Wall clock time and date at job start Sun Mar 29 2020 21:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 N 1.46901 * 109.46772 * 2 1 4 4 C 1.46900 * 111.00074 * 305.09642 * 3 2 1 5 5 C 1.53001 * 109.46841 * 293.95089 * 4 3 2 6 6 C 1.46897 * 111.00092 * 69.04878 * 3 2 1 7 7 C 1.50699 * 109.47222 * 76.00905 * 6 3 2 8 8 C 1.34951 * 125.48895 * 94.82542 * 7 6 3 9 9 N 1.36662 * 106.72981 * 179.84898 * 8 7 6 10 10 C 1.37562 * 126.89008 * 180.15164 * 9 8 7 11 11 H 1.08008 * 119.99997 * 7.58052 * 10 9 8 12 12 C 1.39016 * 120.00498 * 187.58108 * 10 9 8 13 13 N 1.31253 * 119.99630 * 7.36990 * 12 10 9 14 14 Si 1.86798 * 120.00096 * 187.37185 * 12 10 9 15 15 H 1.48501 * 109.47104 * 94.96098 * 14 12 10 16 16 H 1.48492 * 109.47024 * 214.96153 * 14 12 10 17 17 H 1.48503 * 109.47331 * 334.96297 * 14 12 10 18 18 N 1.40330 * 106.22883 * 0.40549 * 9 8 7 19 19 N 1.28759 * 108.02690 * 359.74515 * 18 9 8 20 20 H 1.08994 * 109.46904 * 183.99918 * 1 2 3 21 21 H 1.09001 * 109.46917 * 304.00067 * 1 2 3 22 22 H 1.08991 * 109.47084 * 63.99790 * 1 2 3 23 23 H 1.08991 * 109.47130 * 240.00333 * 2 1 3 24 24 H 1.08998 * 109.46985 * 119.99763 * 2 1 3 25 25 H 1.08995 * 109.47584 * 53.95309 * 4 3 2 26 26 H 1.09001 * 109.47037 * 173.95647 * 4 3 2 27 27 H 1.08990 * 109.47514 * 300.00095 * 5 4 3 28 28 H 1.09001 * 109.46849 * 60.00443 * 5 4 3 29 29 H 1.09007 * 109.47132 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47456 * 196.00674 * 6 3 2 31 31 H 1.08997 * 109.47727 * 316.00895 * 6 3 2 32 32 H 1.07998 * 126.63087 * 0.02562 * 8 7 6 33 33 H 0.96993 * 119.99390 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4517 2.1442 -1.1221 5 6 1.9756 1.5730 -2.4413 6 6 1.7328 2.0448 1.2807 7 6 2.7002 1.5537 2.3266 8 6 3.8550 2.1604 2.6722 9 7 4.4233 1.3957 3.6520 10 6 5.6109 1.6367 4.3032 11 1 6.1355 2.5671 4.1428 12 6 6.1358 0.6829 5.1676 13 7 5.5786 -0.5024 5.2533 14 14 7.6340 1.0881 6.2070 15 1 7.1955 1.5492 7.5488 16 1 8.4786 -0.1246 6.3520 17 1 8.4189 2.1620 5.5467 18 7 3.5555 0.3120 3.8566 19 7 2.5558 0.4455 3.0562 20 1 -0.3633 -1.0251 0.0717 21 1 -0.3633 0.5747 0.8520 22 1 -0.3633 0.4505 -0.9236 23 1 1.8934 -0.5137 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 0.3647 2.0678 -1.0993 26 1 1.7443 3.1908 -1.0377 27 1 3.0626 1.6494 -2.4642 28 1 1.6830 0.5264 -2.5256 29 1 1.5538 2.1360 -3.2740 30 1 1.8390 3.1235 1.1656 31 1 0.7141 1.8110 1.5898 32 1 4.2518 3.0751 2.2571 33 1 5.9447 -1.1678 5.8567 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600972932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:03 Heat of formation + Delta-G solvation = 92.085091 kcal Electronic energy + Delta-G solvation = -15432.337628 eV Core-core repulsion = 12916.251327 eV Total energy + Delta-G solvation = -2516.086300 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04861 -37.79881 -34.04608 -31.49471 -31.00720 -30.56523 -27.99939 -25.79891 -24.34113 -23.32520 -21.22402 -19.92399 -19.18744 -17.38803 -15.66966 -15.51756 -15.45467 -14.46963 -14.05157 -13.54607 -13.44390 -13.00817 -12.68470 -12.22693 -11.99249 -11.92787 -11.60999 -11.44570 -11.31738 -11.19973 -11.00816 -10.71342 -10.56141 -10.23186 -9.85734 -9.51865 -9.14708 -8.61169 -7.77354 -7.30605 -6.77547 -4.54782 2.86882 2.99409 3.05243 3.39353 3.74190 3.95604 4.69074 4.76715 4.88334 5.23048 5.40520 5.45637 5.62649 5.69973 5.76578 5.77766 5.91836 5.97409 6.12456 6.20055 6.26101 6.36465 6.43995 6.52846 6.70033 6.84288 7.02859 7.20448 7.57116 7.63041 7.88747 7.99188 8.58556 9.20721 10.20818 10.28537 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.052741 B = 0.006190 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.769613 B = 4522.603275 C = 4736.512053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 N -0.530 5.530 4 C 0.045 3.955 5 C -0.146 4.146 6 C 0.153 3.847 7 C -0.065 4.065 8 C -0.099 4.099 9 N -0.150 5.150 10 C -0.319 4.319 11 H 0.119 0.881 12 C 0.050 3.950 13 N -0.764 5.764 14 Si 0.940 3.060 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.261 1.261 18 N -0.096 5.096 19 N -0.325 5.325 20 H 0.055 0.945 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.153 0.847 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 4.589 -8.170 10.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.080 4.080 3 N -0.254 5.254 4 C -0.083 4.083 5 C -0.204 4.204 6 C 0.024 3.976 7 C -0.212 4.212 8 C -0.254 4.254 9 N 0.079 4.921 10 C -0.455 4.455 11 H 0.137 0.863 12 C -0.169 4.169 13 N -0.391 5.391 14 Si 0.764 3.236 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.185 1.185 18 N -0.073 5.073 19 N -0.186 5.186 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.170 0.830 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.485 2.984 -7.314 8.634 hybrid contribution 0.211 1.169 0.021 1.188 sum -3.274 4.153 -7.293 9.009 Atomic orbital electron populations 1.22366 0.99002 1.01921 1.01232 1.22157 0.92172 0.90465 1.03185 1.62223 1.58603 1.02249 1.02365 1.22118 0.96903 0.97807 0.91474 1.21765 1.01985 1.00765 0.95892 1.20042 0.95062 0.96544 0.85972 1.20485 0.98758 0.97557 1.04419 1.22287 0.99275 1.03250 1.00565 1.46639 1.13549 1.13613 1.18325 1.20092 0.96384 1.04961 1.24066 0.86315 1.25742 0.99669 0.94276 0.97259 1.70118 1.36532 1.02785 1.29659 0.85713 0.79290 0.78939 0.79698 1.19355 1.19876 1.18519 1.82455 0.96667 1.07009 1.21168 1.73952 1.19919 1.16944 1.07759 0.92555 0.92354 0.93123 0.91679 0.89085 0.94867 0.91340 0.91994 0.92860 0.92993 0.91136 0.94137 0.82962 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 9.15 37.16 0.34 -2.34 16 2 C 0.05 0.82 5.64 -3.82 -0.02 0.80 16 3 N -0.53 -9.12 4.63 -236.07 -1.09 -10.22 16 4 C 0.05 0.61 5.31 -3.82 -0.02 0.59 16 5 C -0.15 -1.75 9.83 37.16 0.37 -1.38 16 6 C 0.15 2.84 5.42 -4.98 -0.03 2.81 16 7 C -0.07 -1.55 6.16 -83.05 -0.51 -2.06 16 8 C -0.10 -2.42 11.47 -16.57 -0.19 -2.61 16 9 N -0.15 -4.18 3.77 -11.47 -0.04 -4.22 16 10 C -0.32 -8.41 10.29 -14.69 -0.15 -8.56 16 11 H 0.12 2.79 7.84 -52.48 -0.41 2.38 16 12 C 0.05 1.27 5.48 -17.51 -0.10 1.17 16 13 N -0.76 -21.08 11.99 55.50 0.67 -20.41 16 14 Si 0.94 18.50 29.56 -169.99 -5.02 13.48 16 15 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 16 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 17 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 18 N -0.10 -2.86 11.83 60.35 0.71 -2.15 16 19 N -0.32 -8.86 11.36 33.16 0.38 -8.48 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.89 6.28 -51.93 -0.33 0.57 16 22 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 23 H 0.06 1.02 6.72 -51.93 -0.35 0.68 16 24 H 0.09 1.90 6.69 -51.93 -0.35 1.55 16 25 H 0.03 0.42 5.97 -51.93 -0.31 0.11 16 26 H 0.07 0.86 7.83 -51.93 -0.41 0.46 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.64 6.67 -51.93 -0.35 0.29 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.15 7.73 -51.93 -0.40 0.75 16 31 H 0.04 0.74 6.06 -51.93 -0.31 0.43 16 32 H 0.15 3.18 8.06 -52.49 -0.42 2.76 16 33 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 LS Contribution 272.22 15.07 4.10 4.10 Total: -1.00 -30.98 272.22 -4.99 -35.97 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -4.37 Total: 3.51 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.31 Total: -11.58 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.62 Total: -45.48 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.98 -4.99 -35.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.055 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds