Wall clock time and date at job start Sun Mar 29 2020 22:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99439 * 2 1 4 4 H 1.48502 * 109.46897 * 239.99655 * 3 2 1 5 5 H 1.48498 * 109.47601 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47053 * 119.99969 * 3 2 1 7 7 C 1.38805 * 120.00532 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00395 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99899 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64816 * 359.97438 * 9 7 2 11 11 C 1.54911 * 104.83312 * 204.14803 * 10 9 7 12 12 C 1.55152 * 101.58111 * 322.99109 * 11 10 9 13 13 C 1.47022 * 125.64862 * 180.02562 * 9 7 2 14 14 H 1.09000 * 110.01287 * 59.42773 * 13 9 7 15 15 C 1.53000 * 109.88016 * 298.33557 * 13 9 7 16 16 N 1.46904 * 109.47094 * 57.19413 * 15 13 9 17 17 C 1.47845 * 110.99935 * 69.15633 * 16 15 13 18 18 C 1.54908 * 104.79717 * 146.36210 * 17 16 15 19 19 C 1.55147 * 101.65049 * 322.93105 * 18 17 16 20 20 C 1.47439 * 110.99753 * 189.99635 * 16 15 13 21 21 H 0.96997 * 120.00226 * 359.97438 * 1 2 3 22 22 H 1.08994 * 110.36800 * 85.30802 * 10 9 7 23 23 H 1.09004 * 110.46010 * 323.03358 * 10 9 7 24 24 H 1.08998 * 111.00574 * 204.91097 * 11 10 9 25 25 H 1.09000 * 111.00274 * 81.06493 * 11 10 9 26 26 H 1.09004 * 110.71914 * 277.14219 * 12 11 10 27 27 H 1.09000 * 110.72379 * 153.86678 * 12 11 10 28 28 H 1.09000 * 109.47234 * 297.19102 * 15 13 9 29 29 H 1.09002 * 109.46955 * 177.19331 * 15 13 9 30 30 H 1.09005 * 110.37246 * 27.53168 * 17 16 15 31 31 H 1.08998 * 110.37354 * 265.19404 * 17 16 15 32 32 H 1.08996 * 110.99351 * 204.83721 * 18 17 16 33 33 H 1.09002 * 110.98650 * 81.01419 * 18 17 16 34 34 H 1.09000 * 110.70281 * 154.03642 * 19 18 17 35 35 H 1.08996 * 110.70548 * 277.09303 * 19 18 17 36 36 H 1.09003 * 109.88723 * 117.34017 * 20 16 15 37 37 H 1.08999 * 109.89041 * 356.15407 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1414 -2.5332 0.0028 11 6 -0.4009 -3.9318 0.6162 12 6 0.7787 -4.7524 0.0311 13 6 1.9320 -3.7274 0.0028 14 1 2.5604 -3.8516 0.8847 15 6 2.7687 -3.9209 -1.2635 16 7 3.7893 -2.8671 -1.3418 17 6 4.8146 -3.0434 -0.2913 18 6 6.1322 -2.5470 -0.9371 19 6 5.9700 -3.0408 -2.3989 20 6 4.4575 -2.8754 -2.6560 21 1 -0.4850 0.8400 0.0004 22 1 -0.5279 -2.4879 -1.0153 23 1 -0.6004 -1.7585 0.6170 24 1 -1.3585 -4.3326 0.2839 25 1 -0.3505 -3.8966 1.7045 26 1 0.5455 -5.0989 -0.9757 27 1 1.0248 -5.5917 0.6816 28 1 2.1214 -3.8656 -2.1387 29 1 3.2549 -4.8960 -1.2322 30 1 4.8993 -4.0948 -0.0164 31 1 4.5697 -2.4403 0.5830 32 1 6.9979 -3.0089 -0.4626 33 1 6.2008 -1.4598 -0.8977 34 1 6.5475 -2.4183 -3.0823 35 1 6.2668 -4.0859 -2.4878 36 1 4.2701 -1.9344 -3.1733 37 1 4.0896 -3.7093 -3.2538 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260321808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:23 Heat of formation + Delta-G solvation = 35.809556 kcal Electronic energy + Delta-G solvation = -16593.532251 eV Core-core repulsion = 14178.546004 eV Total energy + Delta-G solvation = -2414.986247 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.74764 -36.91204 -32.40646 -31.74091 -29.04099 -28.52333 -27.82284 -24.58984 -23.25835 -20.89595 -20.47851 -19.88221 -18.95871 -16.63127 -15.72347 -15.30291 -14.89229 -14.03590 -13.81625 -13.32484 -13.08524 -12.46368 -12.37134 -11.86029 -11.71153 -11.51761 -11.28535 -10.99906 -10.84403 -10.76305 -10.63967 -10.54271 -10.33550 -10.01831 -9.92487 -9.70517 -9.47111 -9.18404 -8.36823 -7.45380 -6.58209 -5.35343 -2.73033 3.56936 3.61026 3.62717 4.54033 4.74068 4.96850 5.06182 5.23522 5.53452 5.65271 5.67216 5.70179 5.78560 5.85084 5.92226 6.00282 6.01589 6.10495 6.18229 6.19611 6.33248 6.38335 6.45368 6.51663 6.57174 6.63431 6.76155 6.83450 7.16977 7.65617 7.69908 7.79057 8.03120 8.17399 8.61760 9.54959 10.13997 10.76982 11.70660 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.019113 B = 0.013876 C = 0.008797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.648711 B = 2017.413271 C = 3182.231542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.030 4.030 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.290 1.290 7 C -0.174 4.174 8 H 0.096 0.904 9 N -0.583 5.583 10 C 0.150 3.850 11 C -0.146 4.146 12 C -0.126 4.126 13 C 0.163 3.837 14 H 0.030 0.970 15 C 0.049 3.951 16 N -0.495 5.495 17 C 0.045 3.955 18 C -0.130 4.130 19 C -0.141 4.141 20 C 0.043 3.957 21 H 0.245 0.755 22 H 0.007 0.993 23 H 0.106 0.894 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.013 0.987 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.489 -8.717 -2.048 11.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.223 4.223 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.218 1.218 7 C -0.303 4.303 8 H 0.113 0.887 9 N -0.306 5.306 10 C 0.025 3.975 11 C -0.185 4.185 12 C -0.165 4.165 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.082 4.082 16 N -0.219 5.219 17 C -0.083 4.083 18 C -0.168 4.168 19 C -0.180 4.180 20 C -0.085 4.085 21 H 0.056 0.944 22 H 0.025 0.975 23 H 0.124 0.876 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.185 -7.994 -1.982 10.929 hybrid contribution 0.847 0.025 -0.396 0.935 sum 8.032 -7.969 -2.377 11.562 Atomic orbital electron populations 1.69784 1.04744 1.23985 1.60501 1.24730 0.95571 0.97331 1.04635 0.86216 0.78222 0.83935 0.77584 1.21651 1.22273 1.21776 1.19418 0.91378 0.81509 1.37983 0.88660 1.44526 1.01251 0.99469 1.85378 1.21959 0.85114 0.92522 0.97916 1.22995 0.96179 0.99471 0.99866 1.22552 0.96862 0.97077 0.99984 1.20920 0.92521 0.87235 0.93850 0.95249 1.22949 0.94096 0.89867 1.01278 1.63618 1.11218 1.46071 1.00957 1.23067 0.90035 0.98684 0.96502 1.22710 0.97378 1.01594 0.95120 1.22773 0.97354 1.00479 0.97348 1.22822 0.91862 1.01071 0.92773 0.94420 0.97497 0.87625 0.92768 0.92449 0.92282 0.92679 0.91697 0.96916 0.94742 0.89840 0.91639 0.90718 0.91421 0.92243 0.90871 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.37 10.09 55.49 0.56 -27.81 16 2 C -0.03 -0.88 5.49 -17.43 -0.10 -0.97 16 3 Si 0.91 23.21 29.55 -169.99 -5.02 18.18 16 4 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.17 -4.83 9.17 -15.06 -0.14 -4.97 16 8 H 0.10 2.57 4.99 -52.48 -0.26 2.31 16 9 N -0.58 -14.91 3.13 -162.57 -0.51 -15.42 16 10 C 0.15 3.75 5.89 -2.53 -0.01 3.74 16 11 C -0.15 -2.89 7.08 -24.58 -0.17 -3.06 16 12 C -0.13 -2.28 6.48 -24.90 -0.16 -2.44 16 13 C 0.16 3.41 3.16 -66.95 -0.21 3.20 16 14 H 0.03 0.63 7.63 -51.93 -0.40 0.24 16 15 C 0.05 0.93 4.14 -3.82 -0.02 0.91 16 16 N -0.50 -9.54 2.93 -231.25 -0.68 -10.22 16 17 C 0.04 0.76 5.40 -2.30 -0.01 0.75 16 18 C -0.13 -1.84 7.08 -24.59 -0.17 -2.02 16 19 C -0.14 -1.89 6.94 -24.91 -0.17 -2.07 16 20 C 0.04 0.70 6.86 -2.84 -0.02 0.68 16 21 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 22 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 23 H 0.11 2.98 5.88 -51.93 -0.31 2.68 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.06 1.01 7.80 -51.93 -0.41 0.61 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 1.31 7.96 -51.93 -0.41 0.89 16 29 H 0.01 0.22 7.85 -51.93 -0.41 -0.19 16 30 H 0.03 0.55 7.62 -51.93 -0.40 0.15 16 31 H 0.08 1.58 7.15 -51.93 -0.37 1.21 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.04 0.68 7.55 -51.93 -0.39 0.28 16 LS Contribution 280.73 15.07 4.23 4.23 Total: -1.00 -30.35 280.73 -8.90 -39.25 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.29 Total: -1.96 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -1.19 Total: -6.26 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.62 Total: -53.45 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.35 -8.90 -39.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260321808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.060 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds