Wall clock time and date at job start Sun Mar 29 2020 21:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35322 * 125.86299 * 2 1 4 4 C 1.35351 * 106.16806 * 180.26356 * 3 2 1 5 5 C 1.50701 * 126.74701 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46967 * 94.99813 * 5 4 3 7 7 C 1.46905 * 110.99935 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46808 * 180.02562 * 7 6 5 9 9 C 1.53008 * 109.46976 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.47188 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99902 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99964 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99996 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99804 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47186 * 60.00273 * 14 12 10 16 16 H 1.48505 * 109.46933 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47062 * 299.99911 * 14 12 10 18 18 N 1.33769 * 106.50107 * 0.02562 * 4 3 2 19 19 N 1.28629 * 108.88659 * 359.97438 * 18 4 3 20 20 H 1.08997 * 109.47250 * 269.71379 * 1 2 3 21 21 H 1.09003 * 109.47080 * 29.71873 * 1 2 3 22 22 H 1.09006 * 109.46804 * 149.71734 * 1 2 3 23 23 H 1.07991 * 126.91601 * 0.22443 * 3 2 1 24 24 H 1.08998 * 109.47347 * 215.00053 * 5 4 3 25 25 H 1.08998 * 109.47646 * 335.00195 * 5 4 3 26 26 H 1.00905 * 110.99511 * 56.04992 * 6 5 4 27 27 H 1.08999 * 109.47382 * 300.00430 * 7 6 5 28 28 H 1.09004 * 109.46938 * 60.00708 * 7 6 5 29 29 H 1.08999 * 109.47335 * 300.00256 * 8 7 6 30 30 H 1.08992 * 109.47306 * 60.00692 * 8 7 6 31 31 H 1.08999 * 109.47002 * 300.00097 * 9 8 7 32 32 H 1.09004 * 109.46579 * 59.99768 * 9 8 7 33 33 H 0.96998 * 120.00224 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0967 0.0000 4 6 3.5321 0.6405 -0.0060 5 6 4.7880 1.4736 -0.0079 6 7 5.2676 1.6394 1.3707 7 6 6.4937 2.4477 1.4078 8 6 6.9621 2.5975 2.8567 9 6 8.2388 3.4399 2.8955 10 6 8.6997 3.5879 4.3225 11 1 8.1385 3.1269 5.1219 12 6 9.8385 4.3110 4.6076 13 7 10.5222 4.8720 3.6342 14 14 10.4103 4.4940 6.3766 15 1 10.6849 3.1517 6.9493 16 1 11.6494 5.3117 6.4142 17 1 9.3509 5.1645 7.1724 18 7 3.4576 -0.6951 -0.0099 19 7 2.2193 -1.0430 -0.0060 20 1 -0.3633 -0.0051 1.0276 21 1 -0.3633 0.8925 -0.5095 22 1 -0.3633 -0.8875 -0.5183 23 1 1.9381 2.1282 0.0034 24 1 5.5540 0.9748 -0.6016 25 1 4.5744 2.4519 -0.4383 26 1 5.4115 0.7442 1.8135 27 1 7.2714 1.9553 0.8240 28 1 6.2923 3.4329 0.9871 29 1 6.1845 3.0896 3.4409 30 1 7.1636 1.6123 3.2771 31 1 9.0165 2.9480 2.3112 32 1 8.0368 4.4251 2.4751 33 1 11.3231 5.3810 3.8348 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388816173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:35 Heat of formation + Delta-G solvation = 59.500124 kcal Electronic energy + Delta-G solvation = -14343.854596 eV Core-core repulsion = 11826.355306 eV Total energy + Delta-G solvation = -2517.499291 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.19038 -37.91672 -35.88913 -35.20844 -33.53432 -31.81336 -28.98675 -28.37373 -26.24677 -23.90980 -23.00813 -22.22697 -21.69172 -18.48511 -18.06114 -17.54670 -16.91704 -16.54135 -15.91149 -15.57448 -15.45543 -14.43969 -14.41198 -14.02014 -13.94021 -13.47294 -13.35103 -13.13588 -12.65062 -12.55324 -12.40026 -12.25477 -11.81512 -11.49417 -11.39018 -11.14764 -10.98466 -10.52952 -10.22783 -9.38758 -8.18451 -6.29334 0.66461 1.40955 1.44064 1.44369 1.52300 1.61032 2.42628 3.14486 3.25273 3.54861 3.77047 4.05565 4.20796 4.29526 4.36242 4.40032 4.54622 4.65952 4.68426 4.76657 4.98827 5.02231 5.12540 5.14552 5.27015 5.53743 5.71522 5.78065 5.88235 6.03217 6.29149 6.35697 6.87453 7.39642 7.50309 8.93286 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.068779 B = 0.003659 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.004732 B = 7650.990144 C = 7797.700460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.289 5.289 3 C -0.016 4.016 4 C -0.038 4.038 5 C 0.147 3.853 6 N -0.686 5.686 7 C 0.072 3.928 8 C -0.094 4.094 9 C 0.026 3.974 10 C -0.546 4.546 11 H 0.058 0.942 12 C -0.001 4.001 13 N -0.933 5.933 14 Si 0.965 3.035 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.266 1.266 18 N -0.308 5.308 19 N -0.124 5.124 20 H 0.105 0.895 21 H 0.133 0.867 22 H 0.107 0.893 23 H 0.232 0.768 24 H 0.040 0.960 25 H 0.111 0.889 26 H 0.338 0.662 27 H 0.024 0.976 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.044 0.956 31 H -0.010 1.010 32 H -0.004 1.004 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.630 -5.661 -8.727 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.083 5.083 3 C -0.168 4.168 4 C -0.177 4.177 5 C 0.016 3.984 6 N -0.317 5.317 7 C -0.057 4.057 8 C -0.132 4.132 9 C -0.012 4.012 10 C -0.584 4.584 11 H 0.076 0.924 12 C -0.199 4.199 13 N -0.574 5.574 14 Si 0.789 3.211 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.191 1.191 18 N -0.175 5.175 19 N -0.103 5.103 20 H 0.123 0.877 21 H 0.151 0.849 22 H 0.126 0.874 23 H 0.248 0.752 24 H 0.058 0.942 25 H 0.129 0.871 26 H 0.155 0.845 27 H 0.042 0.958 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.009 0.991 32 H 0.015 0.985 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.929 -6.595 -8.652 24.479 hybrid contribution 1.197 0.573 0.439 1.398 sum -20.732 -6.023 -8.213 23.098 Atomic orbital electron populations 1.22752 0.69677 1.07893 1.06615 1.47682 1.11077 1.04207 1.45333 1.23966 0.89787 0.96138 1.06951 1.22098 0.96726 0.90664 1.08256 1.20130 0.90200 0.98199 0.89853 1.60588 1.32582 1.21457 1.17025 1.21873 0.89241 0.97770 0.96768 1.21383 0.97160 0.99169 0.95450 1.18963 0.92620 0.94177 0.95413 1.21693 1.09896 1.32474 0.94310 0.92396 1.25983 0.96725 0.95162 1.01982 1.70084 1.17994 1.35350 1.33932 0.85504 0.77710 0.78465 0.79390 1.19339 1.20700 1.19084 1.74979 1.10681 1.13849 1.17951 1.78184 0.96495 1.13711 1.21888 0.87671 0.84914 0.87446 0.75207 0.94203 0.87115 0.84472 0.95803 0.90584 0.92688 0.93760 0.99122 0.98524 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 11.39 127.77 1.46 1.82 16 2 N -0.29 -5.11 3.74 -369.22 -1.38 -6.49 16 3 C -0.02 -0.28 11.55 83.49 0.96 0.69 16 4 C -0.04 -0.96 6.76 41.60 0.28 -0.68 16 5 C 0.15 3.64 6.25 85.56 0.53 4.17 16 6 N -0.69 -20.49 6.49 -517.92 -3.36 -23.86 16 7 C 0.07 2.50 5.69 86.30 0.49 2.99 16 8 C -0.09 -3.98 5.41 30.60 0.17 -3.82 16 9 C 0.03 1.40 4.97 29.85 0.15 1.54 16 10 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 11 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 12 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 13 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 14 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 18 N -0.31 -9.46 12.41 -48.60 -0.60 -10.07 16 19 N -0.12 -3.33 13.16 37.02 0.49 -2.84 16 20 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 21 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 22 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 23 H 0.23 1.96 8.06 -2.92 -0.02 1.94 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 25 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.34 10.65 8.72 -89.69 -0.78 9.87 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 33 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -75.22 288.92 2.50 -72.72 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 0.31 Total: 5.39 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 4.74 Total: -24.55 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -4.57 Total: -100.59 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -75.22 2.50 -72.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388816173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.225 kcal (2) G-P(sol) polarization free energy of solvation -75.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds