Wall clock time and date at job start Sun Mar 29 2020 21:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47366 * 207.95424 * 3 2 1 5 5 C 1.52999 * 109.47231 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46697 * 180.02562 * 5 4 3 7 7 C 1.48720 * 111.01831 * 74.48907 * 6 5 4 8 8 C 1.54381 * 104.51692 * 158.96284 * 7 6 5 9 9 C 1.54257 * 105.14978 * 336.27274 * 8 7 6 10 10 O 1.42906 * 110.32239 * 240.94794 * 9 8 7 11 11 C 1.50697 * 110.32628 * 118.84329 * 9 8 7 12 12 H 1.07995 * 120.00073 * 241.44522 * 11 9 8 13 13 C 1.37883 * 119.99811 * 61.45328 * 11 9 8 14 14 N 1.31514 * 119.99933 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99722 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46935 * 90.00162 * 15 13 11 17 17 H 1.48500 * 109.47103 * 209.99421 * 15 13 11 18 18 H 1.48498 * 109.47343 * 330.00155 * 15 13 11 19 19 C 1.48567 * 110.99718 * 189.99889 * 6 5 4 20 20 H 1.09001 * 109.47505 * 87.95420 * 3 2 1 21 21 H 1.09002 * 109.47407 * 327.95657 * 3 2 1 22 22 H 1.09001 * 109.46812 * 59.99571 * 4 3 2 23 23 H 1.08997 * 109.46710 * 300.00130 * 4 3 2 24 24 H 1.08997 * 109.47422 * 59.99616 * 5 4 3 25 25 H 1.08999 * 109.46632 * 299.99620 * 5 4 3 26 26 H 1.09004 * 110.38960 * 40.24251 * 7 6 5 27 27 H 1.08996 * 110.50963 * 277.74694 * 7 6 5 28 28 H 1.09002 * 110.32526 * 217.32092 * 8 7 6 29 29 H 1.08998 * 110.32190 * 95.21733 * 8 7 6 30 30 H 0.96695 * 113.99929 * 298.55053 * 10 9 8 31 31 H 0.97002 * 119.99478 * 180.02562 * 14 13 11 32 32 H 1.08999 * 110.41133 * 82.17552 * 19 6 5 33 33 H 1.09001 * 110.41003 * 319.73948 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.2751 0.6762 5 6 4.6475 1.2760 0.6756 6 7 5.1365 2.4994 1.3254 7 6 4.9649 2.4249 2.8008 8 6 5.9671 3.4576 3.3596 9 6 7.0424 3.6095 2.2641 10 8 8.3231 3.2262 2.7692 11 6 7.0822 5.0302 1.7631 12 1 6.8666 5.2435 0.7266 13 6 7.3941 6.0577 2.6280 14 7 7.6573 5.7979 3.8900 15 14 7.4441 7.8186 2.0067 16 1 6.1006 8.4340 2.1546 17 1 8.4335 8.5944 2.7970 18 1 7.8377 7.8275 0.5749 19 6 6.6016 2.6546 1.1341 20 1 2.9714 -0.0359 -1.0270 21 1 2.9717 -0.8703 0.5452 22 1 2.7540 1.3116 1.7032 23 1 2.7537 2.1459 0.1309 24 1 5.0105 1.2397 -0.3515 25 1 5.0114 0.4051 1.2207 26 1 5.2081 1.4254 3.1614 27 1 3.9463 2.6935 3.0808 28 1 6.4158 3.0890 4.2821 29 1 5.4693 4.4110 3.5362 30 1 8.6307 3.7650 3.5109 31 1 7.8763 6.5209 4.4985 32 1 6.8132 3.0951 0.1598 33 1 7.1021 1.6913 1.2334 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:18 Heat of formation + Delta-G solvation = -50.727959 kcal Electronic energy + Delta-G solvation = -15311.064475 eV Core-core repulsion = 12756.492585 eV Total energy + Delta-G solvation = -2554.571890 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05289 -37.97291 -36.82788 -34.47339 -34.10830 -31.09966 -29.67977 -27.53577 -25.79799 -23.07686 -21.48918 -21.14959 -18.98507 -18.41098 -16.91900 -16.70756 -16.46229 -15.99022 -15.62080 -15.10195 -14.74868 -14.14513 -14.04470 -13.91330 -13.75829 -13.29131 -13.13871 -12.88879 -12.59398 -12.40926 -12.31788 -12.21942 -12.00509 -11.89527 -11.76044 -11.38469 -10.86618 -10.56189 -10.06736 -9.21728 -8.15541 -6.27667 1.42796 1.45017 1.54145 1.82565 1.89345 2.43622 2.98232 3.13477 3.35847 4.02217 4.11978 4.27473 4.29914 4.43335 4.49407 4.61470 4.70141 4.74880 4.84410 4.92299 4.98222 5.12709 5.27355 5.32122 5.45490 5.45821 5.71886 5.84069 6.07389 6.24775 6.40971 6.68605 6.77897 7.40821 7.48884 8.90121 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039378 B = 0.005980 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.885402 B = 4681.532623 C = 4981.727504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.238 3.762 3 C -0.015 4.015 4 C -0.104 4.104 5 C 0.043 3.957 6 N -0.516 5.516 7 C 0.042 3.958 8 C -0.116 4.116 9 C 0.227 3.773 10 O -0.602 6.602 11 C -0.540 4.540 12 H 0.052 0.948 13 C 0.025 3.975 14 N -0.917 5.917 15 Si 0.955 3.045 16 H -0.279 1.279 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.064 3.936 20 H 0.140 0.860 21 H 0.138 0.862 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.376 0.624 31 H 0.266 0.734 32 H 0.071 0.929 33 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 -9.778 -4.925 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.078 4.078 3 C -0.055 4.055 4 C -0.143 4.143 5 C -0.085 4.085 6 N -0.240 5.240 7 C -0.086 4.086 8 C -0.155 4.155 9 C 0.187 3.813 10 O -0.410 6.410 11 C -0.578 4.578 12 H 0.071 0.929 13 C -0.174 4.174 14 N -0.557 5.557 15 Si 0.781 3.219 16 H -0.205 1.205 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.064 4.064 20 H 0.158 0.842 21 H 0.156 0.844 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.225 0.775 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.331 -9.715 -5.487 12.828 hybrid contribution 0.974 1.087 0.896 1.712 sum -5.357 -8.628 -4.591 11.146 Atomic orbital electron populations 1.81249 1.15378 1.10993 1.11451 1.29913 0.95927 0.91025 0.90926 1.19499 0.78660 1.00845 1.06541 1.21359 0.94544 0.97068 1.01330 1.22364 0.95067 0.90406 1.00696 1.65236 1.13391 1.36416 1.08995 1.23098 0.99464 0.97542 0.88448 1.22645 0.97497 0.97573 0.97786 1.19594 0.80291 0.91755 0.89640 1.86072 1.38589 1.61634 1.54746 1.21910 1.47000 0.92840 0.96071 0.92946 1.25650 0.94145 1.02663 0.94980 1.69779 1.48134 1.33713 1.04122 0.85607 0.77696 0.80158 0.78410 1.20453 1.20824 1.19673 1.22771 0.87830 0.97227 0.98608 0.84211 0.84435 0.91971 0.91439 0.89051 0.92949 0.93291 0.90279 0.94304 0.93918 0.77517 0.92458 0.91100 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.77 18.54 20.00 0.37 -13.40 16 2 C 0.24 4.51 15.43 89.44 1.38 5.89 16 3 C -0.02 -0.16 5.70 28.79 0.16 0.01 16 4 C -0.10 -1.80 5.28 30.60 0.16 -1.64 16 5 C 0.04 0.92 4.83 86.30 0.42 1.34 16 6 N -0.52 -17.38 5.34 -881.04 -4.70 -22.08 16 7 C 0.04 1.47 5.93 86.42 0.51 1.98 16 8 C -0.12 -5.29 5.55 31.49 0.17 -5.11 16 9 C 0.23 11.06 1.05 -10.65 -0.01 11.05 16 10 O -0.60 -31.06 12.94 -148.98 -1.93 -32.99 16 11 C -0.54 -29.02 8.10 25.60 0.21 -28.81 16 12 H 0.05 2.84 7.53 -2.91 -0.02 2.82 16 13 C 0.03 1.33 5.02 84.66 0.43 1.75 16 14 N -0.92 -49.45 10.81 21.45 0.23 -49.22 16 15 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 C 0.06 2.54 5.74 86.45 0.50 3.04 16 20 H 0.14 0.69 8.14 -2.39 -0.02 0.68 16 21 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 22 H 0.06 1.20 7.47 -2.39 -0.02 1.18 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.09 1.69 8.08 -2.39 -0.02 1.67 16 25 H 0.05 0.99 7.77 -2.39 -0.02 0.97 16 26 H 0.05 1.52 7.75 -2.38 -0.02 1.50 16 27 H 0.08 2.55 7.86 -2.39 -0.02 2.53 16 28 H 0.04 1.79 7.98 -2.39 -0.02 1.78 16 29 H 0.04 2.17 7.23 -2.39 -0.02 2.15 16 30 H 0.38 19.95 7.32 -74.06 -0.54 19.40 16 31 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 32 H 0.07 2.88 7.67 -2.39 -0.02 2.86 16 33 H 0.04 1.50 7.94 -2.39 -0.02 1.48 16 Total: -1.00 -64.47 278.47 0.49 -63.99 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.56 Total: 19.43 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 3.93 Total: -10.50 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -4.10 Total: -84.70 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.93 Total: -32.99 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -64.47 0.49 -63.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.257 kcal (2) G-P(sol) polarization free energy of solvation -64.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds