Wall clock time and date at job start Sun Mar 29 2020 21:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46907 * 109.47469 * 2 1 4 4 C 1.46896 * 110.99831 * 288.00418 * 3 2 1 5 5 C 1.50702 * 109.47192 * 160.35851 * 4 3 2 6 6 H 1.08005 * 119.99762 * 4.65285 * 5 4 3 7 7 C 1.37870 * 120.00087 * 184.65761 * 5 4 3 8 8 N 1.31506 * 120.00274 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99691 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46919 * 89.99946 * 9 7 5 11 11 H 1.48508 * 109.46976 * 209.99793 * 9 7 5 12 12 H 1.48490 * 109.47150 * 329.99713 * 9 7 5 13 13 C 1.46894 * 110.99894 * 164.04467 * 3 2 1 14 14 C 1.52996 * 109.47634 * 293.95675 * 13 3 2 15 15 N 1.46497 * 109.47286 * 180.02562 * 14 13 3 16 16 C 1.34432 * 126.82381 * 124.99939 * 15 14 13 17 17 N 1.30828 * 108.07580 * 179.97438 * 16 15 14 18 18 C 1.33239 * 109.83322 * 0.02562 * 17 16 15 19 19 N 1.30716 * 108.94160 * 359.75007 * 18 17 16 20 20 H 1.09004 * 109.46962 * 299.46254 * 1 2 3 21 21 H 1.09008 * 109.47400 * 59.46175 * 1 2 3 22 22 H 1.09004 * 109.47543 * 179.46188 * 1 2 3 23 23 H 1.09003 * 109.47288 * 240.00281 * 2 1 3 24 24 H 1.08995 * 109.47395 * 120.00604 * 2 1 3 25 25 H 1.09002 * 109.47260 * 280.35194 * 4 3 2 26 26 H 1.08997 * 109.47533 * 40.35605 * 4 3 2 27 27 H 0.97003 * 120.00475 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.47063 * 53.96356 * 13 3 2 29 29 H 1.09004 * 109.46573 * 173.95746 * 13 3 2 30 30 H 1.08999 * 109.46953 * 300.00273 * 14 13 3 31 31 H 1.08995 * 109.46992 * 59.99545 * 14 13 3 32 32 H 1.08000 * 125.95618 * 0.02562 * 16 15 14 33 33 H 1.07994 * 125.52662 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7956 2.0226 -1.3043 5 6 1.8469 3.5205 -1.1466 6 1 2.1021 3.9545 -0.1911 7 6 1.5681 4.3368 -2.2221 8 7 1.2577 3.8084 -3.3857 9 14 1.6311 6.1935 -2.0264 10 1 3.0014 6.6772 -2.3318 11 1 0.6641 6.8229 -2.9615 12 1 1.2776 6.5564 -0.6306 13 6 3.4383 1.4417 0.3770 14 6 3.5973 0.9994 1.8330 15 7 5.0120 1.0566 2.2090 16 6 5.5433 1.7245 3.2477 17 7 6.8360 1.5237 3.2410 18 6 7.1660 0.7368 2.2176 19 7 6.0821 0.4203 1.5591 20 1 -0.3633 0.5055 0.8948 21 1 -0.3634 0.5222 -0.8852 22 1 -0.3634 -1.0276 -0.0097 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.5698 1.7041 -2.0023 26 1 0.8180 1.7310 -1.6881 27 1 1.0619 4.3827 -4.1425 28 1 4.0128 0.7780 -0.2692 29 1 3.8033 2.4628 0.2655 30 1 3.0228 1.6632 2.4791 31 1 3.2322 -0.0215 1.9444 32 1 4.9979 2.3220 3.9632 33 1 8.1662 0.4103 1.9741 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379341168.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:29 Heat of formation + Delta-G solvation = 92.876586 kcal Electronic energy + Delta-G solvation = -15208.447099 eV Core-core repulsion = 12692.395121 eV Total energy + Delta-G solvation = -2516.051979 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.90959 -37.42914 -34.07949 -32.65023 -31.09549 -30.44136 -28.69500 -26.13577 -23.38081 -22.71681 -21.86148 -21.25625 -19.65479 -17.25069 -16.42964 -15.83677 -15.14473 -14.62661 -14.50815 -14.26754 -13.94460 -13.74840 -13.09003 -12.58412 -12.17928 -11.83089 -11.63568 -11.32801 -11.17434 -10.91267 -10.76309 -10.53957 -10.37714 -9.97594 -9.88774 -9.68202 -9.38351 -9.26910 -8.47190 -7.43116 -6.07175 -4.08909 1.76254 2.45172 3.06082 3.28740 3.35183 3.38553 4.36889 4.39947 4.54195 4.89794 5.04512 5.15190 5.28806 5.43260 5.48655 5.61033 5.81135 6.00862 6.14341 6.22124 6.35079 6.43609 6.49649 6.53946 6.72850 6.91703 7.13301 7.25565 7.73353 8.00965 8.07357 8.17712 8.43966 8.97464 9.55350 11.03452 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.007374 C = 0.006037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.744247 B = 3796.398057 C = 4637.009297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.533 5.533 4 C 0.192 3.808 5 C -0.507 4.507 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.055 3.945 14 C 0.128 3.872 15 N -0.368 5.368 16 C 0.252 3.748 17 N -0.555 5.555 18 C 0.189 3.811 19 N -0.316 5.316 20 H 0.057 0.943 21 H 0.062 0.938 22 H 0.046 0.954 23 H 0.025 0.975 24 H 0.057 0.943 25 H -0.010 1.010 26 H 0.041 0.959 27 H 0.262 0.738 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.218 0.782 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 -6.194 10.678 12.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.259 5.259 4 C 0.067 3.933 5 C -0.546 4.546 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 C -0.074 4.074 14 C 0.006 3.994 15 N -0.158 5.158 16 C -0.045 4.045 17 N -0.283 5.283 18 C -0.114 4.114 19 N -0.145 5.145 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.065 0.935 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.008 0.992 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.234 0.766 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.730 -6.215 10.406 12.682 hybrid contribution 0.266 0.699 -0.609 0.964 sum 3.996 -5.516 9.797 11.933 Atomic orbital electron populations 1.21744 0.95213 1.00095 1.03045 1.22096 0.96248 0.90776 0.99180 1.62169 1.14264 1.14383 1.35087 1.19800 0.96690 0.94243 0.82522 1.21127 1.46501 0.90562 0.96372 0.92011 1.24980 0.95376 0.99013 0.95199 1.69945 1.47464 1.35336 1.01043 0.86517 0.77780 0.85218 0.78034 1.20768 1.21186 1.19756 1.22113 0.91127 1.02403 0.91759 1.22071 0.73959 1.03571 0.99807 1.50621 1.08527 1.35632 1.21060 1.26040 0.90491 0.95943 0.92020 1.70499 1.12067 1.21386 1.24364 1.25943 0.98932 0.95836 0.90720 1.78049 0.94674 1.20688 1.21078 0.92343 0.91874 0.93536 0.95680 0.92456 0.99225 0.94148 0.92857 0.94589 0.89553 0.87315 0.89663 0.76618 0.77020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.98 37.15 0.37 -1.91 16 2 C 0.05 0.77 5.55 -3.82 -0.02 0.75 16 3 N -0.53 -10.73 4.38 -236.08 -1.03 -11.76 16 4 C 0.19 4.85 4.59 -4.98 -0.02 4.83 16 5 C -0.51 -13.90 8.61 -34.44 -0.30 -14.20 16 6 H 0.06 1.67 7.66 -52.48 -0.40 1.27 16 7 C 0.06 1.56 5.46 -17.83 -0.10 1.46 16 8 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 13 C 0.06 1.01 5.00 -3.83 -0.02 1.00 16 14 C 0.13 1.77 6.51 -4.05 -0.03 1.75 16 15 N -0.37 -5.31 3.69 -62.64 -0.23 -5.54 16 16 C 0.25 3.18 12.63 -90.65 -1.14 2.04 16 17 N -0.56 -7.93 11.19 -15.83 -0.18 -8.10 16 18 C 0.19 2.61 13.03 -91.81 -1.20 1.41 16 19 N -0.32 -5.04 12.57 29.29 0.37 -4.67 16 20 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 21 H 0.06 1.15 6.52 -51.92 -0.34 0.81 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 24 H 0.06 0.82 5.94 -51.93 -0.31 0.51 16 25 H -0.01 -0.28 8.00 -51.93 -0.42 -0.69 16 26 H 0.04 1.08 6.24 -51.93 -0.32 0.76 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 29 H 0.09 1.79 7.32 -51.93 -0.38 1.41 16 30 H 0.11 1.29 8.09 -51.93 -0.42 0.87 16 31 H 0.09 1.10 6.28 -51.93 -0.33 0.77 16 32 H 0.22 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.21 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 280.27 15.07 4.22 4.22 Total: -1.00 -31.83 280.27 -8.17 -40.00 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.58 Total: -1.99 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.45 Total: -2.88 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.34 Total: -55.77 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.83 -8.17 -40.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379341168.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.877 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds