Wall clock time and date at job start Sun Mar 29 2020 21:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46798 * 125.21051 * 2 1 4 4 N 1.48070 * 106.14950 * 197.56468 * 3 2 1 5 5 C 1.46898 * 110.99786 * 214.01816 * 4 3 2 6 6 C 1.52996 * 109.47116 * 189.29853 * 5 4 3 7 7 C 1.50702 * 115.54597 * 57.08490 * 6 5 4 8 8 H 1.07993 * 120.00347 * 264.97114 * 7 6 5 9 9 C 1.37883 * 119.99768 * 85.24878 * 7 6 5 10 10 N 1.31518 * 119.99861 * 182.67185 * 9 7 6 11 11 Si 1.86804 * 120.00142 * 2.67388 * 9 7 6 12 12 H 1.48497 * 109.46960 * 92.30445 * 11 9 7 13 13 H 1.48501 * 109.47030 * 212.30644 * 11 9 7 14 14 H 1.48496 * 109.46740 * 332.30701 * 11 9 7 15 15 C 1.52998 * 117.50402 * 202.75379 * 6 5 4 16 16 C 1.52999 * 117.50259 * 271.41644 * 6 5 4 17 17 C 1.48241 * 103.15396 * 332.96377 * 4 3 2 18 18 C 1.34849 * 125.20070 * 179.97438 * 2 1 3 19 19 O 1.21284 * 125.75380 * 359.59040 * 18 2 1 20 20 H 1.08994 * 109.47187 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46716 * 300.01988 * 1 2 3 22 22 H 1.08998 * 109.46888 * 60.01252 * 1 2 3 23 23 H 1.09002 * 110.11729 * 78.39163 * 3 2 1 24 24 H 1.08999 * 110.11802 * 316.73927 * 3 2 1 25 25 H 1.09006 * 109.47125 * 69.30488 * 5 4 3 26 26 H 1.08999 * 109.47654 * 309.30769 * 5 4 3 27 27 H 0.97006 * 119.99782 * 179.97438 * 10 9 7 28 28 H 1.08995 * 117.50137 * 215.00746 * 15 6 5 29 29 H 1.09005 * 117.49508 * 0.02690 * 15 6 5 30 30 H 1.09001 * 117.49611 * 359.97438 * 16 6 5 31 31 H 1.09006 * 117.49688 * 144.96876 * 16 6 5 32 32 H 1.09000 * 110.37627 * 145.17357 * 17 4 3 33 33 H 1.09000 * 110.37872 * 267.51964 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3115 1.1994 0.0000 4 7 3.6568 0.7541 -0.4292 5 6 4.7075 1.5282 0.2451 6 6 6.0632 1.2063 -0.3868 7 6 6.1634 1.4518 -1.8703 8 1 5.9939 0.6419 -2.5644 9 6 6.4771 2.7091 -2.3414 10 7 6.5130 2.9361 -3.6363 11 14 6.8512 4.0900 -1.1403 12 1 8.3137 4.1443 -0.8885 13 1 6.3996 5.3824 -1.7158 14 1 6.1377 3.8410 0.1379 15 6 7.3141 1.4593 0.4571 16 6 6.8485 0.0260 0.1885 17 6 3.6916 -0.6672 -0.0094 18 6 2.2424 -1.1019 0.0005 19 8 1.8467 -2.2483 0.0080 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5136 -0.8901 23 1 2.3594 1.6245 1.0026 24 1 1.9187 1.9355 -0.7014 25 1 4.7288 1.2671 1.3032 26 1 4.5001 2.5928 0.1378 27 1 6.7334 3.8207 -3.9677 28 1 8.2094 1.8033 -0.0606 29 1 7.1711 1.8547 1.4628 30 1 6.3995 -0.5210 1.0176 31 1 7.4374 -0.5732 -0.5061 32 1 4.2609 -1.2605 -0.7249 33 1 4.1222 -0.7580 0.9879 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602801731.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:15 Heat of formation + Delta-G solvation = 0.297959 kcal Electronic energy + Delta-G solvation = -15842.931893 eV Core-core repulsion = 13290.572653 eV Total energy + Delta-G solvation = -2552.359240 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.63464 -39.10225 -37.66425 -34.95849 -34.06714 -30.24516 -28.44320 -27.75665 -26.28956 -23.36254 -23.24004 -21.06415 -20.69709 -18.33187 -17.75164 -17.32367 -16.75883 -16.58098 -15.69686 -15.37550 -15.25042 -14.76901 -14.69083 -14.47561 -13.89396 -13.65244 -13.47591 -13.21726 -12.98140 -12.94162 -12.28551 -12.08815 -11.84428 -11.40401 -11.06797 -10.89819 -10.46718 -10.21843 -10.09287 -9.24233 -8.14128 -6.17986 1.36431 1.44244 1.45708 1.57731 1.92008 2.47996 2.78677 3.21173 3.30295 3.37620 3.94515 4.12742 4.25008 4.29158 4.39904 4.43756 4.48737 4.55005 4.60561 4.69217 4.82652 4.83773 4.92400 5.14577 5.28300 5.43307 5.49664 5.56040 5.82511 6.00513 6.11746 6.48724 6.88637 6.99212 7.48315 9.02732 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034474 B = 0.008709 C = 0.008053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.000761 B = 3214.202768 C = 3475.969112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.627 5.627 3 C 0.255 3.745 4 N -0.508 5.508 5 C 0.092 3.908 6 C -0.017 4.017 7 C -0.452 4.452 8 H 0.022 0.978 9 C 0.011 3.989 10 N -0.960 5.960 11 Si 0.941 3.059 12 H -0.280 1.280 13 H -0.304 1.304 14 H -0.219 1.219 15 C -0.193 4.193 16 C -0.170 4.170 17 C 0.015 3.985 18 C 0.513 3.487 19 O -0.570 6.570 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.100 0.900 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.260 0.740 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.386 -0.115 13.196 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.361 5.361 3 C 0.042 3.958 4 N -0.234 5.234 5 C -0.036 4.036 6 C -0.018 4.018 7 C -0.490 4.490 8 H 0.040 0.960 9 C -0.185 4.185 10 N -0.601 5.601 11 Si 0.767 3.233 12 H -0.207 1.207 13 H -0.232 1.232 14 H -0.142 1.142 15 C -0.231 4.231 16 C -0.207 4.207 17 C -0.116 4.116 18 C 0.301 3.699 19 O -0.449 6.449 20 H 0.091 0.909 21 H 0.108 0.892 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.118 0.882 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.604 -0.490 12.502 15.184 hybrid contribution 0.397 0.559 0.290 0.745 sum -8.207 0.069 12.792 15.198 Atomic orbital electron populations 1.21745 0.75444 1.03674 1.03703 1.48639 1.07987 1.07105 1.72368 1.23065 0.84629 0.86948 1.01117 1.65510 1.02018 1.01426 1.54418 1.22026 0.90098 0.97556 0.93939 1.19258 0.89086 1.00800 0.92652 1.20235 1.44492 0.94769 0.89507 0.95962 1.25841 0.95098 1.01204 0.96308 1.70090 1.51999 1.22884 1.15133 0.85875 0.78924 0.77311 0.81224 1.20656 1.23201 1.14151 1.23058 0.99112 1.00232 1.00697 1.22895 1.04725 0.90588 1.02477 1.23017 0.93651 0.92034 1.02900 1.21339 0.89904 0.84551 0.74123 1.90668 1.80449 1.20918 1.52908 0.90920 0.89152 0.90452 0.90495 0.88221 0.92539 0.90665 0.93121 0.91104 0.87541 0.87829 0.91125 0.88408 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.83 11.22 127.77 1.43 3.27 16 2 N -0.63 -16.85 3.37 -854.15 -2.88 -19.72 16 3 C 0.25 6.62 7.22 170.24 1.23 7.85 16 4 N -0.51 -17.37 5.24 -904.45 -4.74 -22.11 16 5 C 0.09 3.09 4.26 86.30 0.37 3.46 16 6 C -0.02 -0.69 0.78 -52.93 -0.04 -0.73 16 7 C -0.45 -24.59 9.17 25.60 0.23 -24.35 16 8 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 9 C 0.01 0.61 5.47 84.66 0.46 1.07 16 10 N -0.96 -59.77 13.96 21.45 0.30 -59.47 16 11 Si 0.94 42.12 24.94 68.60 1.71 43.83 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 14 H -0.22 -8.26 5.57 99.48 0.55 -7.71 16 15 C -0.19 -7.01 7.49 30.62 0.23 -6.78 16 16 C -0.17 -6.03 9.34 30.62 0.29 -5.75 16 17 C 0.01 0.47 5.83 85.49 0.50 0.97 16 18 C 0.51 17.03 8.19 87.84 0.72 17.75 16 19 O -0.57 -22.42 17.50 -3.04 -0.05 -22.47 16 20 H 0.07 1.55 7.65 -2.39 -0.02 1.53 16 21 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 23 H 0.08 1.58 7.79 -2.39 -0.02 1.56 16 24 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.06 1.52 7.64 -2.38 -0.02 1.50 16 26 H 0.08 2.57 6.57 -2.39 -0.02 2.56 16 27 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 28 H 0.07 2.83 7.20 -2.39 -0.02 2.82 16 29 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 30 H 0.10 2.98 7.72 -2.39 -0.02 2.96 16 31 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 32 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 33 H 0.10 2.73 7.10 -2.39 -0.02 2.71 16 Total: -1.00 -70.68 270.67 0.70 -69.99 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.93 Total: 13.20 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 5.42 Total: -3.24 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -7.32 Total: -101.30 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.05 Total: -22.47 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.71 Total: 43.83 kcal Total: -70.68 0.70 -69.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602801731.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.287 kcal (2) G-P(sol) polarization free energy of solvation -70.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds