Wall clock time and date at job start Sun Mar 29 2020 21:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46819 * 2 1 4 4 N 1.40449 * 126.81835 * 269.95200 * 3 2 1 5 5 C 1.30708 * 106.79109 * 180.02562 * 4 3 2 6 6 N 1.33238 * 108.94801 * 359.76251 * 5 4 3 7 7 C 1.30829 * 109.82678 * 0.40478 * 6 5 4 8 8 C 1.50706 * 125.96026 * 179.86643 * 7 6 5 9 9 N 1.46908 * 109.46935 * 269.68683 * 8 7 6 10 10 C 1.46894 * 110.99837 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47104 * 324.99694 * 10 9 8 12 12 C 1.52997 * 109.47515 * 84.99962 * 10 9 8 13 13 C 1.50699 * 109.46922 * 205.00026 * 10 9 8 14 14 H 1.08003 * 120.00271 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00161 * 179.97438 * 13 10 9 16 16 N 1.31509 * 119.99895 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00268 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46959 * 90.00076 * 17 15 13 19 19 H 1.48491 * 109.47193 * 210.00468 * 17 15 13 20 20 H 1.48498 * 109.47096 * 330.00620 * 17 15 13 21 21 H 1.08999 * 109.47424 * 60.00734 * 1 2 3 22 22 H 1.09009 * 109.46985 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47346 * 300.00323 * 1 2 3 24 24 H 1.08995 * 109.47346 * 239.99677 * 2 1 3 25 25 H 1.08999 * 109.47424 * 119.99266 * 2 1 3 26 26 H 1.08004 * 125.52586 * 180.02562 * 5 4 3 27 27 H 1.08993 * 109.47103 * 149.68823 * 8 7 6 28 28 H 1.09002 * 109.47193 * 29.68339 * 8 7 6 29 29 H 1.00903 * 110.99526 * 303.95351 * 9 8 7 30 30 H 1.09002 * 109.47153 * 59.99762 * 12 10 9 31 31 H 1.09001 * 109.46832 * 299.99953 * 12 10 9 32 32 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 33 33 H 0.97006 * 120.00358 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2997 2.1745 -1.1243 5 6 2.7091 3.3323 -0.6767 6 7 2.6951 3.3106 0.6554 7 6 2.2866 2.1411 1.0759 8 6 2.1366 1.7211 2.5155 9 7 3.3935 1.1221 2.9843 10 6 3.2841 0.6993 4.3868 11 1 2.6494 1.4001 4.9291 12 6 2.6695 -0.7004 4.4511 13 6 4.6548 0.6753 5.0125 14 1 5.5207 0.9466 4.4268 15 6 4.8036 0.3070 6.3328 16 7 3.7494 -0.0239 7.0460 17 14 6.5028 0.2765 7.1083 18 1 6.7990 1.6042 7.7038 19 1 6.5444 -0.7621 8.1688 20 1 7.5158 -0.0367 6.0687 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 3.0062 4.1719 -1.2876 27 1 1.3325 0.9901 2.5988 28 1 1.8999 2.5928 3.1255 29 1 3.6683 0.3508 2.3947 30 1 3.3042 -1.4012 3.9088 31 1 1.6781 -0.6829 3.9985 32 1 2.5888 -1.0143 5.4919 33 1 3.8540 -0.2834 7.9748 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308578867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:39 Heat of formation + Delta-G solvation = 66.265264 kcal Electronic energy + Delta-G solvation = -15367.831460 eV Core-core repulsion = 12850.625528 eV Total energy + Delta-G solvation = -2517.205932 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.08764 -38.01158 -36.00659 -34.73080 -32.67008 -31.23204 -30.06691 -27.25015 -26.47985 -24.84277 -22.74422 -22.19557 -21.31009 -18.53090 -17.85503 -17.03228 -16.68535 -16.19908 -16.01753 -15.29303 -14.98988 -14.76289 -14.17938 -13.88455 -13.68582 -13.56138 -13.14410 -12.93931 -12.80967 -12.70425 -12.45029 -12.14022 -12.10425 -11.89404 -11.08232 -10.98194 -10.74601 -10.54855 -10.46526 -9.08967 -8.09029 -6.18994 0.56072 1.34590 1.44532 1.46271 1.55903 1.95675 2.46052 3.11526 3.20291 3.50474 3.66340 3.90630 4.02356 4.07525 4.28464 4.46114 4.53318 4.73224 4.78542 4.80884 4.91826 5.06805 5.13682 5.34258 5.39845 5.51213 5.71494 5.78760 5.84843 6.26055 6.56561 6.67893 6.92671 7.14973 7.50392 8.96237 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039728 B = 0.006412 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.631520 B = 4365.864914 C = 4795.469913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.112 3.888 3 N -0.372 5.372 4 N -0.343 5.343 5 C 0.190 3.810 6 N -0.566 5.566 7 C 0.286 3.714 8 C 0.143 3.857 9 N -0.679 5.679 10 C 0.219 3.781 11 H 0.012 0.988 12 C -0.158 4.158 13 C -0.517 4.517 14 H 0.050 0.950 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.956 3.044 18 H -0.280 1.280 19 H -0.282 1.282 20 H -0.272 1.272 21 H 0.058 0.942 22 H 0.106 0.894 23 H 0.055 0.945 24 H 0.111 0.889 25 H 0.103 0.897 26 H 0.247 0.753 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.332 0.668 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.064 0.936 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.504 -1.341 -12.464 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.009 4.009 3 N -0.164 5.164 4 N -0.171 5.171 5 C -0.112 4.112 6 N -0.294 5.294 7 C 0.009 3.991 8 C 0.011 3.989 9 N -0.311 5.311 10 C 0.111 3.889 11 H 0.030 0.970 12 C -0.217 4.217 13 C -0.556 4.556 14 H 0.068 0.932 15 C -0.185 4.185 16 N -0.558 5.558 17 Si 0.782 3.218 18 H -0.206 1.206 19 H -0.207 1.207 20 H -0.197 1.197 21 H 0.077 0.923 22 H 0.125 0.875 23 H 0.074 0.926 24 H 0.130 0.870 25 H 0.122 0.878 26 H 0.263 0.737 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.149 0.851 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.277 -0.791 -12.696 14.185 hybrid contribution 0.289 -0.777 0.655 1.056 sum -5.988 -1.568 -12.041 13.539 Atomic orbital electron populations 1.22132 0.92466 1.04841 1.02446 1.22132 0.96700 0.76169 1.05889 1.50696 1.48675 1.13768 1.03250 1.77889 1.24755 1.05357 1.09082 1.26608 0.97545 0.96814 0.90213 1.70485 1.24724 1.21716 1.12477 1.24348 0.94597 0.87397 0.92733 1.20344 0.93131 1.00392 0.85006 1.60610 1.29176 1.36554 1.04769 1.18980 0.95262 0.91628 0.83045 0.96974 1.22251 0.97344 0.99304 1.02816 1.21407 0.93887 1.44276 0.96004 0.93168 1.25606 1.00143 0.95129 0.97584 1.69974 1.30142 1.46939 1.08792 0.85586 0.80506 0.77644 0.78028 1.20572 1.20718 1.19702 0.92333 0.87519 0.92611 0.87041 0.87844 0.73682 0.91599 0.89139 0.85122 0.94665 0.94470 0.91767 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.24 71.98 0.74 -1.92 16 2 C 0.11 2.26 6.85 86.38 0.59 2.86 16 3 N -0.37 -10.65 3.64 -338.49 -1.23 -11.88 16 4 N -0.34 -10.26 12.70 -61.25 -0.78 -11.04 16 5 C 0.19 5.56 13.03 180.77 2.36 7.92 16 6 N -0.57 -20.00 11.19 -191.78 -2.15 -22.14 16 7 C 0.29 9.51 7.50 138.23 1.04 10.55 16 8 C 0.14 4.87 5.60 85.56 0.48 5.35 16 9 N -0.68 -27.59 6.22 -499.46 -3.11 -30.70 16 10 C 0.22 10.45 2.57 44.17 0.11 10.56 16 11 H 0.01 0.65 7.80 -2.39 -0.02 0.63 16 12 C -0.16 -6.84 8.94 71.98 0.64 -6.19 16 13 C -0.52 -28.15 8.84 25.60 0.23 -27.93 16 14 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 15 C 0.01 0.76 5.30 84.66 0.45 1.21 16 16 N -0.92 -51.19 11.32 21.45 0.24 -50.95 16 17 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.10 1.99 7.72 -2.39 -0.02 1.97 16 26 H 0.25 4.90 8.06 -2.91 -0.02 4.88 16 27 H 0.07 1.93 7.06 -2.39 -0.02 1.91 16 28 H 0.09 3.31 8.06 -2.39 -0.02 3.29 16 29 H 0.33 12.54 8.46 -89.69 -0.76 11.78 16 30 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 31 H 0.04 1.33 7.45 -2.39 -0.02 1.32 16 32 H 0.06 3.19 6.07 -2.38 -0.01 3.18 16 33 H 0.26 13.93 8.31 -92.70 -0.77 13.16 16 Total: -1.00 -64.47 282.28 1.98 -62.49 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.34 Total: 16.27 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 6.63 Total: 2.41 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -7.02 Total: -126.72 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -64.47 1.98 -62.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308578867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.756 kcal (2) G-P(sol) polarization free energy of solvation -64.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds