Wall clock time and date at job start Sun Mar 29 2020 21:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47147 * 90.00197 * 8 6 4 10 10 H 1.48499 * 109.46797 * 209.99607 * 8 6 4 11 11 H 1.48500 * 109.47032 * 329.99738 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46899 * 110.99825 * 183.95539 * 12 2 1 14 14 C 1.46899 * 111.00167 * 60.00559 * 12 2 1 15 15 C 1.52996 * 109.47221 * 189.99851 * 14 12 2 16 16 C 1.50708 * 109.47082 * 179.97438 * 15 14 12 17 17 C 1.35349 * 126.90811 * 274.68425 * 16 15 14 18 18 N 1.33773 * 106.49308 * 179.90611 * 17 16 15 19 19 N 1.28630 * 108.88811 * 0.36464 * 18 17 16 20 20 N 1.28722 * 110.17849 * 359.77098 * 19 18 17 21 21 H 0.96994 * 125.87084 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 24 24 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47534 * 60.00147 * 13 12 2 27 27 H 1.08998 * 109.47337 * 180.02562 * 13 12 2 28 28 H 1.09007 * 109.47493 * 300.00068 * 13 12 2 29 29 H 1.09005 * 109.46935 * 309.99882 * 14 12 2 30 30 H 1.09005 * 109.47207 * 69.99057 * 14 12 2 31 31 H 1.08994 * 109.47009 * 299.99169 * 15 14 12 32 32 H 1.08997 * 109.47162 * 59.99831 * 15 14 12 33 33 H 1.08000 * 126.75418 * 0.03758 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4857 -2.5663 3.7119 12 7 2.0196 -0.6926 -1.1994 13 6 3.4850 -0.7947 -1.1871 14 6 1.5487 -0.0265 -2.4211 15 6 1.8626 -0.9044 -3.6341 16 6 1.3789 -0.2213 -4.8874 17 6 0.1316 -0.2713 -5.4106 18 7 0.1540 0.4791 -6.5179 19 7 1.3386 0.9554 -6.6742 20 7 2.1056 0.5605 -5.7189 21 1 3.0432 0.7851 -5.6131 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7090 1.1614 3.4844 26 1 3.8029 -1.3533 -0.3068 27 1 3.8209 -1.3110 -2.0863 28 1 3.9187 0.2050 -1.1592 29 1 0.4722 0.1324 -2.3564 30 1 2.0519 0.9345 -2.5280 31 1 2.9390 -1.0632 -3.6988 32 1 1.3593 -1.8653 -3.5271 33 1 -0.7156 -0.8092 -5.0115 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590603883.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:29 Heat of formation + Delta-G solvation = 73.569127 kcal Electronic energy + Delta-G solvation = -15280.865259 eV Core-core repulsion = 12763.976047 eV Total energy + Delta-G solvation = -2516.889213 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.26860 -38.98664 -35.45790 -34.38773 -33.65720 -31.19350 -29.77921 -27.43156 -26.01494 -24.17088 -23.80039 -22.41350 -21.08056 -19.18389 -18.33641 -17.08376 -17.05519 -16.13336 -15.99666 -15.32303 -15.22031 -14.61718 -14.37902 -14.00232 -13.60124 -12.99026 -12.91920 -12.73195 -12.67485 -12.50997 -12.25590 -12.02299 -11.93450 -11.81423 -11.62002 -11.41127 -10.84413 -10.49872 -10.11326 -8.94158 -8.09731 -6.21419 0.57488 1.43890 1.45838 1.54390 1.55900 1.88194 2.44050 3.18420 3.28191 3.65680 3.88831 4.05395 4.22276 4.36626 4.49375 4.58761 4.65624 4.77674 4.94206 5.02169 5.10064 5.13377 5.14532 5.24567 5.34815 5.53830 5.74813 5.82239 5.99765 6.28423 6.39389 6.74447 6.94065 7.42987 7.48232 8.96277 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.062277 B = 0.005466 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.495317 B = 5121.028444 C = 5350.455623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.215 3.785 3 H -0.041 1.041 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.266 1.266 12 N -0.539 5.539 13 C 0.034 3.966 14 C 0.057 3.943 15 C -0.031 4.031 16 C 0.012 3.988 17 C -0.057 4.057 18 N -0.301 5.301 19 N -0.112 5.112 20 N -0.376 5.376 21 H 0.461 0.539 22 H 0.056 0.944 23 H 0.031 0.969 24 H 0.036 0.964 25 H 0.260 0.740 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.003 0.997 29 H 0.072 0.928 30 H 0.013 0.987 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.881 -3.779 -11.252 12.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.108 3.892 3 H -0.024 1.024 4 C -0.555 4.555 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.190 1.190 12 N -0.263 5.263 13 C -0.114 4.114 14 C -0.072 4.072 15 C -0.070 4.070 16 C -0.123 4.123 17 C -0.214 4.214 18 N -0.167 5.167 19 N -0.092 5.092 20 N -0.099 5.099 21 H 0.309 0.691 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.022 0.978 29 H 0.090 0.910 30 H 0.032 0.968 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.376 -3.320 -12.458 13.328 hybrid contribution 1.090 0.426 2.108 2.411 sum 4.465 -2.895 -10.350 11.638 Atomic orbital electron populations 1.21682 0.97307 0.99529 0.99622 1.19046 0.92692 0.90023 0.87433 1.02377 1.21463 1.30963 1.12314 0.90804 0.91797 1.25725 0.95408 0.95761 1.02010 1.70034 1.37912 1.24354 1.23974 0.85537 0.77827 0.79243 0.78913 1.20378 1.21232 1.18998 1.62055 1.10463 1.52104 1.01705 1.22311 0.87604 0.98943 1.02513 1.22115 1.00948 0.94365 0.89812 1.20123 1.03174 0.98580 0.85139 1.22452 0.92952 0.99562 0.97383 1.23900 0.98815 1.03943 0.94768 1.75035 1.11912 1.11562 1.18197 1.78184 0.97634 1.21218 1.12144 1.45137 1.14686 1.33192 1.16905 0.69068 0.92540 0.95052 0.94481 0.93063 0.92323 0.89400 0.97814 0.90974 0.96847 0.88456 0.86816 0.77271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.76 71.98 0.63 -5.17 16 2 C 0.22 10.44 2.06 44.17 0.09 10.53 16 3 H -0.04 -2.28 8.14 -2.39 -0.02 -2.30 16 4 C -0.52 -27.25 7.93 25.60 0.20 -27.04 16 5 H 0.06 3.30 6.39 -2.91 -0.02 3.28 16 6 C 0.01 0.50 5.30 84.65 0.45 0.95 16 7 N -0.92 -52.35 11.32 21.45 0.24 -52.10 16 8 Si 0.96 42.43 29.54 68.60 2.03 44.46 16 9 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 N -0.54 -20.40 4.62 -901.46 -4.17 -24.56 16 13 C 0.03 1.15 9.05 127.69 1.16 2.30 16 14 C 0.06 1.71 4.75 86.30 0.41 2.12 16 15 C -0.03 -0.63 5.71 29.85 0.17 -0.46 16 16 C 0.01 0.25 6.56 41.36 0.27 0.53 16 17 C -0.06 -1.36 11.99 83.73 1.00 -0.36 16 18 N -0.30 -8.74 12.41 -58.26 -0.72 -9.47 16 19 N -0.11 -3.02 13.38 37.02 0.50 -2.52 16 20 N -0.38 -7.62 6.98 -47.78 -0.33 -7.96 16 21 H 0.46 5.87 8.96 -219.96 -1.97 3.90 16 22 H 0.06 2.99 6.07 -2.39 -0.01 2.98 16 23 H 0.03 1.29 6.20 -2.39 -0.01 1.27 16 24 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.26 14.11 8.31 -92.71 -0.77 13.33 16 26 H 0.06 2.18 6.23 -2.39 -0.01 2.17 16 27 H 0.09 2.14 6.30 -2.39 -0.02 2.12 16 28 H 0.00 0.11 8.14 -2.38 -0.02 0.10 16 29 H 0.07 2.32 5.83 -2.38 -0.01 2.30 16 30 H 0.01 0.42 8.12 -2.38 -0.02 0.40 16 31 H 0.10 1.62 6.47 -2.39 -0.02 1.61 16 32 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.21 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -64.74 271.21 1.08 -63.67 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -0.85 Total: 5.09 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 4.39 Total: -16.60 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -4.49 Total: -96.61 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -64.74 1.08 -63.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590603883.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.236 kcal (2) G-P(sol) polarization free energy of solvation -64.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds