0.01 -0.01 16 12 C -0.13 -5.52 8.74 71.98 0.63 -4.89 16 13 C -0.54 -31.47 9.04 25.60 0.23 -31.24 16 14 H 0.03 2.00 7.85 -2.91 -0.02 1.97 16 15 C 0.02 1.36 5.29 84.65 0.45 1.81 16 16 N -0.94 -58.56 13.96 21.45 0.30 -58.26 16 17 Si 0.93 43.04 25.84 68.60 1.77 44.81 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.22 -9.07 5.45 99.48 0.54 -8.53 16 21 O -0.22 -6.97 10.78 -3.79 -0.04 -7.01 16 22 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 24 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.21 4.28 8.06 -2.91 -0.02 4.26 16 26 H 0.08 2.18 7.86 -2.39 -0.02 2.16 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.34 16.09 7.19 -89.69 -0.65 15.45 16 30 H 0.06 2.02 7.86 -2.39 -0.02 2.00 16 31 H 0.04 1.86 4.60 -2.39 -0.01 1.85 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -70.36 275.68 0.81 -69.56 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.30 Total: 21.07 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 4.75 Total: -17.68 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -5.97 Total: -110.75 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.04 Total: -7.01 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.77 Total: 44.81 kcal Total: -70.36 0.81 -69.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226554854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.536 kcal (2) G-P(sol) polarization free energy of solvation -70.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds