Wall clock time and date at job start Sun Mar 29 2020 21:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46798 * 125.21051 * 2 1 4 4 N 1.48070 * 106.14950 * 197.56468 * 3 2 1 5 5 C 1.46898 * 110.99786 * 214.01816 * 4 3 2 6 6 C 1.52996 * 109.47116 * 189.29853 * 5 4 3 7 7 C 1.50702 * 115.54597 * 57.08490 * 6 5 4 8 8 H 1.07993 * 120.00347 * 264.97114 * 7 6 5 9 9 C 1.37883 * 119.99768 * 85.24878 * 7 6 5 10 10 N 1.31518 * 119.99861 * 182.67185 * 9 7 6 11 11 Si 1.86804 * 120.00142 * 2.67388 * 9 7 6 12 12 H 1.48497 * 109.46960 * 92.30445 * 11 9 7 13 13 H 1.48501 * 109.47030 * 212.30644 * 11 9 7 14 14 H 1.48496 * 109.46740 * 332.30701 * 11 9 7 15 15 C 1.52998 * 117.50402 * 202.75379 * 6 5 4 16 16 C 1.52999 * 117.50259 * 271.41644 * 6 5 4 17 17 C 1.48241 * 103.15396 * 332.96377 * 4 3 2 18 18 C 1.34849 * 125.20070 * 179.97438 * 2 1 3 19 19 O 1.21284 * 125.75380 * 359.59040 * 18 2 1 20 20 H 1.08994 * 109.47187 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46716 * 300.01988 * 1 2 3 22 22 H 1.08998 * 109.46888 * 60.01252 * 1 2 3 23 23 H 1.09002 * 110.11729 * 78.39163 * 3 2 1 24 24 H 1.08999 * 110.11802 * 316.73927 * 3 2 1 25 25 H 1.09006 * 109.47125 * 69.30488 * 5 4 3 26 26 H 1.08999 * 109.47654 * 309.30769 * 5 4 3 27 27 H 0.97006 * 119.99782 * 179.97438 * 10 9 7 28 28 H 1.08995 * 117.50137 * 215.00746 * 15 6 5 29 29 H 1.09005 * 117.49508 * 0.02690 * 15 6 5 30 30 H 1.09001 * 117.49611 * 359.97438 * 16 6 5 31 31 H 1.09006 * 117.49688 * 144.96876 * 16 6 5 32 32 H 1.09000 * 110.37627 * 145.17357 * 17 4 3 33 33 H 1.09000 * 110.37872 * 267.51964 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3115 1.1994 0.0000 4 7 3.6568 0.7541 -0.4292 5 6 4.7075 1.5282 0.2451 6 6 6.0632 1.2063 -0.3868 7 6 6.1634 1.4518 -1.8703 8 1 5.9939 0.6419 -2.5644 9 6 6.4771 2.7091 -2.3414 10 7 6.5130 2.9361 -3.6363 11 14 6.8512 4.0900 -1.1403 12 1 8.3137 4.1443 -0.8885 13 1 6.3996 5.3824 -1.7158 14 1 6.1377 3.8410 0.1379 15 6 7.3141 1.4593 0.4571 16 6 6.8485 0.0260 0.1885 17 6 3.6916 -0.6672 -0.0094 18 6 2.2424 -1.1019 0.0005 19 8 1.8467 -2.2483 0.0080 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5136 -0.8901 23 1 2.3594 1.6245 1.0026 24 1 1.9187 1.9355 -0.7014 25 1 4.7288 1.2671 1.3032 26 1 4.5001 2.5928 0.1378 27 1 6.7334 3.8207 -3.9677 28 1 8.2094 1.8033 -0.0606 29 1 7.1711 1.8547 1.4628 30 1 6.3995 -0.5210 1.0176 31 1 7.4374 -0.5732 -0.5061 32 1 4.2609 -1.2605 -0.7249 33 1 4.1222 -0.7580 0.9879 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602801731.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:15 Heat of formation + Delta-G solvation = 23.441285 kcal Electronic energy + Delta-G solvation = -15841.928323 eV Core-core repulsion = 13290.572653 eV Total energy + Delta-G solvation = -2551.355670 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.35364 -37.59167 -36.22793 -33.70202 -32.00438 -28.96079 -27.26738 -26.00610 -24.79372 -22.05441 -21.69376 -19.76440 -18.98717 -16.71365 -16.45389 -15.84090 -15.35814 -14.96854 -14.27651 -13.99102 -13.75233 -13.63123 -13.10197 -12.71885 -12.61831 -12.31218 -12.24915 -12.07152 -11.50915 -11.10253 -10.60570 -10.49154 -10.14802 -9.70443 -9.56030 -9.13285 -8.88969 -8.55742 -8.45412 -7.99852 -6.02606 -4.02393 2.67795 3.02529 3.29207 3.39173 3.40021 4.12532 4.45560 4.53937 4.91968 5.08257 5.23841 5.25031 5.39939 5.45615 5.52626 5.64609 5.72064 5.76980 5.98221 6.01917 6.08764 6.27748 6.42134 6.48495 6.66829 6.79135 6.96167 7.08907 7.24622 7.43470 7.79784 8.25400 8.59311 9.03607 9.60013 11.09979 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034474 B = 0.008709 C = 0.008053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.000761 B = 3214.202768 C = 3475.969112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.632 5.632 3 C 0.253 3.747 4 N -0.472 5.472 5 C 0.084 3.916 6 C 0.010 3.990 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.074 3.926 10 N -0.900 5.900 11 Si 0.878 3.122 12 H -0.282 1.282 13 H -0.296 1.296 14 H -0.261 1.261 15 C -0.201 4.201 16 C -0.184 4.184 17 C 0.008 3.992 18 C 0.519 3.481 19 O -0.535 6.535 20 H 0.080 0.920 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.045 0.955 24 H 0.095 0.905 25 H 0.020 0.980 26 H 0.078 0.922 27 H 0.262 0.738 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.577 -1.174 9.790 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.368 5.368 3 C 0.040 3.960 4 N -0.197 5.197 5 C -0.044 4.044 6 C 0.009 3.991 7 C -0.498 4.498 8 H 0.097 0.903 9 C -0.127 4.127 10 N -0.539 5.539 11 Si 0.707 3.293 12 H -0.208 1.208 13 H -0.223 1.223 14 H -0.185 1.185 15 C -0.239 4.239 16 C -0.221 4.221 17 C -0.122 4.122 18 C 0.307 3.693 19 O -0.411 6.411 20 H 0.099 0.901 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.112 0.888 25 H 0.038 0.962 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.769 -1.553 9.063 12.038 hybrid contribution 0.174 0.984 1.445 1.757 sum -7.595 -0.568 10.508 12.978 Atomic orbital electron populations 1.21478 0.77653 1.03481 1.01489 1.48487 1.06606 1.07857 1.73836 1.22972 0.86499 0.87219 0.99287 1.65657 1.00315 1.00857 1.52904 1.22211 0.92102 0.97712 0.92396 1.19319 0.86482 0.97921 0.95387 1.20113 1.46212 0.96560 0.86898 0.90339 1.24950 0.94903 0.98166 0.94724 1.69903 1.49208 1.22297 1.12446 0.86901 0.78847 0.81546 0.82041 1.20795 1.22298 1.18548 1.23009 1.01210 0.99910 0.99743 1.22884 1.06071 0.90855 1.02273 1.23136 0.93811 0.92827 1.02463 1.21286 0.89384 0.84517 0.74140 1.90690 1.79929 1.19563 1.50917 0.90076 0.92246 0.91834 0.93687 0.88756 0.96185 0.90343 0.92799 0.89298 0.91160 0.91311 0.89391 0.86163 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.11 11.22 59.85 0.67 1.79 16 2 N -0.63 -9.30 3.37 -183.92 -0.62 -9.92 16 3 C 0.25 3.72 7.22 -61.70 -0.45 3.27 16 4 N -0.47 -8.59 5.24 -237.23 -1.24 -9.83 16 5 C 0.08 1.57 4.26 -3.83 -0.02 1.56 16 6 C 0.01 0.22 0.78 -155.66 -0.12 0.10 16 7 C -0.46 -12.24 9.17 -34.44 -0.32 -12.56 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 11 Si 0.88 20.76 24.94 -169.99 -4.24 16.52 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.26 -5.66 5.57 56.52 0.31 -5.34 16 15 C -0.20 -4.01 7.49 -26.70 -0.20 -4.21 16 16 C -0.18 -3.50 9.34 -26.69 -0.25 -3.75 16 17 C 0.01 0.14 5.83 -3.94 -0.02 0.12 16 18 C 0.52 8.96 8.19 -10.66 -0.09 8.87 16 19 O -0.53 -10.62 17.50 5.55 0.10 -10.52 16 20 H 0.08 0.93 7.65 -51.93 -0.40 0.54 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.58 7.79 -51.93 -0.40 0.18 16 24 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.02 0.33 7.64 -51.93 -0.40 -0.06 16 26 H 0.08 1.52 6.57 -51.93 -0.34 1.18 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.09 1.89 7.20 -51.93 -0.37 1.51 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.14 7.72 -51.93 -0.40 0.74 16 31 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 32 H 0.12 2.16 8.14 -51.93 -0.42 1.73 16 33 H 0.08 1.21 7.10 -51.93 -0.37 0.84 16 LS Contribution 270.67 15.07 4.08 4.08 Total: -1.00 -31.10 270.67 -6.90 -38.00 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.86 Total: 0.65 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.89 Total: -2.87 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -1.09 Total: -45.87 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.10 Total: -10.52 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.24 Total: 16.52 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.10 -6.90 -38.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602801731.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.445 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds