Wall clock time and date at job start Sun Mar 29 2020 21:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47040 * 2 1 4 4 H 1.09003 * 109.46603 * 304.99406 * 3 2 1 5 5 N 1.46496 * 109.47664 * 64.99709 * 3 2 1 6 6 C 1.36935 * 120.00173 * 272.16380 * 5 3 2 7 7 H 1.08003 * 119.99908 * 359.97438 * 6 5 3 8 8 C 1.38810 * 120.00229 * 179.72593 * 6 5 3 9 9 N 1.31625 * 119.99446 * 0.27078 * 8 6 5 10 10 Si 1.86798 * 120.00210 * 180.27795 * 8 6 5 11 11 H 1.48493 * 109.47430 * 89.99666 * 10 8 6 12 12 H 1.48502 * 109.46978 * 209.99632 * 10 8 6 13 13 H 1.48500 * 109.46948 * 329.99296 * 10 8 6 14 14 C 1.50707 * 109.47013 * 185.00116 * 3 2 1 15 15 C 1.41376 * 128.00646 * 288.20288 * 14 3 2 16 16 C 1.50703 * 126.80012 * 359.97438 * 15 14 3 17 17 N 1.30166 * 106.39797 * 179.97438 * 15 14 3 18 18 O 1.20916 * 111.60386 * 359.97438 * 17 15 14 19 19 C 1.34040 * 111.57157 * 359.76302 * 18 17 15 20 20 C 1.50696 * 126.78401 * 180.28797 * 19 18 17 21 21 H 1.08997 * 109.47224 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46846 * 300.00498 * 1 2 3 23 23 H 1.08993 * 109.47180 * 60.00137 * 1 2 3 24 24 H 1.08996 * 109.47261 * 239.99279 * 2 1 3 25 25 H 1.09006 * 109.46646 * 119.99549 * 2 1 3 26 26 H 0.97003 * 119.99535 * 92.16042 * 5 3 2 27 27 H 0.97001 * 119.99447 * 180.02562 * 9 8 6 28 28 H 1.09002 * 109.47351 * 96.07338 * 16 15 14 29 29 H 1.09002 * 109.47215 * 216.06889 * 16 15 14 30 30 H 1.09001 * 109.47416 * 336.07046 * 16 15 14 31 31 H 1.09006 * 109.47086 * 264.99793 * 20 19 18 32 32 H 1.09002 * 109.46789 * 24.99770 * 20 19 18 33 33 H 1.08999 * 109.47353 * 144.99775 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 7 1.6524 2.0976 1.2517 6 6 0.4387 2.7240 1.3494 7 1 -0.2327 2.7355 0.5035 8 6 0.0691 3.3399 2.5372 9 7 0.8876 3.3262 3.5680 10 14 -1.5898 4.1878 2.6730 11 1 -2.6053 3.2152 3.1504 12 1 -1.4926 5.3144 3.6355 13 1 -1.9903 4.7079 1.3409 14 6 3.5420 1.4443 -0.1239 15 6 4.4961 1.0667 0.8487 16 6 4.2155 0.5725 2.2444 17 7 5.6649 1.2306 0.2997 18 8 5.5708 1.6407 -0.8339 19 6 4.2901 1.8017 -1.1950 20 6 3.7827 2.2873 -2.5283 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.2556 2.0875 2.0113 27 1 0.6291 3.7562 4.3982 28 1 4.2269 -0.5174 2.2531 29 1 4.9801 0.9492 2.9238 30 1 3.2366 0.9282 2.5659 31 1 3.6009 3.3610 -2.4787 32 1 4.5266 2.0799 -3.2975 33 1 2.8537 1.7724 -2.7730 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308747798.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:57 Heat of formation + Delta-G solvation = 39.891272 kcal Electronic energy + Delta-G solvation = -15909.047100 eV Core-core repulsion = 13358.404755 eV Total energy + Delta-G solvation = -2550.642345 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.84492 -38.45630 -35.29852 -34.58921 -33.66002 -31.55746 -29.70796 -28.95802 -27.34913 -24.90003 -23.27915 -21.46200 -21.05811 -19.15998 -18.58028 -17.82654 -16.63226 -15.78971 -15.72289 -15.08870 -14.73722 -14.50190 -14.18038 -14.05948 -13.88398 -13.63080 -13.20128 -13.11948 -12.93690 -12.80566 -12.37626 -12.25804 -12.02167 -11.86191 -11.65829 -11.34451 -10.95059 -10.69458 -9.97397 -8.98467 -7.88210 -5.15178 0.56906 1.27679 1.51000 1.51494 1.59166 2.29056 2.60452 3.25917 3.46063 3.62948 3.91405 4.05918 4.24121 4.43299 4.47587 4.51180 4.60011 4.71425 4.75549 4.76956 4.90853 5.00724 5.04714 5.14567 5.23341 5.25887 5.32500 5.55008 5.59951 5.73678 6.33445 7.36851 7.40706 8.13762 8.38523 9.35704 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029454 B = 0.008737 C = 0.008242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.415861 B = 3203.966812 C = 3396.269803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.250 3.750 4 H 0.068 0.932 5 N -0.731 5.731 6 C -0.219 4.219 7 H 0.084 0.916 8 C -0.078 4.078 9 N -0.972 5.972 10 Si 0.964 3.036 11 H -0.290 1.290 12 H -0.304 1.304 13 H -0.267 1.267 14 C -0.211 4.211 15 C 0.019 3.981 16 C -0.078 4.078 17 N -0.398 5.398 18 O 0.088 5.912 19 C -0.028 4.028 20 C -0.069 4.069 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.376 0.624 27 H 0.247 0.753 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.438 -5.258 -11.599 13.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C 0.141 3.859 4 H 0.086 0.914 5 N -0.374 5.374 6 C -0.351 4.351 7 H 0.102 0.898 8 C -0.270 4.270 9 N -0.623 5.623 10 Si 0.795 3.205 11 H -0.217 1.217 12 H -0.231 1.231 13 H -0.192 1.192 14 C -0.216 4.216 15 C -0.139 4.139 16 C -0.135 4.135 17 N -0.106 5.106 18 O 0.025 5.975 19 C -0.093 4.093 20 C -0.126 4.126 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.211 0.789 27 H 0.056 0.944 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.522 -5.356 -11.248 13.253 hybrid contribution -1.264 0.607 1.022 1.735 sum 3.258 -4.749 -10.226 11.736 Atomic orbital electron populations 1.21686 0.95405 1.00784 1.02029 1.22016 0.96705 0.97088 1.00686 1.18678 0.84330 0.93085 0.89844 0.91425 1.42815 1.18764 1.64503 1.11273 1.19590 0.93932 1.24478 0.97070 0.89831 1.25457 1.01553 1.03491 0.96475 1.69816 1.37922 1.51197 1.03368 0.85259 0.80307 0.77579 0.77397 1.21702 1.23074 1.19193 1.21615 0.98938 1.07360 0.93682 1.23668 0.88560 1.01651 0.99989 1.20289 1.03085 1.01906 0.88261 1.73719 1.23615 1.18945 0.94339 1.84689 1.27797 1.62211 1.22834 1.24892 0.82575 1.01518 1.00274 1.20537 1.02631 1.02540 0.86851 0.92620 0.93330 0.92694 0.91348 0.93823 0.78917 0.94373 0.88932 0.90626 0.90526 0.88766 0.87498 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.30 71.98 0.67 -4.03 16 2 C -0.12 -4.19 5.59 30.59 0.17 -4.02 16 3 C 0.25 9.42 2.78 44.25 0.12 9.54 16 4 H 0.07 2.44 7.44 -2.39 -0.02 2.42 16 5 N -0.73 -35.05 4.85 -326.50 -1.58 -36.64 16 6 C -0.22 -11.37 7.81 84.03 0.66 -10.71 16 7 H 0.08 4.08 7.58 -2.91 -0.02 4.06 16 8 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 9 N -0.97 -58.32 13.06 21.65 0.28 -58.04 16 10 Si 0.96 44.99 29.55 68.60 2.03 47.01 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 C -0.21 -7.60 5.18 -19.73 -0.10 -7.70 16 15 C 0.02 0.74 7.17 43.58 0.31 1.05 16 16 C -0.08 -2.77 10.26 71.24 0.73 -2.04 16 17 N -0.40 -14.87 12.07 -49.59 -0.60 -15.47 16 18 O 0.09 2.93 11.20 71.64 0.80 3.73 16 19 C -0.03 -0.86 7.49 25.04 0.19 -0.67 16 20 C -0.07 -1.32 10.04 71.23 0.72 -0.60 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.05 1.97 6.20 -2.39 -0.01 1.95 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.38 19.57 4.83 -92.71 -0.45 19.12 16 27 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 28 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.08 3.16 5.31 -2.39 -0.01 3.15 16 31 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.74 7.87 -2.39 -0.02 1.72 16 Total: -1.00 -64.05 275.84 5.52 -58.52 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.66 Total: 23.92 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 3.93 Total: -23.04 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -1.90 Total: -110.15 kcal Atomic # 8 Polarization: 2.93 SS G_CDS: 0.80 Total: 3.73 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.05 5.52 -58.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308747798.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.416 kcal (2) G-P(sol) polarization free energy of solvation -64.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds