Wall clock time and date at job start Sun Mar 29 2020 21:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47040 * 2 1 4 4 H 1.09003 * 109.46603 * 304.99406 * 3 2 1 5 5 N 1.46496 * 109.47664 * 64.99709 * 3 2 1 6 6 C 1.36935 * 120.00173 * 272.16380 * 5 3 2 7 7 H 1.08003 * 119.99908 * 359.97438 * 6 5 3 8 8 C 1.38810 * 120.00229 * 179.72593 * 6 5 3 9 9 N 1.31625 * 119.99446 * 0.27078 * 8 6 5 10 10 Si 1.86798 * 120.00210 * 180.27795 * 8 6 5 11 11 H 1.48493 * 109.47430 * 89.99666 * 10 8 6 12 12 H 1.48502 * 109.46978 * 209.99632 * 10 8 6 13 13 H 1.48500 * 109.46948 * 329.99296 * 10 8 6 14 14 C 1.50707 * 109.47013 * 185.00116 * 3 2 1 15 15 C 1.41376 * 128.00646 * 288.20288 * 14 3 2 16 16 C 1.50703 * 126.80012 * 359.97438 * 15 14 3 17 17 N 1.30166 * 106.39797 * 179.97438 * 15 14 3 18 18 O 1.20916 * 111.60386 * 359.97438 * 17 15 14 19 19 C 1.34040 * 111.57157 * 359.76302 * 18 17 15 20 20 C 1.50696 * 126.78401 * 180.28797 * 19 18 17 21 21 H 1.08997 * 109.47224 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46846 * 300.00498 * 1 2 3 23 23 H 1.08993 * 109.47180 * 60.00137 * 1 2 3 24 24 H 1.08996 * 109.47261 * 239.99279 * 2 1 3 25 25 H 1.09006 * 109.46646 * 119.99549 * 2 1 3 26 26 H 0.97003 * 119.99535 * 92.16042 * 5 3 2 27 27 H 0.97001 * 119.99447 * 180.02562 * 9 8 6 28 28 H 1.09002 * 109.47351 * 96.07338 * 16 15 14 29 29 H 1.09002 * 109.47215 * 216.06889 * 16 15 14 30 30 H 1.09001 * 109.47416 * 336.07046 * 16 15 14 31 31 H 1.09006 * 109.47086 * 264.99793 * 20 19 18 32 32 H 1.09002 * 109.46789 * 24.99770 * 20 19 18 33 33 H 1.08999 * 109.47353 * 144.99775 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 7 1.6524 2.0976 1.2517 6 6 0.4387 2.7240 1.3494 7 1 -0.2327 2.7355 0.5035 8 6 0.0691 3.3399 2.5372 9 7 0.8876 3.3262 3.5680 10 14 -1.5898 4.1878 2.6730 11 1 -2.6053 3.2152 3.1504 12 1 -1.4926 5.3144 3.6355 13 1 -1.9903 4.7079 1.3409 14 6 3.5420 1.4443 -0.1239 15 6 4.4961 1.0667 0.8487 16 6 4.2155 0.5725 2.2444 17 7 5.6649 1.2306 0.2997 18 8 5.5708 1.6407 -0.8339 19 6 4.2901 1.8017 -1.1950 20 6 3.7827 2.2873 -2.5283 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.2556 2.0875 2.0113 27 1 0.6291 3.7562 4.3982 28 1 4.2269 -0.5174 2.2531 29 1 4.9801 0.9492 2.9238 30 1 3.2366 0.9282 2.5659 31 1 3.6009 3.3610 -2.4787 32 1 4.5266 2.0799 -3.2975 33 1 2.8537 1.7724 -2.7730 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308747798.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:58 Heat of formation + Delta-G solvation = 57.958630 kcal Electronic energy + Delta-G solvation = -15908.263641 eV Core-core repulsion = 13358.404755 eV Total energy + Delta-G solvation = -2549.858886 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.43084 -36.87363 -33.72196 -33.12592 -32.09184 -29.78371 -28.28407 -27.67445 -25.79977 -23.03075 -21.85425 -19.92482 -19.70275 -17.30370 -17.10572 -16.37846 -14.90715 -14.12874 -14.04760 -13.63909 -13.25406 -13.06017 -12.96274 -12.73520 -12.58649 -12.18610 -11.95460 -11.66126 -11.13259 -10.91451 -10.81694 -10.78503 -10.37516 -10.18432 -10.03300 -9.62196 -9.27436 -8.99620 -8.59191 -7.03300 -5.81514 -3.09788 1.90871 2.72543 3.40393 3.45895 3.47544 3.55234 4.52905 4.70300 4.91843 5.28301 5.40567 5.53390 5.60329 5.71035 5.73158 5.79216 5.92514 5.96232 6.00683 6.07815 6.20809 6.37597 6.44407 6.51130 6.61580 6.65502 6.75893 7.01969 7.22537 7.66070 8.37140 8.74577 9.48358 10.03646 10.39267 11.41158 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029454 B = 0.008737 C = 0.008242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.415861 B = 3203.966812 C = 3396.269803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.248 3.752 4 H 0.061 0.939 5 N -0.718 5.718 6 C -0.236 4.236 7 H 0.074 0.926 8 C -0.012 4.012 9 N -0.931 5.931 10 Si 0.905 3.095 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.282 1.282 14 C -0.179 4.179 15 C 0.035 3.965 16 C -0.083 4.083 17 N -0.380 5.380 18 O 0.086 5.914 19 C -0.050 4.050 20 C -0.066 4.066 21 H 0.033 0.967 22 H 0.084 0.916 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.386 0.614 27 H 0.256 0.744 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.746 -4.865 -9.181 11.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.137 3.863 4 H 0.078 0.922 5 N -0.362 5.362 6 C -0.367 4.367 7 H 0.092 0.908 8 C -0.209 4.209 9 N -0.579 5.579 10 Si 0.736 3.264 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C -0.184 4.184 15 C -0.124 4.124 16 C -0.141 4.141 17 N -0.088 5.088 18 O 0.022 5.978 19 C -0.114 4.114 20 C -0.124 4.124 21 H 0.052 0.948 22 H 0.103 0.897 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.223 0.777 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.830 -4.940 -8.771 11.165 hybrid contribution -1.426 0.540 0.402 1.577 sum 3.404 -4.399 -8.369 10.049 Atomic orbital electron populations 1.21758 0.95580 0.99700 1.03291 1.22131 0.96697 0.98386 0.99997 1.18568 0.83513 0.92477 0.91701 0.92161 1.42596 1.19471 1.64278 1.09823 1.19229 0.93408 1.26705 0.97352 0.90827 1.24737 0.98395 1.01439 0.96284 1.69655 1.36113 1.49159 1.03014 0.86219 0.83798 0.79056 0.77307 1.21686 1.21838 1.20735 1.21657 0.99378 1.04817 0.92539 1.23425 0.88160 1.01381 0.99414 1.20364 1.04549 1.00689 0.88487 1.73732 1.23504 1.17908 0.93617 1.84710 1.27100 1.62617 1.23362 1.24114 0.83590 1.04420 0.99253 1.20240 1.01241 1.02091 0.88829 0.94754 0.89707 0.94001 0.94070 0.92578 0.77730 0.93439 0.90928 0.91033 0.88002 0.89680 0.90523 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.30 37.16 0.35 -2.23 16 2 C -0.13 -2.34 5.59 -26.73 -0.15 -2.49 16 3 C 0.25 4.87 2.78 -69.08 -0.19 4.67 16 4 H 0.06 1.16 7.44 -51.93 -0.39 0.78 16 5 N -0.72 -17.21 4.85 -54.55 -0.26 -17.48 16 6 C -0.24 -6.16 7.81 -15.06 -0.12 -6.28 16 7 H 0.07 1.85 7.58 -52.48 -0.40 1.45 16 8 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 9 N -0.93 -27.22 13.06 55.49 0.72 -26.49 16 10 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C -0.18 -3.35 5.18 -104.42 -0.54 -3.89 16 15 C 0.03 0.67 7.17 -82.10 -0.59 0.08 16 16 C -0.08 -1.47 10.26 36.01 0.37 -1.10 16 17 N -0.38 -7.28 12.07 33.42 0.40 -6.88 16 18 O 0.09 1.52 11.20 17.18 0.19 1.71 16 19 C -0.05 -0.82 7.49 -35.30 -0.26 -1.08 16 20 C -0.07 -0.77 10.04 36.00 0.36 -0.41 16 21 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.08 1.76 6.20 -51.93 -0.32 1.44 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.39 9.82 4.83 -40.82 -0.20 9.62 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.10 2.03 5.31 -51.93 -0.28 1.76 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16 LS Contribution 275.84 15.07 4.16 4.16 Total: -1.00 -29.71 275.84 -5.19 -34.90 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.50 Total: 6.56 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -0.87 Total: -13.16 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.86 Total: -50.85 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.19 Total: 1.71 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.71 -5.19 -34.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308747798.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.856 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds