Wall clock time and date at job start Sun Mar 29 2020 21:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00268 * 2 1 4 4 C 1.53001 * 109.47368 * 66.04718 * 3 2 1 5 5 C 1.50698 * 109.47458 * 180.02562 * 4 3 2 6 6 H 1.07995 * 119.99865 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00058 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99901 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99922 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47293 * 89.99907 * 9 7 5 11 11 H 1.48502 * 109.47008 * 210.00257 * 9 7 5 12 12 H 1.48497 * 109.47074 * 329.99889 * 9 7 5 13 13 C 1.46900 * 111.00042 * 236.04457 * 2 1 3 14 14 C 1.50701 * 109.46967 * 293.95539 * 13 2 1 15 15 C 1.35351 * 126.74701 * 94.99813 * 14 13 2 16 16 N 1.35322 * 106.16806 * 180.02562 * 15 14 13 17 17 C 1.46502 * 125.86299 * 180.26356 * 16 15 14 18 18 N 1.28714 * 108.26464 * 0.02562 * 16 15 14 19 19 N 1.28629 * 110.17964 * 359.97438 * 18 16 15 20 20 H 1.09000 * 109.47255 * 183.95682 * 1 2 3 21 21 H 1.09004 * 109.47043 * 303.95428 * 1 2 3 22 22 H 1.08998 * 109.46916 * 63.95125 * 1 2 3 23 23 H 1.09001 * 109.47306 * 186.04925 * 3 2 1 24 24 H 1.09006 * 109.47296 * 306.04521 * 3 2 1 25 25 H 1.09001 * 109.47076 * 300.00348 * 4 3 2 26 26 H 1.09001 * 109.47324 * 60.00069 * 4 3 2 27 27 H 0.97001 * 119.99891 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47282 * 173.95260 * 13 2 1 29 29 H 1.08998 * 109.46626 * 53.95782 * 13 2 1 30 30 H 1.07991 * 126.91591 * 0.05646 * 15 14 13 31 31 H 1.08997 * 109.47250 * 269.71379 * 17 16 15 32 32 H 1.09003 * 109.47080 * 29.71873 * 17 16 15 33 33 H 1.09006 * 109.46804 * 149.71734 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0575 1.3183 5 6 2.1711 3.4645 1.3180 6 1 2.7192 3.8325 0.4633 7 6 1.9651 4.2821 2.4090 8 7 1.2981 3.8337 3.4500 9 14 2.6333 6.0265 2.4083 10 1 1.6156 6.9462 1.8397 11 1 2.9483 6.4364 3.8005 12 1 3.8674 6.0835 1.5844 13 6 1.9954 -0.7660 -1.1376 14 6 1.6369 -2.2204 -0.9728 15 6 0.5663 -2.8557 -1.5040 16 7 0.6496 -4.1424 -1.0932 17 6 -0.2936 -5.2126 -1.4267 18 7 1.7025 -4.2654 -0.3632 19 7 2.3135 -3.1372 -0.2720 20 1 -0.3634 -1.0252 0.0709 21 1 -0.3633 0.5740 0.8525 22 1 -0.3633 0.4513 -0.9233 23 1 3.0798 1.3443 -0.1083 24 1 1.5612 1.9274 -0.8310 25 1 0.5473 2.0845 1.4266 26 1 2.0659 1.5016 2.1492 27 1 1.1535 4.4088 4.2177 28 1 3.0797 -0.6611 -1.1756 29 1 1.5611 -0.3872 -2.0627 30 1 -0.1999 -2.4231 -2.1301 31 1 -1.0805 -5.2513 -0.6735 32 1 -0.7352 -5.0163 -2.4038 33 1 0.2332 -6.1666 -1.4511 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595759294.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:37 Heat of formation + Delta-G solvation = 75.684094 kcal Electronic energy + Delta-G solvation = -14947.032029 eV Core-core repulsion = 12430.234528 eV Total energy + Delta-G solvation = -2516.797501 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.17429 -38.71273 -35.66645 -35.08671 -32.93657 -31.12002 -29.01666 -28.17063 -27.13917 -24.64343 -22.93246 -22.05455 -21.45784 -18.58530 -18.02254 -17.56007 -16.55553 -16.37870 -16.12370 -15.74632 -15.34550 -14.49218 -14.23621 -14.04088 -13.91366 -13.49072 -13.27165 -12.87473 -12.75829 -12.58560 -12.53559 -12.37553 -11.77671 -11.68704 -11.36106 -11.23915 -10.94476 -10.51436 -10.18924 -9.10591 -8.17272 -6.28710 0.67131 1.41926 1.44337 1.48793 1.55555 1.63769 2.43160 3.16268 3.24604 3.43246 3.82359 4.05547 4.19569 4.31641 4.36547 4.44755 4.54002 4.63388 4.65525 4.73681 4.83330 4.99893 5.04435 5.14132 5.18772 5.49260 5.69044 5.73867 5.81692 6.13423 6.30993 6.36994 6.89240 7.40465 7.56540 8.95165 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.071709 B = 0.004620 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.372109 B = 6059.006230 C = 6112.474302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.561 5.561 3 C 0.082 3.918 4 C 0.034 3.966 5 C -0.543 4.543 6 H 0.064 0.936 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.142 3.858 14 C -0.027 4.027 15 C -0.028 4.028 16 N -0.288 5.288 17 C 0.070 3.930 18 N -0.126 5.126 19 N -0.302 5.302 20 H 0.069 0.931 21 H 0.046 0.954 22 H 0.043 0.957 23 H 0.062 0.938 24 H 0.034 0.966 25 H -0.003 1.003 26 H -0.016 1.016 27 H 0.263 0.737 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.232 0.768 31 H 0.104 0.896 32 H 0.134 0.866 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.517 -14.806 -14.909 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.285 5.285 3 C -0.045 4.045 4 C -0.003 4.003 5 C -0.581 4.581 6 H 0.082 0.918 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.186 1.186 13 C 0.013 3.987 14 C -0.166 4.166 15 C -0.181 4.181 16 N -0.082 5.082 17 C -0.069 4.069 18 N -0.105 5.105 19 N -0.168 5.168 20 H 0.088 0.912 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.016 0.984 26 H 0.002 0.998 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.248 0.752 31 H 0.122 0.878 32 H 0.152 0.848 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.574 -16.033 -13.483 21.678 hybrid contribution -0.669 1.792 -0.625 2.012 sum -6.243 -14.242 -14.108 20.996 Atomic orbital electron populations 1.22305 0.87032 1.01401 1.00715 1.61827 1.08803 1.14558 1.43359 1.21966 0.98806 0.86040 0.97683 1.18944 0.95146 0.93671 0.92553 1.21651 1.35239 0.98754 1.02471 0.91812 1.25996 0.95449 1.03396 0.94999 1.70128 1.42239 1.38251 1.06836 0.85404 0.79081 0.78887 0.77395 1.19525 1.20988 1.18609 1.20253 1.00800 0.85195 0.92497 1.22055 0.95999 0.97502 1.01084 1.23934 1.03081 0.84583 1.06481 1.47684 1.18642 1.10405 1.31468 1.22749 0.90928 0.87970 1.05258 1.78206 0.98238 1.19530 1.14503 1.75013 1.25715 0.96698 1.19420 0.91224 0.93540 0.93829 0.91980 0.94774 0.98447 0.99785 0.92847 0.90239 0.90350 0.75156 0.87764 0.84794 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 9.13 127.69 1.17 2.27 16 2 N -0.56 -21.22 4.75 -927.05 -4.41 -25.62 16 3 C 0.08 3.54 4.90 86.30 0.42 3.96 16 4 C 0.03 1.89 4.90 29.85 0.15 2.04 16 5 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 6 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 8 N -0.93 -58.50 13.29 21.45 0.28 -58.21 16 9 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 13 C 0.14 4.24 5.53 85.56 0.47 4.71 16 14 C -0.03 -0.78 5.97 41.60 0.25 -0.53 16 15 C -0.03 -0.56 10.56 83.49 0.88 0.32 16 16 N -0.29 -5.85 3.74 -369.22 -1.38 -7.23 16 17 C 0.07 0.50 11.39 127.77 1.46 1.95 16 18 N -0.13 -3.85 13.16 37.02 0.49 -3.36 16 19 N -0.30 -10.86 12.41 -48.60 -0.60 -11.47 16 20 H 0.07 2.02 6.56 -2.39 -0.02 2.00 16 21 H 0.05 1.83 6.30 -2.38 -0.02 1.81 16 22 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 2.65 7.93 -2.39 -0.02 2.64 16 24 H 0.03 1.37 8.12 -2.38 -0.02 1.35 16 25 H 0.00 -0.16 6.47 -2.39 -0.02 -0.18 16 26 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 27 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.08 2.50 7.93 -2.39 -0.02 2.48 16 29 H 0.08 1.82 8.12 -2.39 -0.02 1.80 16 30 H 0.23 2.28 8.06 -2.92 -0.02 2.26 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -78.96 281.41 2.98 -75.97 By element: Atomic # 1 Polarization: -1.94 SS G_CDS: 1.08 Total: -0.85 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 5.49 Total: -16.16 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -5.62 Total: -105.89 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -78.96 2.98 -75.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595759294.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.659 kcal (2) G-P(sol) polarization free energy of solvation -78.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds