Wall clock time and date at job start Sun Mar 29 2020 21:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46993 * 2 1 4 4 C 1.35307 * 125.86774 * 125.00108 * 3 2 1 5 5 C 1.35350 * 106.17738 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.75487 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46867 * 95.01392 * 6 5 4 8 8 C 1.46899 * 110.99762 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47335 * 325.00024 * 8 7 6 10 10 C 1.53001 * 109.47319 * 84.99995 * 8 7 6 11 11 C 1.50702 * 109.47368 * 205.00082 * 8 7 6 12 12 H 1.07996 * 119.99942 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99917 * 180.02562 * 11 8 7 14 14 N 1.31508 * 120.00345 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99852 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.47100 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47453 * 119.99805 * 15 13 11 18 18 H 1.48497 * 109.47006 * 239.99876 * 15 13 11 19 19 N 1.33771 * 106.49501 * 359.97438 * 5 4 3 20 20 N 1.28634 * 108.88748 * 0.02562 * 19 5 4 21 21 H 1.09001 * 109.46943 * 300.00237 * 1 2 3 22 22 H 1.08997 * 109.46837 * 59.99970 * 1 2 3 23 23 H 1.09001 * 109.46880 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47280 * 240.00120 * 2 1 3 25 25 H 1.08996 * 109.47111 * 119.99557 * 2 1 3 26 26 H 1.08003 * 126.91448 * 359.97115 * 4 3 2 27 27 H 1.08994 * 109.46952 * 215.01499 * 6 5 4 28 28 H 1.08994 * 109.46741 * 335.01328 * 6 5 4 29 29 H 1.00893 * 111.00436 * 303.95294 * 7 6 5 30 30 H 1.08993 * 109.47742 * 179.97438 * 10 8 7 31 31 H 1.09000 * 109.47084 * 300.00470 * 10 8 7 32 32 H 1.09003 * 109.46893 * 59.99758 * 10 8 7 33 33 H 0.96998 * 120.00299 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8756 1.9191 0.8982 5 6 3.0533 3.2079 0.5249 6 6 3.9218 4.2329 1.2077 7 7 5.2375 4.2723 0.5557 8 6 6.1128 5.2632 1.1959 9 1 5.5178 6.1156 1.5239 10 6 6.8037 4.6283 2.4045 11 6 7.1530 5.7268 0.2089 12 1 7.1632 5.3251 -0.7935 13 6 8.0924 6.6629 0.5861 14 7 8.0804 7.1516 1.8069 15 14 9.3814 7.2381 -0.6376 16 1 9.1796 6.5412 -1.9333 17 1 9.2542 8.7039 -0.8383 18 1 10.7353 6.9258 -0.1138 19 7 2.3063 3.3929 -0.5693 20 7 1.7055 2.2918 -0.8543 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.3266 1.4206 1.7435 27 1 3.4512 5.2135 1.1360 28 1 4.0440 3.9645 2.2570 29 1 5.6667 3.3592 0.5520 30 1 7.4535 5.3633 2.8792 31 1 6.0513 4.2930 3.1183 32 1 7.3987 3.7759 2.0765 33 1 8.7411 7.8105 2.0721 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404487800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:18 Heat of formation + Delta-G solvation = 71.468405 kcal Electronic energy + Delta-G solvation = -14954.480245 eV Core-core repulsion = 12437.499938 eV Total energy + Delta-G solvation = -2516.980307 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.16014 -37.97524 -36.32409 -34.67485 -32.54904 -31.67298 -29.87843 -27.21762 -26.09103 -25.49185 -22.72222 -22.09562 -21.65013 -18.59675 -18.01208 -17.36388 -16.74912 -16.11074 -15.65927 -15.55862 -15.02990 -14.83719 -14.28226 -13.70413 -13.44939 -13.35475 -13.05229 -12.88031 -12.77861 -12.55176 -12.40005 -12.26895 -12.12609 -11.88796 -11.59034 -11.03957 -10.93659 -10.46004 -10.16425 -8.91445 -8.07346 -6.17784 0.69584 1.42642 1.44653 1.52127 1.57569 1.59079 2.46774 3.20823 3.38869 3.69344 3.82857 4.00588 4.09950 4.23634 4.31711 4.47448 4.66501 4.76830 4.77232 4.86578 4.94750 5.04074 5.12483 5.16294 5.29205 5.47028 5.73548 5.77999 5.86807 6.31173 6.67522 6.85151 6.97513 7.52013 7.59518 8.98063 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.059674 B = 0.004999 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.099710 B = 5600.287149 C = 5797.088644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.284 5.284 4 C -0.029 4.029 5 C -0.030 4.030 6 C 0.150 3.850 7 N -0.686 5.686 8 C 0.215 3.785 9 H 0.004 0.996 10 C -0.154 4.154 11 C -0.515 4.515 12 H 0.048 0.952 13 C 0.011 3.989 14 N -0.920 5.920 15 Si 0.958 3.042 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.277 1.277 19 N -0.302 5.302 20 N -0.118 5.118 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.143 0.857 26 H 0.232 0.768 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.333 0.667 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.481 -17.351 2.125 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.079 5.079 4 C -0.181 4.181 5 C -0.169 4.169 6 C 0.019 3.981 7 N -0.317 5.317 8 C 0.107 3.893 9 H 0.022 0.978 10 C -0.214 4.214 11 C -0.554 4.554 12 H 0.067 0.933 13 C -0.187 4.187 14 N -0.561 5.561 15 Si 0.784 3.216 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.202 1.202 19 N -0.168 5.168 20 N -0.097 5.097 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.131 0.869 24 H 0.128 0.872 25 H 0.161 0.839 26 H 0.248 0.752 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.150 0.850 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.459 -16.504 0.443 20.683 hybrid contribution 1.500 0.009 1.127 1.876 sum -10.959 -16.495 1.571 19.866 Atomic orbital electron populations 1.22065 0.92429 1.05021 1.02549 1.22614 0.97207 0.74336 1.07676 1.47870 1.29639 1.12887 1.17535 1.23920 0.99393 0.94450 1.00371 1.22092 1.02348 0.95988 0.96474 1.19976 0.88325 0.95353 0.94436 1.60563 1.02917 1.10795 1.57420 1.18972 0.89943 0.89416 0.90982 0.97791 1.22214 1.00206 0.99935 0.99030 1.21474 1.12856 1.22922 0.98164 0.93343 1.25658 0.99651 0.96421 0.97005 1.69998 1.36820 1.30521 1.18746 0.85501 0.78944 0.77839 0.79272 1.19800 1.20786 1.20215 1.75031 1.09882 1.17243 1.14686 1.78136 1.21960 0.93396 1.16227 0.92522 0.92928 0.86922 0.87186 0.83896 0.75180 0.92272 0.92124 0.84978 0.92002 0.94669 0.94720 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 10.04 71.98 0.72 -0.95 16 2 C 0.10 1.09 7.18 86.38 0.62 1.71 16 3 N -0.28 -6.57 3.44 -347.72 -1.20 -7.77 16 4 C -0.03 -0.69 11.50 83.49 0.96 0.27 16 5 C -0.03 -1.00 6.76 41.60 0.28 -0.72 16 6 C 0.15 5.59 6.05 85.56 0.52 6.11 16 7 N -0.69 -30.26 6.22 -499.47 -3.11 -33.37 16 8 C 0.22 11.07 2.57 44.17 0.11 11.18 16 9 H 0.00 0.24 7.80 -2.39 -0.02 0.22 16 10 C -0.15 -7.20 8.94 71.98 0.64 -6.55 16 11 C -0.52 -29.60 8.84 25.60 0.23 -29.38 16 12 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 13 C 0.01 0.61 5.30 84.66 0.45 1.06 16 14 N -0.92 -53.48 11.32 21.45 0.24 -53.24 16 15 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 16 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 N -0.30 -11.86 12.41 -48.60 -0.60 -12.47 16 20 N -0.12 -3.89 12.91 37.02 0.48 -3.42 16 21 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 22 H 0.05 0.79 8.12 -2.39 -0.02 0.77 16 23 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.14 0.47 8.07 -2.39 -0.02 0.45 16 26 H 0.23 3.11 8.06 -2.91 -0.02 3.09 16 27 H 0.06 2.44 8.05 -2.39 -0.02 2.42 16 28 H 0.06 1.94 7.44 -2.39 -0.02 1.93 16 29 H 0.33 13.50 8.46 -89.70 -0.76 12.74 16 30 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 31 H 0.03 1.39 7.45 -2.39 -0.02 1.37 16 32 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16 33 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -73.12 282.53 2.72 -70.41 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.34 Total: 9.96 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 4.53 Total: -17.28 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -4.18 Total: -110.26 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -73.12 2.72 -70.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404487800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.875 kcal (2) G-P(sol) polarization free energy of solvation -73.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds