Wall clock time and date at job start Sun Mar 29 2020 21:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47113 * 2 1 4 4 H 1.09004 * 109.47655 * 54.49857 * 3 2 1 5 5 C 1.50697 * 109.47269 * 174.50464 * 3 2 1 6 6 H 1.08000 * 120.00336 * 119.99710 * 5 3 2 7 7 C 1.37876 * 119.99777 * 299.99935 * 5 3 2 8 8 N 1.31520 * 119.99919 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00204 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46774 * 90.00138 * 9 7 5 11 11 H 1.48498 * 109.47144 * 210.00153 * 9 7 5 12 12 H 1.48494 * 109.46914 * 330.00178 * 9 7 5 13 13 N 1.46900 * 109.47408 * 294.50119 * 3 2 1 14 14 C 1.46893 * 111.00390 * 154.42336 * 13 3 2 15 15 C 1.53007 * 109.47547 * 174.79082 * 14 13 3 16 16 N 1.46497 * 109.47102 * 180.02562 * 15 14 13 17 17 C 1.35494 * 126.97749 * 269.68357 * 16 15 14 18 18 N 1.30520 * 107.30687 * 179.84003 * 17 16 15 19 19 N 1.28595 * 109.67110 * 0.44018 * 18 17 16 20 20 C 1.30523 * 109.67271 * 359.71914 * 19 18 17 21 21 H 1.08994 * 109.47308 * 186.01053 * 1 2 3 22 22 H 1.08999 * 109.46878 * 306.01056 * 1 2 3 23 23 H 1.09002 * 109.47191 * 66.00459 * 1 2 3 24 24 H 1.09007 * 109.46635 * 240.00021 * 2 1 3 25 25 H 1.08994 * 109.46780 * 119.99814 * 2 1 3 26 26 H 0.97000 * 119.99493 * 179.97438 * 8 7 5 27 27 H 1.00902 * 110.99936 * 30.46939 * 13 3 2 28 28 H 1.09005 * 109.47598 * 294.78864 * 14 13 3 29 29 H 1.09004 * 109.47296 * 54.79152 * 14 13 3 30 30 H 1.08996 * 109.46710 * 300.00441 * 15 14 13 31 31 H 1.08996 * 109.46959 * 60.00004 * 15 14 13 32 32 H 1.07999 * 126.34773 * 359.97438 * 17 16 15 33 33 H 1.08006 * 126.34330 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5985 1.9840 0.8366 5 6 3.5408 1.4447 0.1361 6 1 4.1525 1.8870 -0.6364 7 6 4.1331 0.8820 1.2467 8 7 3.3883 0.3438 2.1876 9 14 5.9936 0.8840 1.4152 10 1 6.4255 2.1189 2.1177 11 1 6.4213 -0.3048 2.1955 12 1 6.6127 0.8396 0.0662 13 7 1.6618 2.0956 -1.2602 14 6 1.5682 3.5518 -1.0912 15 6 1.3011 4.2068 -2.4479 16 7 1.2085 5.6590 -2.2793 17 6 0.0902 6.3802 -2.0237 18 7 0.4460 7.6334 -1.9445 19 7 1.7122 7.7374 -2.1437 20 6 2.2226 6.5545 -2.3531 21 1 -0.3633 -1.0219 0.1076 22 1 -0.3633 0.6042 0.8313 23 1 -0.3634 0.4179 -0.9389 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 3.8051 -0.0524 2.9688 27 1 0.7979 1.7170 -1.6187 28 1 0.7523 3.7866 -0.4075 29 1 2.5050 3.9311 -0.6828 30 1 2.1169 3.9720 -3.1316 31 1 0.3644 3.8275 -2.8563 32 1 -0.9099 5.9900 -1.9052 33 1 3.2609 6.3310 -2.5494 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381284489.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:27 Heat of formation + Delta-G solvation = 56.353898 kcal Electronic energy + Delta-G solvation = -15171.335024 eV Core-core repulsion = 12653.699303 eV Total energy + Delta-G solvation = -2517.635721 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.00343 -38.50053 -36.38871 -34.30436 -32.90333 -31.52327 -29.72895 -27.94189 -25.00120 -23.83525 -23.21907 -22.50967 -21.47122 -18.51599 -18.18968 -17.11217 -16.77529 -16.38425 -16.01991 -15.65460 -15.46181 -14.82531 -14.68031 -13.88393 -13.54874 -13.46884 -13.09362 -12.74209 -12.59557 -12.50808 -12.36263 -11.99258 -11.73306 -11.50737 -11.35055 -11.05318 -10.99678 -10.44999 -10.40861 -9.12625 -8.09351 -6.21076 0.93572 1.40398 1.42724 1.51785 1.62974 1.92697 2.42431 3.17101 3.52984 3.67260 3.81483 3.95213 4.11200 4.40168 4.42956 4.46877 4.55801 4.58565 4.71255 4.94252 5.00999 5.09319 5.21933 5.26891 5.37446 5.57698 5.72420 5.88629 5.98622 6.30117 6.42754 6.91332 6.95676 7.48305 7.74462 8.93920 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026709 B = 0.006821 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.076402 B = 4103.703979 C = 4879.097246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.226 3.774 4 H -0.033 1.033 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.677 5.677 14 C 0.059 3.941 15 C 0.121 3.879 16 N -0.468 5.468 17 C 0.159 3.841 18 N -0.350 5.350 19 N -0.349 5.349 20 C 0.159 3.841 21 H 0.055 0.945 22 H 0.033 0.967 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.260 0.740 27 H 0.336 0.664 28 H 0.019 0.981 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.252 0.748 33 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.931 2.792 -9.287 11.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.118 3.882 4 H -0.015 1.015 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.310 5.310 14 C -0.072 4.072 15 C -0.001 4.001 16 N -0.158 5.158 17 C -0.129 4.129 18 N -0.189 5.189 19 N -0.188 5.188 20 C -0.131 4.131 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.155 0.845 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.268 0.732 33 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -5.363 4.204 -9.184 11.436 hybrid contribution 0.404 -1.421 1.076 1.827 sum -4.960 2.783 -8.108 9.904 Atomic orbital electron populations 1.21762 0.96072 1.01166 1.00749 1.21603 0.94374 0.98729 1.01430 1.18913 0.94011 0.90787 0.84509 1.01515 1.21499 0.92879 1.36477 1.04203 0.92704 1.25671 1.02081 0.95443 0.95744 1.69999 1.36236 1.39925 1.09918 0.85647 0.81080 0.77270 0.78182 1.20801 1.21081 1.19152 1.60434 1.37365 1.02003 1.31177 1.22027 0.99882 0.89900 0.95397 1.22005 1.07219 0.72926 0.97931 1.46636 1.07772 1.10222 1.51134 1.27189 0.95692 0.88221 1.01845 1.74115 1.06073 1.18027 1.20704 1.74135 1.02598 1.22368 1.19720 1.27105 0.98132 0.85093 1.02732 0.92608 0.94765 0.91563 0.93924 0.91735 0.93131 0.84465 0.96313 0.93056 0.86309 0.85533 0.73191 0.74015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 9.64 71.98 0.69 -3.95 16 2 C -0.12 -5.29 5.36 30.59 0.16 -5.13 16 3 C 0.23 10.34 2.02 44.17 0.09 10.43 16 4 H -0.03 -1.71 7.85 -2.39 -0.02 -1.73 16 5 C -0.51 -26.74 8.57 25.60 0.22 -26.52 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.01 0.47 5.29 84.65 0.45 0.92 16 8 N -0.92 -51.52 11.29 21.45 0.24 -51.28 16 9 Si 0.95 42.74 29.54 68.60 2.03 44.76 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 13 N -0.68 -23.31 6.27 -495.45 -3.11 -26.42 16 14 C 0.06 1.75 5.78 86.31 0.50 2.25 16 15 C 0.12 2.32 6.50 86.38 0.56 2.89 16 16 N -0.47 -10.42 2.75 -533.48 -1.47 -11.88 16 17 C 0.16 3.68 12.74 180.11 2.30 5.98 16 18 N -0.35 -11.03 12.21 -59.99 -0.73 -11.76 16 19 N -0.35 -11.28 12.21 -59.99 -0.73 -12.01 16 20 C 0.16 3.98 12.74 180.11 2.30 6.27 16 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.07 1.77 6.66 -2.39 -0.02 1.75 16 24 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.06 3.28 5.94 -2.39 -0.01 3.27 16 26 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 27 H 0.34 9.61 6.64 -89.69 -0.60 9.02 16 28 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.05 1.86 7.94 -2.38 -0.02 1.84 16 30 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.25 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.24 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -67.43 280.35 4.00 -63.43 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.50 Total: 12.02 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 7.26 Total: -6.86 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -5.79 Total: -113.36 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -67.43 4.00 -63.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381284489.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.784 kcal (2) G-P(sol) polarization free energy of solvation -67.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds