Wall clock time and date at job start Sun Mar 29 2020 21:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46906 * 2 1 4 4 C 1.50702 * 109.47004 * 119.99533 * 2 1 3 5 5 N 1.30714 * 125.53065 * 299.69910 * 4 2 1 6 6 N 1.40441 * 106.79459 * 179.85966 * 5 4 2 7 7 H 0.96999 * 126.82540 * 180.15566 * 6 5 4 8 8 C 1.34432 * 106.35365 * 0.39367 * 6 5 4 9 9 C 1.50697 * 125.96200 * 179.78236 * 8 6 5 10 10 N 1.46497 * 109.47473 * 94.97569 * 9 8 6 11 11 C 1.46497 * 120.00097 * 89.99888 * 10 9 8 12 12 C 1.36936 * 120.00064 * 270.00371 * 10 9 8 13 13 H 1.07995 * 120.00341 * 142.03529 * 12 10 9 14 14 C 1.38818 * 119.99822 * 322.03615 * 12 10 9 15 15 N 1.31617 * 119.99945 * 157.02471 * 14 12 10 16 16 Si 1.86801 * 119.99869 * 337.02545 * 14 12 10 17 17 H 1.48502 * 109.47077 * 95.68385 * 16 14 12 18 18 H 1.48501 * 109.46959 * 215.68184 * 16 14 12 19 19 H 1.48500 * 109.47110 * 335.68236 * 16 14 12 20 20 N 1.30833 * 108.07774 * 359.76041 * 8 6 5 21 21 H 1.09001 * 109.47030 * 60.00226 * 1 2 3 22 22 H 1.09009 * 109.46958 * 300.00332 * 1 2 3 23 23 H 1.09000 * 109.47430 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47122 * 239.99543 * 2 1 3 25 25 H 1.09001 * 109.47360 * 60.00238 * 3 2 1 26 26 H 1.09003 * 109.46663 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47092 * 299.99736 * 3 2 1 28 28 H 1.09003 * 109.47220 * 214.97836 * 9 8 6 29 29 H 1.09000 * 109.46958 * 334.97242 * 9 8 6 30 30 H 1.08995 * 109.47323 * 85.65719 * 11 10 9 31 31 H 1.09002 * 109.47292 * 205.66423 * 11 10 9 32 32 H 1.09007 * 109.47377 * 325.65802 * 11 10 9 33 33 H 0.97000 * 119.99983 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7886 -0.3559 2.4649 6 7 2.4399 -1.2868 3.2905 7 1 2.4480 -1.2982 4.2604 8 6 3.0545 -2.1560 2.4695 9 6 3.8888 -3.3367 2.8949 10 7 3.0550 -4.5410 2.9174 11 6 2.9342 -5.3709 1.7162 12 6 2.3886 -4.8911 4.0613 13 1 1.3948 -5.3094 4.0007 14 6 2.9904 -4.7082 5.2988 15 7 2.2497 -4.6022 6.3816 16 14 4.8515 -4.6126 5.4272 17 1 5.2756 -3.1895 5.4230 18 1 5.2943 -5.2573 6.6896 19 1 5.4642 -5.3151 4.2712 20 7 2.8016 -1.7983 1.2367 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.6767 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 4.7084 -3.4753 2.1898 29 1 4.2930 -3.1559 3.8909 30 1 3.7596 -6.0819 1.6813 31 1 1.9887 -5.9126 1.7424 32 1 2.9644 -4.7355 0.8310 33 1 2.6702 -4.4747 7.2463 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589984499.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:25 Heat of formation + Delta-G solvation = 75.473756 kcal Electronic energy + Delta-G solvation = -15629.811776 eV Core-core repulsion = 13113.005154 eV Total energy + Delta-G solvation = -2516.806622 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.04694 -37.93827 -36.50067 -33.94018 -33.04670 -32.01010 -28.66784 -28.03223 -27.86499 -24.66516 -23.48584 -21.96614 -20.50228 -19.31695 -18.56305 -17.26475 -16.62846 -15.88788 -15.78622 -15.62691 -15.06618 -14.84320 -14.46874 -13.93720 -13.83587 -13.44777 -13.03055 -12.86278 -12.64216 -12.54600 -12.40212 -12.17079 -12.10393 -11.88908 -11.71087 -10.99593 -10.96704 -10.75999 -10.43618 -8.99563 -8.29393 -5.72784 0.66873 1.26329 1.43210 1.53855 1.76378 1.92307 2.33836 2.94390 3.08848 3.36689 3.65755 3.91891 4.08450 4.22547 4.38102 4.49965 4.55797 4.72192 4.80768 4.92747 4.95738 5.01379 5.04751 5.11770 5.33686 5.34124 5.35949 5.62730 5.80941 6.08258 6.13868 6.79974 7.19186 7.44717 7.88448 8.89043 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039207 B = 0.007916 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.994247 B = 3536.427696 C = 3667.577669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.000 4.000 3 C -0.133 4.133 4 C 0.216 3.784 5 N -0.345 5.345 6 N -0.478 5.478 7 H 0.442 0.558 8 C 0.282 3.718 9 C 0.203 3.797 10 N -0.604 5.604 11 C 0.123 3.877 12 C -0.276 4.276 13 H 0.037 0.963 14 C -0.008 4.008 15 N -0.935 5.935 16 Si 0.932 3.068 17 H -0.263 1.263 18 H -0.302 1.302 19 H -0.249 1.249 20 N -0.561 5.561 21 H 0.097 0.903 22 H 0.049 0.951 23 H 0.040 0.960 24 H 0.104 0.896 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.968 8.706 -11.578 14.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.021 4.021 3 C -0.191 4.191 4 C -0.067 4.067 5 N -0.175 5.175 6 N -0.195 5.195 7 H 0.287 0.713 8 C 0.001 3.999 9 C 0.074 3.926 10 N -0.327 5.327 11 C -0.021 4.021 12 C -0.405 4.405 13 H 0.054 0.946 14 C -0.207 4.207 15 N -0.577 5.577 16 Si 0.758 3.242 17 H -0.190 1.190 18 H -0.230 1.230 19 H -0.173 1.173 20 N -0.291 5.291 21 H 0.116 0.884 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.122 0.878 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.128 0.872 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.633 9.115 -11.558 14.953 hybrid contribution 0.451 -0.448 1.628 1.748 sum 3.084 8.667 -9.930 13.536 Atomic orbital electron populations 1.21779 0.92662 1.01616 1.03326 1.19710 0.96572 0.95844 0.90023 1.21761 1.00808 0.93195 1.03315 1.24992 0.94735 0.92502 0.94452 1.77739 1.21922 1.15142 1.02702 1.48068 1.39254 1.21426 1.10719 0.71286 1.26214 0.94819 0.92817 0.86069 1.20155 0.91477 0.80395 1.00592 1.44086 1.56677 1.21508 1.10476 1.21241 0.99501 0.93913 0.87396 1.18620 0.96827 1.40928 0.84164 0.94572 1.26082 1.01973 0.98017 0.94594 1.70008 1.37277 1.50738 0.99688 0.86031 0.81952 0.78601 0.77587 1.18972 1.22975 1.17285 1.70363 1.22077 1.15962 1.20735 0.88396 0.93187 0.94102 0.87810 0.93073 0.93141 0.88631 0.87224 0.91520 0.94747 0.94312 0.92689 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.18 71.98 0.66 -2.51 16 2 C 0.00 -0.01 3.39 -11.54 -0.04 -0.05 16 3 C -0.13 -2.80 9.18 71.98 0.66 -2.14 16 4 C 0.22 7.86 6.65 138.63 0.92 8.78 16 5 N -0.35 -13.57 12.80 -51.33 -0.66 -14.23 16 6 N -0.48 -19.58 7.45 -50.71 -0.38 -19.96 16 7 H 0.44 17.36 8.96 -213.10 -1.91 15.45 16 8 C 0.28 11.63 7.82 138.22 1.08 12.71 16 9 C 0.20 8.24 5.15 85.63 0.44 8.68 16 10 N -0.60 -27.60 2.45 -731.32 -1.79 -29.40 16 11 C 0.12 4.78 10.70 127.77 1.37 6.15 16 12 C -0.28 -15.02 9.88 84.04 0.83 -14.19 16 13 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 14 C -0.01 -0.45 5.29 84.86 0.45 0.00 16 15 N -0.94 -54.77 13.97 21.65 0.30 -54.46 16 16 Si 0.93 41.41 25.10 68.60 1.72 43.13 16 17 H -0.26 -10.73 6.68 99.48 0.66 -10.07 16 18 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 20 N -0.56 -22.31 11.19 -179.72 -2.01 -24.32 16 21 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.11 3.81 8.07 -2.39 -0.02 3.79 16 29 H 0.07 2.78 3.38 -2.39 -0.01 2.77 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.53 8.00 -2.39 -0.02 1.51 16 32 H 0.05 1.95 8.11 -2.38 -0.02 1.94 16 33 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -64.60 279.11 2.71 -61.89 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.85 Total: 19.92 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 6.37 Total: 17.43 kcal Atomic # 7 Polarization: -137.84 SS G_CDS: -4.54 Total: -142.37 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.72 Total: 43.13 kcal Total: -64.60 2.71 -61.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589984499.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.366 kcal (2) G-P(sol) polarization free energy of solvation -64.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds