Wall clock time and date at job start Sun Mar 29 2020 21:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28606 * 124.61610 * 2 1 4 4 C 1.31377 * 108.71311 * 179.97438 * 3 2 1 5 5 C 1.39677 * 105.90580 * 359.97438 * 4 3 2 6 6 C 1.50697 * 127.05024 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 95.00062 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46820 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00070 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00019 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00228 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00068 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46685 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46910 * 120.00333 * 15 13 11 18 18 H 1.48502 * 109.47120 * 240.00671 * 15 13 11 19 19 N 1.28601 * 124.62014 * 180.24254 * 2 1 3 20 20 H 1.08999 * 109.47220 * 90.02856 * 1 2 3 21 21 H 1.09008 * 109.46828 * 210.02937 * 1 2 3 22 22 H 1.08999 * 109.47023 * 330.02123 * 1 2 3 23 23 H 1.08009 * 127.04830 * 179.97438 * 4 3 2 24 24 H 1.09001 * 109.47558 * 335.00225 * 6 5 4 25 25 H 1.08998 * 109.47216 * 214.99887 * 6 5 4 26 26 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 27 27 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 28 28 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 29 29 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 30 30 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 31 31 H 1.08993 * 109.47740 * 299.99810 * 10 9 8 32 32 H 1.09005 * 109.47573 * 59.99976 * 10 9 8 33 33 H 0.97002 * 120.00555 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0584 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6984 0.0015 6 6 4.6619 -1.6063 0.0019 7 7 4.9803 -1.9967 1.3819 8 6 6.1507 -2.8836 1.4213 9 6 6.4503 -3.2684 2.8716 10 6 7.6688 -4.1927 2.9125 11 6 7.9643 -4.5711 4.3410 12 1 7.3447 -4.1908 5.1396 13 6 9.0251 -5.4038 4.6282 14 7 9.7794 -5.8673 3.6557 15 14 9.3910 -5.8735 6.3989 16 1 8.4021 -5.2254 7.2973 17 1 9.3027 -7.3484 6.5480 18 1 10.7587 -5.4205 6.7587 19 7 2.1956 -1.0583 -0.0045 20 1 -0.3633 -0.0005 -1.0276 21 1 -0.3633 -0.8898 0.5143 22 1 -0.3633 0.8902 0.5135 23 1 4.3211 1.3492 0.0003 24 1 5.5130 -1.0822 -0.4329 25 1 4.4446 -2.4975 -0.5869 26 1 4.1846 -2.4274 1.8285 27 1 5.9441 -3.7838 0.8423 28 1 7.0118 -2.3680 0.9965 29 1 6.6567 -2.3685 3.4509 30 1 5.5890 -3.7843 3.2959 31 1 7.4621 -5.0925 2.3333 32 1 8.5304 -3.6772 2.4879 33 1 10.5259 -6.4528 3.8578 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393498584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:43 Heat of formation + Delta-G solvation = 95.361166 kcal Electronic energy + Delta-G solvation = -14364.213952 eV Core-core repulsion = 11848.269713 eV Total energy + Delta-G solvation = -2515.944239 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.60363 -36.62967 -34.23897 -33.25602 -32.51419 -31.12133 -28.53071 -26.47336 -24.62575 -22.42474 -22.20274 -20.91642 -20.00975 -17.41983 -16.93681 -16.28064 -15.53932 -14.88596 -14.58277 -14.47813 -14.13978 -13.51280 -13.23704 -13.18435 -12.43019 -11.99849 -11.84965 -11.46817 -11.21464 -10.88348 -10.81744 -10.54847 -10.47171 -10.33984 -9.66056 -9.43885 -9.19982 -8.99704 -8.31282 -8.16764 -5.96351 -3.98102 1.70562 2.20517 2.35040 3.33905 3.41163 3.45995 3.95584 4.47330 4.57369 4.71418 4.76557 4.85413 4.97515 5.17428 5.39586 5.50012 5.61098 5.81767 5.90993 6.04235 6.13820 6.35377 6.57749 6.75256 6.78316 7.17400 7.32458 7.60895 7.72937 7.87862 8.04543 8.23921 8.48030 9.09423 9.65798 11.15153 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.066113 B = 0.003696 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.417515 B = 7573.053859 C = 7744.897679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.164 5.164 3 N -0.296 5.296 4 C -0.008 4.008 5 C 0.013 3.987 6 C 0.146 3.854 7 N -0.686 5.686 8 C 0.059 3.941 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 N -0.288 5.288 20 H 0.086 0.914 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.198 0.802 24 H 0.094 0.906 25 H 0.045 0.955 26 H 0.341 0.659 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.014 0.986 32 H 0.017 0.983 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.969 11.181 -9.163 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.064 5.064 3 N -0.137 5.137 4 C -0.191 4.191 5 C -0.150 4.150 6 C 0.015 3.985 7 N -0.318 5.318 8 C -0.069 4.069 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 N -0.131 5.131 20 H 0.105 0.895 21 H 0.120 0.880 22 H 0.119 0.881 23 H 0.215 0.785 24 H 0.112 0.888 25 H 0.063 0.937 26 H 0.158 0.842 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.035 0.965 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.880 11.652 -9.083 22.431 hybrid contribution 0.761 -1.109 0.603 1.474 sum -16.118 10.543 -8.479 21.044 Atomic orbital electron populations 1.22069 0.70521 1.05751 1.04656 1.47865 1.08740 0.99447 1.50391 1.74034 1.04090 1.16046 1.19568 1.24648 0.94239 0.94818 1.05389 1.23156 0.92206 0.94443 1.05237 1.20120 0.91272 0.95548 0.91560 1.60592 1.09058 1.47285 1.14879 1.22159 0.91831 0.93294 0.99611 1.21625 1.00097 1.00088 0.92714 1.19073 0.91738 0.93822 0.96976 1.21308 1.12796 1.28485 0.93006 0.92624 1.25033 0.96240 0.96188 0.97111 1.69976 1.18354 1.33965 1.31348 0.86545 0.78152 0.78146 0.85218 1.19731 1.21081 1.21021 1.74003 1.03828 1.15703 1.19533 0.89520 0.88033 0.88067 0.78506 0.88800 0.93685 0.84190 0.95500 0.91121 0.92492 0.93677 0.96756 0.96488 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.69 11.57 59.85 0.69 1.39 16 2 N -0.16 -1.93 4.35 -16.63 -0.07 -2.00 16 3 N -0.30 -3.75 12.05 30.68 0.37 -3.38 16 4 C -0.01 -0.10 12.16 -17.21 -0.21 -0.31 16 5 C 0.01 0.17 6.87 -82.25 -0.56 -0.40 16 6 C 0.15 1.86 6.27 -4.97 -0.03 1.83 16 7 N -0.69 -10.38 6.49 -115.05 -0.75 -11.13 16 8 C 0.06 1.02 5.69 -3.82 -0.02 1.00 16 9 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 11 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 15 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 19 N -0.29 -3.88 12.05 33.71 0.41 -3.48 16 20 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 22 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.20 1.81 8.06 -52.48 -0.42 1.38 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.34 5.20 8.72 -39.29 -0.34 4.86 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 288.99 15.07 4.35 4.35 Total: -1.00 -33.41 288.99 -5.76 -39.17 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.96 Total: -1.73 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -0.83 Total: -12.20 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.69 Total: -46.52 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.41 -5.76 -39.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393498584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.535 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds