Wall clock time and date at job start Sun Mar 29 2020 21:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46993 * 2 1 4 4 C 1.35307 * 125.86774 * 125.00108 * 3 2 1 5 5 C 1.35350 * 106.17738 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.75487 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46867 * 95.01392 * 6 5 4 8 8 C 1.46899 * 110.99762 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47335 * 325.00024 * 8 7 6 10 10 C 1.53001 * 109.47319 * 84.99995 * 8 7 6 11 11 C 1.50702 * 109.47368 * 205.00082 * 8 7 6 12 12 H 1.07996 * 119.99942 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99917 * 180.02562 * 11 8 7 14 14 N 1.31508 * 120.00345 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99852 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.47100 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47453 * 119.99805 * 15 13 11 18 18 H 1.48497 * 109.47006 * 239.99876 * 15 13 11 19 19 N 1.33771 * 106.49501 * 359.97438 * 5 4 3 20 20 N 1.28634 * 108.88748 * 0.02562 * 19 5 4 21 21 H 1.09001 * 109.46943 * 300.00237 * 1 2 3 22 22 H 1.08997 * 109.46837 * 59.99970 * 1 2 3 23 23 H 1.09001 * 109.46880 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47280 * 240.00120 * 2 1 3 25 25 H 1.08996 * 109.47111 * 119.99557 * 2 1 3 26 26 H 1.08003 * 126.91448 * 359.97115 * 4 3 2 27 27 H 1.08994 * 109.46952 * 215.01499 * 6 5 4 28 28 H 1.08994 * 109.46741 * 335.01328 * 6 5 4 29 29 H 1.00893 * 111.00436 * 303.95294 * 7 6 5 30 30 H 1.08993 * 109.47742 * 179.97438 * 10 8 7 31 31 H 1.09000 * 109.47084 * 300.00470 * 10 8 7 32 32 H 1.09003 * 109.46893 * 59.99758 * 10 8 7 33 33 H 0.96998 * 120.00299 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8756 1.9191 0.8982 5 6 3.0533 3.2079 0.5249 6 6 3.9218 4.2329 1.2077 7 7 5.2375 4.2723 0.5557 8 6 6.1128 5.2632 1.1959 9 1 5.5178 6.1156 1.5239 10 6 6.8037 4.6283 2.4045 11 6 7.1530 5.7268 0.2089 12 1 7.1632 5.3251 -0.7935 13 6 8.0924 6.6629 0.5861 14 7 8.0804 7.1516 1.8069 15 14 9.3814 7.2381 -0.6376 16 1 9.1796 6.5412 -1.9333 17 1 9.2542 8.7039 -0.8383 18 1 10.7353 6.9258 -0.1138 19 7 2.3063 3.3929 -0.5693 20 7 1.7055 2.2918 -0.8543 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.3266 1.4206 1.7435 27 1 3.4512 5.2135 1.1360 28 1 4.0440 3.9645 2.2570 29 1 5.6667 3.3592 0.5520 30 1 7.4535 5.3633 2.8792 31 1 6.0513 4.2930 3.1183 32 1 7.3987 3.7759 2.0765 33 1 8.7411 7.8105 2.0721 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404487800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:18 Heat of formation + Delta-G solvation = 95.702675 kcal Electronic energy + Delta-G solvation = -14953.429368 eV Core-core repulsion = 12437.499938 eV Total energy + Delta-G solvation = -2515.929430 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.01941 -36.29594 -35.29187 -32.81160 -31.01351 -30.79772 -28.20962 -25.18091 -24.71601 -24.47359 -21.60531 -20.52559 -20.14729 -17.36984 -16.33554 -16.22814 -14.92415 -14.74914 -14.54536 -14.22881 -13.66336 -13.26378 -12.95887 -12.58876 -12.39176 -11.86860 -11.65123 -11.47919 -11.35811 -10.90948 -10.75114 -10.59780 -10.32186 -10.10467 -9.94839 -9.81238 -9.01661 -8.89396 -8.31437 -7.18010 -5.93516 -3.95946 1.76351 2.40940 2.83866 3.36383 3.43978 3.50613 4.22544 4.50130 4.52561 4.61857 4.77217 5.06430 5.19050 5.29054 5.32834 5.38440 5.63812 5.67257 5.80037 6.13793 6.31352 6.50484 6.70978 6.72263 6.85623 7.11076 7.39191 7.76930 7.94317 8.31178 8.57838 8.65388 8.78662 9.11906 9.69249 11.13690 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.059674 B = 0.004999 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.099710 B = 5600.287149 C = 5797.088644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 N -0.298 5.298 4 C -0.058 4.058 5 C 0.003 3.997 6 C 0.142 3.858 7 N -0.676 5.676 8 C 0.210 3.790 9 H 0.037 0.963 10 C -0.169 4.169 11 C -0.491 4.491 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.287 1.287 19 N -0.250 5.250 20 N -0.095 5.095 21 H 0.063 0.937 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.186 0.814 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.324 0.676 30 H 0.090 0.910 31 H 0.005 0.995 32 H 0.027 0.973 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 -14.971 1.488 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.007 4.007 3 N -0.093 5.093 4 C -0.208 4.208 5 C -0.135 4.135 6 C 0.010 3.990 7 N -0.306 5.306 8 C 0.103 3.897 9 H 0.054 0.946 10 C -0.228 4.228 11 C -0.530 4.530 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.213 1.213 19 N -0.117 5.117 20 N -0.074 5.074 21 H 0.082 0.918 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.203 0.797 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.141 0.859 30 H 0.108 0.892 31 H 0.024 0.976 32 H 0.046 0.954 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.488 -14.093 -0.177 18.831 hybrid contribution 1.608 -0.622 1.306 2.163 sum -10.879 -14.715 1.129 18.335 Atomic orbital electron populations 1.22073 0.92930 1.03402 1.04050 1.22007 0.96720 0.77045 1.04974 1.47378 1.31045 1.11751 1.19092 1.23391 1.01152 0.95996 1.00303 1.22214 1.01136 0.94409 0.95753 1.20143 0.90034 0.95596 0.93210 1.60765 1.02081 1.10993 1.56734 1.19218 0.90390 0.89334 0.90750 0.94558 1.22443 1.00132 1.00780 0.99492 1.21204 1.11552 1.22148 0.98133 0.91860 1.24938 0.97858 0.96422 0.95350 1.69886 1.36206 1.30323 1.17492 0.86451 0.81095 0.78435 0.81494 1.19731 1.21123 1.21293 1.75105 1.08255 1.15336 1.13029 1.78239 1.21238 0.93076 1.14843 0.91796 0.90660 0.90137 0.88538 0.87931 0.79726 0.89854 0.94533 0.85943 0.89173 0.97579 0.95364 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.04 37.16 0.37 -0.71 16 2 C 0.11 0.83 7.18 -4.04 -0.03 0.80 16 3 N -0.30 -3.81 3.44 -61.26 -0.21 -4.02 16 4 C -0.06 -0.77 11.50 -17.05 -0.20 -0.97 16 5 C 0.00 0.06 6.76 -82.78 -0.56 -0.50 16 6 C 0.14 2.65 6.05 -4.98 -0.03 2.62 16 7 N -0.68 -14.89 6.22 -109.22 -0.68 -15.57 16 8 C 0.21 5.35 2.57 -68.86 -0.18 5.17 16 9 H 0.04 1.01 7.80 -51.93 -0.40 0.60 16 10 C -0.17 -4.00 8.94 37.16 0.33 -3.67 16 11 C -0.49 -13.91 8.84 -34.44 -0.30 -14.21 16 12 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 13 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 14 N -0.90 -25.92 11.32 55.43 0.63 -25.29 16 15 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 N -0.25 -4.86 12.41 33.29 0.41 -4.44 16 20 N -0.09 -1.58 12.91 60.35 0.78 -0.80 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 23 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.10 0.46 8.07 -51.93 -0.42 0.04 16 26 H 0.19 1.76 8.06 -52.48 -0.42 1.34 16 27 H 0.08 1.66 8.05 -51.93 -0.42 1.24 16 28 H 0.04 0.62 7.44 -51.93 -0.39 0.23 16 29 H 0.32 6.73 8.46 -39.30 -0.33 6.39 16 30 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 31 H 0.01 0.11 7.45 -51.93 -0.39 -0.28 16 32 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 282.53 15.07 4.26 4.26 Total: -1.00 -32.70 282.53 -5.26 -37.96 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.74 Total: 1.04 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -0.69 Total: -10.03 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.93 Total: -50.13 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.70 -5.26 -37.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404487800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.662 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds