Wall clock time and date at job start Sun Mar 29 2020 21:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47366 * 207.95424 * 3 2 1 5 5 C 1.52999 * 109.47231 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46697 * 180.02562 * 5 4 3 7 7 C 1.48720 * 111.01831 * 74.48907 * 6 5 4 8 8 C 1.54381 * 104.51692 * 158.96284 * 7 6 5 9 9 C 1.54257 * 105.14978 * 336.27274 * 8 7 6 10 10 O 1.42906 * 110.32239 * 240.94794 * 9 8 7 11 11 C 1.50697 * 110.32628 * 118.84329 * 9 8 7 12 12 H 1.07995 * 120.00073 * 241.44522 * 11 9 8 13 13 C 1.37883 * 119.99811 * 61.45328 * 11 9 8 14 14 N 1.31514 * 119.99933 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99722 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46935 * 90.00162 * 15 13 11 17 17 H 1.48500 * 109.47103 * 209.99421 * 15 13 11 18 18 H 1.48498 * 109.47343 * 330.00155 * 15 13 11 19 19 C 1.48567 * 110.99718 * 189.99889 * 6 5 4 20 20 H 1.09001 * 109.47505 * 87.95420 * 3 2 1 21 21 H 1.09002 * 109.47407 * 327.95657 * 3 2 1 22 22 H 1.09001 * 109.46812 * 59.99571 * 4 3 2 23 23 H 1.08997 * 109.46710 * 300.00130 * 4 3 2 24 24 H 1.08997 * 109.47422 * 59.99616 * 5 4 3 25 25 H 1.08999 * 109.46632 * 299.99620 * 5 4 3 26 26 H 1.09004 * 110.38960 * 40.24251 * 7 6 5 27 27 H 1.08996 * 110.50963 * 277.74694 * 7 6 5 28 28 H 1.09002 * 110.32526 * 217.32092 * 8 7 6 29 29 H 1.08998 * 110.32190 * 95.21733 * 8 7 6 30 30 H 0.96695 * 113.99929 * 298.55053 * 10 9 8 31 31 H 0.97002 * 119.99478 * 180.02562 * 14 13 11 32 32 H 1.08999 * 110.41133 * 82.17552 * 19 6 5 33 33 H 1.09001 * 110.41003 * 319.73948 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.2751 0.6762 5 6 4.6475 1.2760 0.6756 6 7 5.1365 2.4994 1.3254 7 6 4.9649 2.4249 2.8008 8 6 5.9671 3.4576 3.3596 9 6 7.0424 3.6095 2.2641 10 8 8.3231 3.2262 2.7692 11 6 7.0822 5.0302 1.7631 12 1 6.8666 5.2435 0.7266 13 6 7.3941 6.0577 2.6280 14 7 7.6573 5.7979 3.8900 15 14 7.4441 7.8186 2.0067 16 1 6.1006 8.4340 2.1546 17 1 8.4335 8.5944 2.7970 18 1 7.8377 7.8275 0.5749 19 6 6.6016 2.6546 1.1341 20 1 2.9714 -0.0359 -1.0270 21 1 2.9717 -0.8703 0.5452 22 1 2.7540 1.3116 1.7032 23 1 2.7537 2.1459 0.1309 24 1 5.0105 1.2397 -0.3515 25 1 5.0114 0.4051 1.2207 26 1 5.2081 1.4254 3.1614 27 1 3.9463 2.6935 3.0808 28 1 6.4158 3.0890 4.2821 29 1 5.4693 4.4110 3.5362 30 1 8.6307 3.7650 3.5109 31 1 7.8763 6.5209 4.4985 32 1 6.8132 3.0951 0.1598 33 1 7.1021 1.6913 1.2334 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:19 Heat of formation + Delta-G solvation = -29.044654 kcal Electronic energy + Delta-G solvation = -15310.124216 eV Core-core repulsion = 12756.492585 eV Total energy + Delta-G solvation = -2553.631631 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.52309 -37.00733 -35.30870 -33.30306 -32.08053 -29.67454 -28.00112 -26.14693 -24.13831 -21.90937 -20.14752 -19.37015 -17.59965 -17.00607 -15.74496 -15.21161 -14.83651 -14.56547 -14.09148 -13.75516 -13.57250 -12.94564 -12.81384 -12.43803 -12.16742 -11.87745 -11.64742 -11.39926 -11.24729 -10.97996 -10.92161 -10.62716 -10.49447 -10.37318 -10.27108 -9.90581 -9.02674 -8.55210 -8.11479 -7.85342 -6.14929 -4.20352 2.65493 2.69063 3.27461 3.34334 3.38426 3.85852 4.36880 4.50047 4.89779 5.11898 5.16232 5.21701 5.40484 5.52232 5.72297 5.76509 5.92525 6.04535 6.17368 6.21459 6.23947 6.41064 6.51704 6.87541 7.05820 7.22325 7.46098 7.56250 7.66686 7.71256 7.87487 8.23518 8.82214 9.43947 9.52804 10.92598 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039378 B = 0.005980 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.885402 B = 4681.532623 C = 4981.727504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.212 3.788 3 C -0.027 4.027 4 C -0.111 4.111 5 C 0.045 3.955 6 N -0.502 5.502 7 C 0.031 3.969 8 C -0.122 4.122 9 C 0.248 3.752 10 O -0.595 6.595 11 C -0.518 4.518 12 H 0.062 0.938 13 C 0.066 3.934 14 N -0.901 5.901 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.054 3.946 20 H 0.109 0.891 21 H 0.107 0.893 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.382 0.618 31 H 0.265 0.735 32 H 0.077 0.923 33 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.107 -8.670 -4.002 10.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.106 4.106 3 C -0.067 4.067 4 C -0.150 4.150 5 C -0.084 4.084 6 N -0.227 5.227 7 C -0.096 4.096 8 C -0.160 4.160 9 C 0.208 3.792 10 O -0.404 6.404 11 C -0.557 4.557 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.542 5.542 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.074 4.074 20 H 0.127 0.873 21 H 0.125 0.875 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.233 0.767 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.104 -8.592 -4.554 11.481 hybrid contribution 0.861 0.739 0.603 1.285 sum -5.243 -7.852 -3.952 10.236 Atomic orbital electron populations 1.81217 1.13243 1.08904 1.09128 1.29311 0.95419 0.92932 0.92910 1.19336 0.81284 1.01527 1.04571 1.21489 0.96147 0.95826 1.01514 1.22216 0.93916 0.92211 1.00098 1.65287 1.15417 1.32742 1.09227 1.23214 1.00195 0.98112 0.88110 1.22855 0.97026 0.97755 0.98398 1.19265 0.80520 0.91523 0.87912 1.86079 1.37562 1.61802 1.54977 1.21650 1.46510 0.91107 0.96390 0.91972 1.25003 0.94380 0.99421 0.94747 1.69695 1.48019 1.32910 1.03535 0.86481 0.77773 0.84113 0.78936 1.20627 1.21272 1.19829 1.22972 0.85893 0.97934 1.00561 0.87277 0.87527 0.91162 0.90138 0.90789 0.94741 0.95258 0.91607 0.93145 0.90673 0.76736 0.92497 0.90478 0.95066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.25 18.54 42.15 0.78 -5.47 16 2 C 0.21 2.27 15.43 -20.76 -0.32 1.95 16 3 C -0.03 -0.19 5.70 -29.52 -0.17 -0.36 16 4 C -0.11 -1.15 5.28 -26.73 -0.14 -1.29 16 5 C 0.04 0.57 4.83 -3.82 -0.02 0.55 16 6 N -0.50 -9.01 5.34 -229.83 -1.23 -10.24 16 7 C 0.03 0.58 5.93 -2.09 -0.01 0.57 16 8 C -0.12 -2.76 5.55 -25.35 -0.14 -2.90 16 9 C 0.25 6.03 1.05 -90.39 -0.10 5.93 16 10 O -0.60 -15.22 12.94 -35.23 -0.46 -15.68 16 11 C -0.52 -13.79 8.10 -34.44 -0.28 -14.06 16 12 H 0.06 1.67 7.53 -52.49 -0.40 1.27 16 13 C 0.07 1.73 5.02 -17.82 -0.09 1.64 16 14 N -0.90 -23.98 10.81 55.43 0.60 -23.38 16 15 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.05 1.11 5.74 -2.18 -0.01 1.10 16 20 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.07 0.78 7.47 -51.93 -0.39 0.40 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 25 H 0.03 0.41 7.77 -51.93 -0.40 0.01 16 26 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 27 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 28 H 0.05 1.15 7.98 -51.93 -0.41 0.74 16 29 H 0.07 1.88 7.23 -51.93 -0.38 1.51 16 30 H 0.38 9.92 7.32 45.56 0.33 10.26 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.08 1.60 7.67 -51.93 -0.40 1.21 16 33 H 0.03 0.62 7.94 -51.93 -0.41 0.21 16 LS Contribution 278.47 15.07 4.20 4.20 Total: -1.00 -29.30 278.47 -6.49 -35.79 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.09 Total: 5.91 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.28 Total: -6.87 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.15 Total: -39.09 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.46 Total: -15.68 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.30 -6.49 -35.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.749 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds