Wall clock time and date at job start Sun Mar 29 2020 21:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30829 * 125.96282 * 2 1 4 4 C 1.33237 * 109.83268 * 180.02562 * 3 2 1 5 5 C 1.50695 * 125.53142 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.47619 * 89.99387 * 5 4 3 7 7 C 1.46902 * 110.99524 * 66.04936 * 6 5 4 8 8 C 1.46894 * 111.00342 * 189.99958 * 6 5 4 9 9 H 1.08998 * 109.46828 * 55.00887 * 8 6 5 10 10 C 1.52997 * 109.47515 * 295.00322 * 8 6 5 11 11 C 1.50706 * 109.47162 * 174.99916 * 8 6 5 12 12 H 1.07998 * 119.99629 * 0.02562 * 11 8 6 13 13 C 1.37875 * 119.99955 * 179.97438 * 11 8 6 14 14 N 1.31510 * 120.00308 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47233 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46997 * 120.00173 * 15 13 11 18 18 H 1.48501 * 109.47364 * 240.00497 * 15 13 11 19 19 N 1.30713 * 108.94590 * 0.26222 * 4 3 2 20 20 N 1.34432 * 125.95920 * 180.02562 * 2 1 3 21 21 H 0.96998 * 126.82280 * 359.97157 * 20 2 1 22 22 H 1.08992 * 109.47278 * 90.00108 * 1 2 3 23 23 H 1.08998 * 109.46819 * 210.00063 * 1 2 3 24 24 H 1.09004 * 109.46813 * 329.99712 * 1 2 3 25 25 H 1.09006 * 109.47166 * 329.99405 * 5 4 3 26 26 H 1.09003 * 109.47429 * 209.99976 * 5 4 3 27 27 H 1.09003 * 109.46808 * 183.95968 * 7 6 5 28 28 H 1.09004 * 109.47176 * 303.95456 * 7 6 5 29 29 H 1.08994 * 109.47263 * 63.95670 * 7 6 5 30 30 H 1.09002 * 109.47153 * 59.99762 * 10 8 6 31 31 H 1.09001 * 109.46832 * 299.99953 * 10 8 6 32 32 H 1.09004 * 109.47261 * 179.97438 * 10 8 6 33 33 H 0.96998 * 120.00365 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7372 1.6235 -0.0002 6 7 5.1216 1.9265 1.3848 7 6 5.6252 0.7262 2.0659 8 6 6.1103 3.0119 1.4314 9 1 5.7195 3.8822 0.9041 10 6 7.4067 2.5501 0.7629 11 6 6.3879 3.3774 2.8669 12 1 5.8808 2.8552 3.6647 13 6 7.2898 4.3776 3.1616 14 7 7.9077 5.0132 2.1901 15 14 7.6344 4.8301 4.9409 16 1 6.8176 3.9725 5.8369 17 1 9.0750 4.6213 5.2347 18 1 7.2848 6.2558 5.1658 19 7 3.6195 -0.6168 -0.0066 20 7 2.2964 -1.0881 -0.0005 21 1 2.0093 -2.0147 -0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 4.4701 2.5473 -0.5134 26 1 5.5742 1.1512 -0.5146 27 1 5.8364 0.9620 3.1089 28 1 4.8736 -0.0618 2.0165 29 1 6.5390 0.3879 1.5776 30 1 7.2059 2.2858 -0.2754 31 1 7.7974 1.6799 1.2903 32 1 8.1402 3.3558 0.7971 33 1 8.5420 5.7171 2.3974 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610658577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:01 Heat of formation + Delta-G solvation = 92.429498 kcal Electronic energy + Delta-G solvation = -15426.982304 eV Core-core repulsion = 12910.910939 eV Total energy + Delta-G solvation = -2516.071366 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.90443 -37.17402 -33.37479 -32.27120 -32.14373 -29.08303 -27.89943 -27.04478 -25.11546 -23.81598 -21.27000 -20.26200 -19.02777 -17.65368 -16.10473 -15.77428 -14.96365 -14.50363 -14.10560 -13.86718 -13.37314 -13.08795 -12.87037 -12.50822 -12.23668 -11.68287 -11.47649 -11.04404 -11.00978 -10.75902 -10.61381 -10.44811 -9.97981 -9.95759 -9.73894 -9.72580 -9.25625 -8.81391 -8.34076 -7.11825 -5.96087 -3.99120 1.76231 2.78305 3.13005 3.34264 3.41863 3.47111 4.15431 4.47159 4.76570 4.93103 5.24465 5.29156 5.36431 5.40650 5.65108 6.06912 6.13191 6.32750 6.48421 6.50065 6.65933 6.77135 6.88261 6.97670 7.15586 7.18780 7.51441 7.76629 7.88191 8.14941 8.37140 8.42780 8.62523 9.06491 9.65406 11.11294 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046920 B = 0.006175 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.613045 B = 4533.676031 C = 4715.855659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.270 3.730 3 N -0.524 5.524 4 C 0.258 3.742 5 C 0.141 3.859 6 N -0.526 5.526 7 C 0.035 3.965 8 C 0.212 3.788 9 H 0.043 0.957 10 C -0.174 4.174 11 C -0.496 4.496 12 H 0.063 0.937 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.284 1.284 19 N -0.319 5.319 20 N -0.492 5.492 21 H 0.434 0.566 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.021 0.979 30 H 0.008 0.992 31 H 0.031 0.969 32 H 0.090 0.910 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.482 -10.634 -4.900 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.008 4.008 3 N -0.253 5.253 4 C -0.025 4.025 5 C 0.010 3.990 6 N -0.251 5.251 7 C -0.114 4.114 8 C 0.106 3.894 9 H 0.061 0.939 10 C -0.233 4.233 11 C -0.535 4.535 12 H 0.081 0.919 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.211 1.211 19 N -0.149 5.149 20 N -0.210 5.210 21 H 0.279 0.721 22 H 0.106 0.894 23 H 0.097 0.903 24 H 0.116 0.884 25 H 0.113 0.887 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.027 0.973 31 H 0.050 0.950 32 H 0.108 0.892 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.180 -10.316 -4.677 15.915 hybrid contribution 0.633 -0.716 0.520 1.088 sum -10.546 -11.033 -4.157 15.818 Atomic orbital electron populations 1.20330 0.84061 1.04789 1.04127 1.24408 0.96523 0.83136 0.96750 1.70395 1.01728 1.29094 1.24098 1.24420 0.93390 0.89615 0.95082 1.20337 0.89413 0.95484 0.93743 1.62305 1.43886 1.08246 1.10653 1.22251 0.97038 0.91774 1.00315 1.19356 0.85300 0.87733 0.97006 0.93872 1.22428 1.03514 1.01779 0.95612 1.21135 1.22828 1.18073 0.91465 0.91903 1.24912 0.95968 0.96119 0.97290 1.69892 1.28320 1.24179 1.31018 0.86459 0.77771 0.78254 0.85023 1.19815 1.21228 1.21052 1.78039 0.96129 1.12908 1.27785 1.47984 1.04689 1.09637 1.58720 0.72117 0.89358 0.90252 0.88392 0.88739 0.93091 0.90911 0.93967 0.96102 0.97257 0.94954 0.89189 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.51 36.01 0.38 -0.18 16 2 C 0.27 3.60 8.24 -155.69 -1.28 2.32 16 3 N -0.52 -9.42 11.19 -8.16 -0.09 -9.52 16 4 C 0.26 4.92 6.77 -156.86 -1.06 3.86 16 5 C 0.14 2.86 5.03 -4.98 -0.03 2.84 16 6 N -0.53 -12.13 4.73 -237.73 -1.13 -13.26 16 7 C 0.03 0.75 8.72 60.07 0.52 1.28 16 8 C 0.21 5.46 2.34 -68.87 -0.16 5.30 16 9 H 0.04 1.21 8.03 -51.93 -0.42 0.79 16 10 C -0.17 -4.27 8.28 37.16 0.31 -3.96 16 11 C -0.50 -13.85 7.94 -34.44 -0.27 -14.12 16 12 H 0.06 1.78 6.75 -52.49 -0.35 1.42 16 13 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 14 N -0.89 -25.66 11.32 55.43 0.63 -25.03 16 15 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 N -0.32 -5.58 11.95 32.42 0.39 -5.20 16 20 N -0.49 -6.36 7.45 32.62 0.24 -6.12 16 21 H 0.43 3.69 8.96 -182.33 -1.63 2.06 16 22 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.09 1.89 8.00 -51.93 -0.42 1.47 16 26 H 0.05 1.01 6.94 -51.93 -0.36 0.65 16 27 H 0.07 1.65 6.53 -51.93 -0.34 1.31 16 28 H 0.04 0.86 6.53 -51.93 -0.34 0.53 16 29 H 0.02 0.44 6.28 -51.93 -0.33 0.12 16 30 H 0.01 0.19 6.75 -51.93 -0.35 -0.16 16 31 H 0.03 0.77 6.39 -51.93 -0.33 0.44 16 32 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 270.58 15.07 4.08 4.08 Total: -1.00 -32.54 270.58 -8.18 -40.72 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.59 Total: -1.18 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.69 Total: -1.15 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.04 Total: -59.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.54 -8.18 -40.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610658577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.150 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds