Wall clock time and date at job start Sun Mar 29 2020 21:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47249 * 2 1 4 4 N 1.46499 * 109.47461 * 179.97438 * 3 2 1 5 5 N 1.39142 * 124.43961 * 269.97694 * 4 3 2 6 6 C 1.27573 * 113.16842 * 180.02562 * 5 4 3 7 7 C 1.50693 * 126.42099 * 180.02562 * 6 5 4 8 8 C 1.51441 * 107.16144 * 0.02562 * 6 5 4 9 9 H 1.08996 * 110.74382 * 118.57551 * 8 6 5 10 10 C 1.52998 * 110.60562 * 241.48280 * 8 6 5 11 11 C 1.50706 * 109.47348 * 180.58117 * 10 8 6 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 8 13 13 C 1.37871 * 120.00102 * 179.97438 * 11 10 8 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 C 1.34956 * 124.43782 * 89.99621 * 4 3 2 20 20 O 1.21296 * 127.49868 * 359.96561 * 19 4 3 21 21 H 1.08998 * 109.47100 * 59.99612 * 1 2 3 22 22 H 1.08991 * 109.47095 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.47116 * 300.00203 * 1 2 3 24 24 H 1.08995 * 109.47049 * 239.99929 * 2 1 3 25 25 H 1.09001 * 109.47193 * 119.99448 * 2 1 3 26 26 H 1.09009 * 109.47227 * 59.99865 * 3 2 1 27 27 H 1.08999 * 109.46943 * 300.00501 * 3 2 1 28 28 H 1.08996 * 109.47556 * 269.95127 * 7 6 5 29 29 H 1.09006 * 109.46892 * 29.94963 * 7 6 5 30 30 H 1.09001 * 109.46928 * 149.94686 * 7 6 5 31 31 H 1.09001 * 109.47671 * 60.58326 * 10 8 6 32 32 H 1.09006 * 109.47297 * 300.58045 * 10 8 6 33 33 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 7 4.2915 1.4433 1.1485 6 6 5.5427 1.4437 0.8997 7 6 6.6567 1.4439 1.9145 8 6 5.6987 1.4439 -0.6067 9 1 6.2232 2.3393 -0.9403 10 6 6.4347 0.1859 -1.0720 11 6 6.5884 0.2192 -2.5708 12 1 6.1996 1.0540 -3.1351 13 6 7.2253 -0.8160 -3.2217 14 7 7.6983 -1.8328 -2.5346 15 14 7.4152 -0.7750 -5.0795 16 1 8.1307 -1.9954 -5.5310 17 1 6.0731 -0.7244 -5.7133 18 1 8.1932 0.4277 -5.4712 19 6 4.2687 1.4424 -1.1121 20 8 3.8931 1.4415 -2.2654 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 6.9256 2.4715 2.1587 29 1 6.3258 0.9306 2.8174 30 1 7.5245 0.9296 1.5015 31 1 5.8630 -0.6967 -0.7850 32 1 7.4197 0.1480 -0.6065 33 1 7.5994 -1.8542 -1.5699 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603920652.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:33 Heat of formation + Delta-G solvation = -4.077311 kcal Electronic energy + Delta-G solvation = -15584.589045 eV Core-core repulsion = 13032.040079 eV Total energy + Delta-G solvation = -2552.548966 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76456 -36.80795 -35.43130 -33.63293 -32.05030 -30.23044 -28.59621 -26.17933 -24.78935 -22.53681 -21.51314 -20.24810 -18.97634 -16.79926 -16.39682 -15.50253 -15.14105 -14.53407 -14.06728 -13.67772 -13.48272 -13.29007 -13.17007 -12.35515 -12.28548 -12.18846 -11.95895 -11.85192 -11.59782 -11.43438 -11.01318 -10.69689 -10.67305 -10.30866 -10.10847 -9.84029 -9.12982 -8.49845 -8.31748 -8.13381 -6.35572 -4.04472 2.11389 2.82275 3.21770 3.48135 3.52598 3.70133 4.41112 4.54944 4.71680 5.02391 5.04253 5.27358 5.38188 5.45221 5.48186 5.60585 5.65108 5.75935 5.82027 5.89536 5.99449 6.03886 6.15660 6.27105 6.34128 6.60761 6.84850 7.08572 7.20094 8.09311 8.17276 8.48321 8.55796 8.88165 9.65033 11.04784 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024241 B = 0.008875 C = 0.007259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.791698 B = 3154.122980 C = 3856.448127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.144 4.144 3 C 0.145 3.855 4 N -0.484 5.484 5 N -0.256 5.256 6 C 0.095 3.905 7 C -0.074 4.074 8 C -0.126 4.126 9 H 0.121 0.879 10 C 0.042 3.958 11 C -0.595 4.595 12 H 0.060 0.940 13 C 0.018 3.982 14 N -0.914 5.914 15 Si 1.069 2.931 16 H -0.283 1.283 17 H -0.287 1.287 18 H -0.287 1.287 19 C 0.510 3.490 20 O -0.483 6.483 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.009 0.991 32 H 0.028 0.972 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 6.316 8.921 13.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C 0.024 3.976 4 N -0.306 5.306 5 N -0.063 5.063 6 C -0.098 4.098 7 C -0.133 4.133 8 C -0.150 4.150 9 H 0.139 0.861 10 C 0.004 3.996 11 C -0.634 4.634 12 H 0.078 0.922 13 C -0.186 4.186 14 N -0.550 5.550 15 Si 0.897 3.103 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.213 1.213 19 C 0.298 3.702 20 O -0.353 6.353 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.027 0.973 32 H 0.046 0.954 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.842 5.487 7.588 12.214 hybrid contribution -0.290 0.812 0.691 1.105 sum -8.132 6.299 8.279 13.204 Atomic orbital electron populations 1.21672 0.94966 1.01973 1.01743 1.21949 0.96058 0.97107 1.03163 1.21374 0.75931 0.97352 1.02968 1.49835 1.05995 1.71620 1.03110 1.74458 1.04885 1.15531 1.11384 1.25446 0.92916 0.95143 0.96275 1.20302 0.94075 1.03351 0.95563 1.21887 0.96001 1.05678 0.91410 0.86145 1.18988 0.94096 0.88399 0.98085 1.22022 1.40744 1.09478 0.91106 0.92208 1.25814 0.93419 0.92367 1.06971 1.70819 1.44121 1.30993 1.09109 0.83538 0.76528 0.75908 0.74309 1.20846 1.21354 1.21339 1.21345 0.88802 0.75022 0.85040 1.90708 1.79461 1.47602 1.17508 0.92515 0.92388 0.92650 0.91363 0.91469 0.89992 0.89767 0.89862 0.90377 0.89247 0.97252 0.95427 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.14 -2.10 6.26 -26.73 -0.17 -2.27 16 3 C 0.15 2.24 6.24 -4.04 -0.03 2.21 16 4 N -0.48 -9.29 3.54 -59.88 -0.21 -9.50 16 5 N -0.26 -4.60 12.02 35.53 0.43 -4.17 16 6 C 0.10 1.64 6.93 -78.73 -0.55 1.09 16 7 C -0.07 -0.92 10.49 36.00 0.38 -0.54 16 8 C -0.13 -2.67 3.02 -92.08 -0.28 -2.95 16 9 H 0.12 2.44 8.14 -51.93 -0.42 2.02 16 10 C 0.04 1.07 3.81 -27.88 -0.11 0.96 16 11 C -0.60 -17.25 8.36 -34.44 -0.29 -17.54 16 12 H 0.06 1.79 7.05 -52.48 -0.37 1.41 16 13 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 14 N -0.91 -28.04 13.65 55.43 0.76 -27.28 16 15 Si 1.07 26.36 29.90 -169.99 -5.08 21.28 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.51 11.59 7.56 -10.43 -0.08 11.51 16 20 O -0.48 -12.52 16.61 5.54 0.09 -12.43 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 27 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.11 7.57 -51.93 -0.39 0.72 16 31 H 0.01 0.25 8.01 -51.93 -0.42 -0.16 16 32 H 0.03 0.68 7.45 -51.93 -0.39 0.29 16 33 H 0.27 8.03 7.22 -40.82 -0.29 7.74 16 LS Contribution 283.70 15.07 4.28 4.28 Total: -1.00 -33.93 283.70 -5.46 -39.39 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -4.88 Total: -3.22 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -0.84 Total: -8.34 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.97 Total: -40.95 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.09 Total: -12.43 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -5.08 Total: 21.28 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.93 -5.46 -39.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603920652.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.314 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds