Wall clock time and date at job start Sun Mar 29 2020 21:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47184 * 2 1 4 4 C 1.50700 * 109.47202 * 239.99798 * 2 1 3 5 5 H 1.08002 * 120.00100 * 274.89981 * 4 2 1 6 6 C 1.37880 * 119.99941 * 94.90451 * 4 2 1 7 7 N 1.31515 * 120.00086 * 183.89537 * 6 4 2 8 8 Si 1.86799 * 120.00148 * 3.88538 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.42591 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.42885 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.43060 * 8 6 4 12 12 N 1.46900 * 109.47308 * 119.99936 * 2 1 3 13 13 C 1.46905 * 111.00101 * 176.04915 * 12 2 1 14 14 C 1.46902 * 110.99962 * 299.99666 * 12 2 1 15 15 C 1.53002 * 109.47438 * 169.99775 * 14 12 2 16 16 N 1.46488 * 109.47452 * 180.02562 * 15 14 12 17 17 C 1.34433 * 126.82873 * 125.00126 * 16 15 14 18 18 N 1.30824 * 108.08366 * 179.97438 * 17 16 15 19 19 C 1.33247 * 109.83125 * 0.02562 * 18 17 16 20 20 N 1.30719 * 108.94295 * 359.75117 * 19 18 17 21 21 H 1.09000 * 109.47001 * 186.77157 * 1 2 3 22 22 H 1.08991 * 109.47541 * 66.76836 * 1 2 3 23 23 H 1.09003 * 109.47235 * 306.75987 * 1 2 3 24 24 H 0.96996 * 120.00229 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.47366 * 59.99548 * 13 12 2 26 26 H 1.09000 * 109.46890 * 180.02562 * 13 12 2 27 27 H 1.08997 * 109.46501 * 299.99899 * 13 12 2 28 28 H 1.08998 * 109.47296 * 290.00509 * 14 12 2 29 29 H 1.09005 * 109.46858 * 50.00531 * 14 12 2 30 30 H 1.08999 * 109.46954 * 300.00604 * 15 14 12 31 31 H 1.09004 * 109.46745 * 60.00053 * 15 14 12 32 32 H 1.08005 * 125.95089 * 0.02562 * 17 16 15 33 33 H 1.07992 * 125.52811 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1370 -1.7854 -1.2284 6 6 2.3584 0.0119 -2.3587 7 7 2.7234 -0.6130 -3.4568 8 14 2.2813 1.8780 -2.3277 9 1 3.5499 2.4166 -1.7748 10 1 2.0869 2.3884 -3.7085 11 1 1.1458 2.3124 -1.4749 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7944 1.1870 14 6 1.5487 -0.0263 2.4211 15 6 1.8627 -0.9042 3.6342 16 7 1.3925 -0.2401 4.8524 17 6 0.5562 -0.7469 5.7748 18 7 0.3847 0.1552 6.7067 19 6 1.0917 1.2463 6.4151 20 7 1.7299 1.0507 5.2912 21 1 -0.3633 -1.0205 0.1212 22 1 -0.3634 0.4053 -0.9442 23 1 -0.3634 0.6150 0.8233 24 1 2.9524 -0.1049 -4.2507 25 1 3.9187 0.2052 1.1591 26 1 3.8209 -1.3116 2.0859 27 1 3.8029 -1.3530 0.3067 28 1 2.0519 0.9347 2.5279 29 1 0.4722 0.1324 2.3564 30 1 1.3595 -1.8651 3.5272 31 1 2.9392 -1.0630 3.6989 32 1 0.1052 -1.7280 5.7511 33 1 1.1338 2.1450 7.0125 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388989708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:30 Heat of formation + Delta-G solvation = 78.714655 kcal Electronic energy + Delta-G solvation = -15361.333086 eV Core-core repulsion = 12844.667001 eV Total energy + Delta-G solvation = -2516.666086 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.94626 -39.15866 -35.63455 -34.35125 -32.17264 -32.05331 -29.91472 -27.46029 -26.16414 -24.11138 -22.86583 -22.17839 -20.99472 -19.13829 -18.27495 -17.05161 -16.79414 -16.07430 -15.88763 -15.37570 -15.10769 -14.94868 -14.64922 -14.50005 -13.97701 -13.38715 -13.11573 -12.94321 -12.70236 -12.59021 -12.25015 -12.08565 -11.97958 -11.84077 -11.11091 -10.97734 -10.78934 -10.77072 -10.56263 -9.12750 -8.31257 -6.33323 0.74271 1.26879 1.30860 1.39107 1.41087 2.04596 2.28868 2.97084 3.23317 3.56090 3.67121 3.87301 4.10289 4.27355 4.37028 4.40659 4.52867 4.67022 4.76273 4.80134 4.84411 4.91478 5.11476 5.27236 5.30710 5.43130 5.52337 5.64329 5.93813 6.01605 6.28792 6.58998 6.75587 7.15275 7.32508 8.85166 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.048987 B = 0.006152 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.445786 B = 4549.988569 C = 4686.819342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.180 3.820 3 H -0.009 1.009 4 C -0.495 4.495 5 H 0.045 0.955 6 C 0.021 3.979 7 N -0.942 5.942 8 Si 0.927 3.073 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.253 1.253 12 N -0.531 5.531 13 C 0.038 3.962 14 C 0.045 3.955 15 C 0.139 3.861 16 N -0.380 5.380 17 C 0.263 3.737 18 N -0.578 5.578 19 C 0.191 3.809 20 N -0.360 5.360 21 H 0.059 0.941 22 H 0.039 0.961 23 H 0.046 0.954 24 H 0.266 0.734 25 H 0.004 0.996 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.019 0.981 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.093 0.907 32 H 0.261 0.739 33 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 0.723 16.910 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.072 3.928 3 H 0.009 0.991 4 C -0.534 4.534 5 H 0.063 0.937 6 C -0.177 4.177 7 N -0.582 5.582 8 Si 0.752 3.248 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.177 1.177 12 N -0.255 5.255 13 C -0.110 4.110 14 C -0.084 4.084 15 C 0.018 3.982 16 N -0.171 5.171 17 C -0.033 4.033 18 N -0.306 5.306 19 C -0.112 4.112 20 N -0.189 5.189 21 H 0.078 0.922 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.023 0.977 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.095 0.905 30 H 0.158 0.842 31 H 0.111 0.889 32 H 0.277 0.723 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.159 0.719 16.585 16.899 hybrid contribution 0.562 1.497 -0.793 1.785 sum -2.597 2.217 15.792 16.157 Atomic orbital electron populations 1.21876 0.96058 1.01217 0.99457 1.19637 0.93567 0.91240 0.88321 0.99114 1.20994 1.42384 0.94378 0.95655 0.93700 1.25687 0.94660 1.02249 0.95121 1.70007 1.47885 1.37506 1.02823 0.86046 0.79524 0.81678 0.77523 1.20014 1.21004 1.17669 1.62052 1.10646 1.51740 1.01101 1.22236 0.87339 0.99022 1.02384 1.22275 1.01110 0.95112 0.89891 1.21915 1.02057 0.95832 0.78435 1.50636 1.35383 1.11174 1.19909 1.26949 0.90644 1.01226 0.84467 1.70567 1.27914 1.02556 1.29580 1.26555 0.92569 0.99109 0.92924 1.78029 1.26320 0.98044 1.16461 0.92175 0.94145 0.93563 0.92485 0.97741 0.89664 0.92394 0.96250 0.90471 0.84235 0.88927 0.72349 0.74448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.76 71.98 0.63 -4.48 16 2 C 0.18 8.07 1.70 44.17 0.08 8.14 16 3 H -0.01 -0.41 5.35 -2.39 -0.01 -0.42 16 4 C -0.50 -26.91 7.46 25.60 0.19 -26.72 16 5 H 0.04 2.72 8.04 -2.91 -0.02 2.70 16 6 C 0.02 1.18 5.47 84.66 0.46 1.65 16 7 N -0.94 -57.11 13.96 21.45 0.30 -56.81 16 8 Si 0.93 43.77 26.95 68.60 1.85 45.62 16 9 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.25 -11.26 6.88 99.48 0.68 -10.57 16 12 N -0.53 -19.83 4.62 -901.46 -4.17 -24.00 16 13 C 0.04 1.39 9.06 127.69 1.16 2.55 16 14 C 0.05 1.38 4.99 86.30 0.43 1.81 16 15 C 0.14 3.09 6.48 86.38 0.56 3.65 16 16 N -0.38 -8.89 3.69 -352.08 -1.30 -10.19 16 17 C 0.26 5.00 12.63 180.36 2.28 7.27 16 18 N -0.58 -13.51 11.19 -204.00 -2.28 -15.80 16 19 C 0.19 4.45 13.03 180.76 2.36 6.81 16 20 N -0.36 -9.96 12.57 -61.24 -0.77 -10.73 16 21 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 23 H 0.05 1.59 6.57 -2.39 -0.02 1.58 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.08 2.37 6.30 -2.39 -0.02 2.36 16 27 H 0.06 2.45 6.96 -2.39 -0.02 2.43 16 28 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 29 H 0.08 2.36 5.97 -2.38 -0.01 2.35 16 30 H 0.14 2.28 8.09 -2.39 -0.02 2.27 16 31 H 0.09 2.01 6.47 -2.39 -0.02 1.99 16 32 H 0.26 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.24 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -68.90 274.37 2.84 -66.06 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.07 Total: 5.18 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 8.14 Total: 0.67 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -8.22 Total: -117.53 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.85 Total: 45.62 kcal Total: -68.90 2.84 -66.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388989708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.775 kcal (2) G-P(sol) polarization free energy of solvation -68.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds