Wall clock time and date at job start Sun Mar 29 2020 21:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47388 * 2 1 4 4 H 1.09000 * 109.47650 * 179.83069 * 3 2 1 5 5 C 1.50701 * 109.47205 * 299.82681 * 3 2 1 6 6 H 1.08005 * 120.00091 * 119.99085 * 5 3 2 7 7 C 1.37878 * 120.00337 * 300.00153 * 5 3 2 8 8 N 1.31516 * 119.99571 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00123 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47066 * 60.00128 * 9 7 5 11 11 H 1.48504 * 109.47033 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47333 * 299.99679 * 9 7 5 13 13 N 1.46905 * 109.47227 * 59.82767 * 3 2 1 14 14 C 1.46899 * 110.99532 * 85.93300 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.53237 * 14 13 3 16 16 N 1.30831 * 125.96193 * 90.02880 * 15 14 13 17 17 C 1.33237 * 109.83280 * 180.02562 * 16 15 14 18 18 N 1.30714 * 108.94670 * 359.97438 * 17 16 15 19 19 N 1.34430 * 125.96205 * 269.71818 * 15 14 13 20 20 C 1.46497 * 126.82510 * 0.02562 * 19 15 14 21 21 H 1.09000 * 109.47118 * 175.59158 * 1 2 3 22 22 H 1.08998 * 109.47497 * 55.58485 * 1 2 3 23 23 H 1.09007 * 109.46710 * 295.58568 * 1 2 3 24 24 H 1.09001 * 109.47790 * 120.00189 * 2 1 3 25 25 H 1.09005 * 109.47355 * 240.00520 * 2 1 3 26 26 H 0.97002 * 119.99491 * 180.02562 * 8 7 5 27 27 H 1.00901 * 110.99640 * 209.89048 * 13 3 2 28 28 H 1.08995 * 109.47219 * 295.53068 * 14 13 3 29 29 H 1.08999 * 109.47280 * 55.53745 * 14 13 3 30 30 H 1.07998 * 125.52752 * 180.02562 * 17 16 15 31 31 H 1.08999 * 109.47325 * 89.99908 * 20 19 15 32 32 H 1.08998 * 109.47544 * 210.00008 * 20 19 15 33 33 H 1.09006 * 109.47097 * 329.99977 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0030 5 6 1.5412 2.1517 -1.2326 6 1 0.9199 3.0299 -1.1362 7 6 1.8778 1.6794 -2.4835 8 7 2.6346 0.6103 -2.6009 9 14 1.2589 2.5581 -4.0113 10 1 1.7535 3.9583 -4.0115 11 1 1.7579 1.8573 -5.2217 12 1 -0.2261 2.5576 -4.0153 13 7 1.5470 2.1363 1.1974 14 6 2.4394 1.9095 2.3420 15 6 1.9635 2.7222 3.5185 16 7 1.1141 2.3273 4.4318 17 6 0.9216 3.3005 5.3212 18 7 1.6496 4.3328 4.9850 19 7 2.3422 3.9773 3.8160 20 6 3.2864 4.8103 3.0672 21 1 -0.3633 -1.0246 -0.0790 22 1 -0.3634 0.5808 -0.8478 23 1 -0.3633 0.4438 0.9270 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 2.8717 0.2782 -3.4810 27 1 1.4287 3.1226 1.0208 28 1 2.4322 0.8516 2.6043 29 1 3.4529 2.2115 2.0779 30 1 0.2704 3.2452 6.1810 31 1 2.7463 5.3849 2.3146 32 1 3.7914 5.4921 3.7514 33 1 4.0239 4.1739 2.5782 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389357054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:11 Heat of formation + Delta-G solvation = 68.278317 kcal Electronic energy + Delta-G solvation = -15485.990394 eV Core-core repulsion = 12968.871755 eV Total energy + Delta-G solvation = -2517.118640 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.06224 -38.22079 -35.25047 -34.61217 -33.05551 -31.65479 -28.91219 -28.03837 -26.17830 -24.96643 -22.94740 -21.54773 -20.89910 -18.53975 -17.78025 -17.10517 -16.81362 -16.09147 -15.77352 -15.29752 -15.07929 -14.53519 -14.25279 -14.05319 -13.86056 -13.51636 -13.35906 -12.83795 -12.72239 -12.50961 -12.38399 -11.97221 -11.63616 -11.30032 -11.01195 -10.83010 -10.71668 -10.55819 -10.48947 -9.09168 -8.08225 -6.19845 0.56090 1.38613 1.44569 1.47073 1.53084 1.95390 2.44527 3.12615 3.21377 3.57339 3.70502 3.95446 4.19748 4.31872 4.54084 4.60584 4.66896 4.72509 4.83146 4.98292 5.30206 5.32796 5.41844 5.50316 5.56337 5.72625 5.79596 5.81690 5.89925 6.29473 6.41495 6.70523 6.97893 7.13614 7.48556 8.96447 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.036502 B = 0.007022 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.902847 B = 3986.346319 C = 4363.257063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C 0.227 3.773 4 H -0.017 1.017 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.673 5.673 14 C 0.143 3.857 15 C 0.285 3.715 16 N -0.561 5.561 17 C 0.192 3.808 18 N -0.346 5.346 19 N -0.379 5.379 20 C 0.085 3.915 21 H 0.031 0.969 22 H 0.035 0.965 23 H 0.047 0.953 24 H 0.025 0.975 25 H 0.062 0.938 26 H 0.262 0.738 27 H 0.332 0.668 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.249 0.751 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 5.629 9.372 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C 0.119 3.881 4 H 0.001 0.999 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.305 5.305 14 C 0.011 3.989 15 C 0.008 3.992 16 N -0.290 5.290 17 C -0.110 4.110 18 N -0.175 5.175 19 N -0.170 5.170 20 C -0.056 4.056 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.265 0.735 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.039 5.428 9.774 11.229 hybrid contribution 0.584 0.810 -1.319 1.655 sum 1.623 6.238 8.455 10.632 Atomic orbital electron populations 1.21313 0.96446 0.98279 1.00583 1.21359 0.95959 0.97803 0.98921 1.18966 0.91654 0.91848 0.85643 0.99913 1.21362 1.31681 1.12124 0.91228 0.92598 1.25521 0.95173 0.95567 1.01416 1.69987 1.37334 1.23653 1.24163 0.85740 0.78618 0.78842 0.79181 1.19605 1.21242 1.20203 1.60619 1.48873 1.15867 1.05150 1.20403 0.94397 0.98702 0.85388 1.24376 0.93076 0.85033 0.96710 1.70486 1.19676 1.32701 1.06152 1.26635 0.98517 0.85989 0.99880 1.77918 1.14023 1.24650 1.00925 1.50510 1.34281 1.12137 1.20081 1.22292 0.91217 0.95786 0.96292 0.94994 0.94613 0.93425 0.95677 0.91983 0.92918 0.85082 0.88703 0.92124 0.73540 0.89332 0.87245 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.52 71.98 0.69 -4.11 16 2 C -0.10 -4.75 5.59 30.59 0.17 -4.58 16 3 C 0.23 10.55 2.30 44.17 0.10 10.65 16 4 H -0.02 -0.83 7.71 -2.39 -0.02 -0.85 16 5 C -0.53 -26.71 7.26 25.60 0.19 -26.52 16 6 H 0.06 2.82 7.60 -2.91 -0.02 2.80 16 7 C 0.02 1.20 5.30 84.65 0.45 1.65 16 8 N -0.91 -49.73 11.32 21.45 0.24 -49.49 16 9 Si 0.95 41.64 29.54 68.60 2.03 43.67 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 13 N -0.67 -26.47 5.64 -499.45 -2.82 -29.29 16 14 C 0.14 4.76 5.86 85.56 0.50 5.26 16 15 C 0.29 9.25 7.45 138.23 1.03 10.28 16 16 N -0.56 -19.11 11.19 -191.78 -2.15 -21.26 16 17 C 0.19 5.46 13.03 180.77 2.36 7.82 16 18 N -0.35 -10.35 12.70 -61.25 -0.78 -11.12 16 19 N -0.38 -10.87 4.04 -359.87 -1.45 -12.32 16 20 C 0.09 1.70 11.33 127.77 1.45 3.14 16 21 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.03 1.69 7.07 -2.39 -0.02 1.67 16 23 H 0.05 2.04 7.74 -2.38 -0.02 2.02 16 24 H 0.02 1.08 7.61 -2.39 -0.02 1.06 16 25 H 0.06 3.25 6.07 -2.38 -0.01 3.23 16 26 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 27 H 0.33 12.84 8.13 -89.69 -0.73 12.11 16 28 H 0.09 3.29 7.61 -2.39 -0.02 3.27 16 29 H 0.06 1.81 6.92 -2.39 -0.02 1.80 16 30 H 0.25 4.70 8.06 -2.91 -0.02 4.68 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.10 1.83 7.10 -2.38 -0.02 1.81 16 Total: -1.00 -61.36 277.75 2.38 -58.98 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.38 Total: 17.25 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 6.93 Total: 3.59 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -6.95 Total: -123.48 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -61.36 2.38 -58.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389357054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.256 kcal (2) G-P(sol) polarization free energy of solvation -61.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds