Wall clock time and date at job start Sun Mar 29 2020 21:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50694 * 109.46881 * 2 1 4 4 N 1.30166 * 126.80479 * 270.02377 * 3 2 1 5 5 O 1.20927 * 111.60936 * 179.97438 * 4 3 2 6 6 C 1.34038 * 111.56258 * 359.97438 * 5 4 3 7 7 C 1.50698 * 126.77769 * 180.02562 * 6 5 4 8 8 C 1.35455 * 106.45119 * 0.02562 * 6 5 4 9 9 C 1.50693 * 128.00933 * 180.26302 * 8 6 5 10 10 N 1.46498 * 109.47152 * 269.67717 * 9 8 6 11 11 C 1.46498 * 120.00087 * 270.00140 * 10 9 8 12 12 C 1.36929 * 119.99894 * 90.00357 * 10 9 8 13 13 H 1.08001 * 120.00457 * 22.10939 * 12 10 9 14 14 C 1.38815 * 120.00096 * 202.11249 * 12 10 9 15 15 N 1.31615 * 119.99853 * 11.21046 * 14 12 10 16 16 Si 1.86802 * 120.00122 * 191.21036 * 14 12 10 17 17 H 1.48493 * 109.47070 * 60.00029 * 16 14 12 18 18 H 1.48505 * 109.46927 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46979 * 299.99709 * 16 14 12 20 20 H 1.08999 * 109.46656 * 299.99738 * 1 2 3 21 21 H 1.08995 * 109.47092 * 59.99850 * 1 2 3 22 22 H 1.09003 * 109.47165 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46656 * 240.00262 * 2 1 3 24 24 H 1.09002 * 109.46792 * 120.00371 * 2 1 3 25 25 H 1.09003 * 109.46883 * 269.95872 * 7 6 5 26 26 H 1.09002 * 109.47312 * 29.95211 * 7 6 5 27 27 H 1.09000 * 109.47488 * 149.95622 * 7 6 5 28 28 H 1.09000 * 109.47135 * 29.68160 * 9 8 6 29 29 H 1.08998 * 109.47006 * 149.67635 * 9 8 6 30 30 H 1.08995 * 109.47061 * 94.60473 * 11 10 9 31 31 H 1.08999 * 109.47289 * 214.60708 * 11 10 9 32 32 H 1.09004 * 109.47113 * 334.60581 * 11 10 9 33 33 H 0.97002 * 120.00408 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1562 -1.0422 5 8 2.6805 3.2565 -0.7253 6 6 2.7296 3.3968 0.6069 7 6 3.1618 4.6225 1.3697 8 6 2.3142 2.2194 1.1322 9 6 2.1773 1.8490 2.5864 10 7 3.4339 1.2647 3.0618 11 6 3.6516 -0.1809 2.9670 12 6 4.4048 2.0698 3.5948 13 1 4.1436 3.0383 3.9950 14 6 5.7248 1.6412 3.6208 15 7 6.0826 0.5709 2.9435 16 14 6.9934 2.5834 4.6169 17 1 6.5917 2.5944 6.0464 18 1 8.3182 1.9265 4.4795 19 1 7.0791 3.9788 4.1160 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 4.2350 4.5758 1.5545 26 1 2.9322 5.5137 0.7856 27 1 2.6308 4.6646 2.3207 28 1 1.9483 2.7415 3.1687 29 1 1.3724 1.1232 2.7023 30 1 4.1894 -0.4077 2.0466 31 1 4.2375 -0.5170 3.8225 32 1 2.6897 -0.6936 2.9615 33 1 7.0050 0.2711 2.9618 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610710099.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:00 Heat of formation + Delta-G solvation = 69.482564 kcal Electronic energy + Delta-G solvation = -16030.365931 eV Core-core repulsion = 13481.006761 eV Total energy + Delta-G solvation = -2549.359171 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.11678 -36.22795 -34.56331 -32.95288 -31.10913 -30.65282 -27.62991 -26.26039 -25.59817 -23.84809 -22.01335 -20.19553 -19.16104 -16.96791 -16.69934 -16.20276 -14.82195 -14.32819 -14.06857 -13.57864 -13.31964 -13.18716 -12.80754 -12.60313 -12.31306 -11.96700 -11.49015 -11.34000 -11.14431 -11.02975 -10.89101 -10.67152 -10.49201 -10.16956 -10.03272 -9.87625 -9.16667 -8.58855 -8.32733 -6.83440 -5.75668 -3.21303 2.22856 2.98720 3.35504 3.41624 3.42145 3.87245 4.47678 4.77973 5.09705 5.40873 5.50153 5.53295 5.59549 5.66964 5.70711 5.87321 5.97692 6.04845 6.09272 6.23117 6.35609 6.41413 6.52598 6.63662 6.68385 6.73952 6.90476 7.35958 7.69794 7.77495 8.35170 9.00420 9.19191 9.81749 10.31112 11.28987 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029749 B = 0.009997 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.978012 B = 2800.058272 C = 3298.026855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 C 0.027 3.973 4 N -0.384 5.384 5 O 0.079 5.921 6 C -0.040 4.040 7 C -0.060 4.060 8 C -0.190 4.190 9 C 0.218 3.782 10 N -0.589 5.589 11 C 0.164 3.836 12 C -0.253 4.253 13 H 0.070 0.930 14 C 0.003 3.997 15 N -0.905 5.905 16 Si 0.904 3.096 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.282 1.282 20 H 0.057 0.943 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.027 0.973 31 H 0.047 0.953 32 H -0.003 1.003 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 2.497 -2.178 9.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.132 4.132 4 N -0.092 5.092 5 O 0.015 5.985 6 C -0.104 4.104 7 C -0.117 4.117 8 C -0.197 4.197 9 C 0.090 3.910 10 N -0.311 5.311 11 C 0.020 3.980 12 C -0.383 4.383 13 H 0.088 0.912 14 C -0.196 4.196 15 N -0.550 5.550 16 Si 0.734 3.266 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.209 1.209 20 H 0.076 0.924 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.016 0.984 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.523 2.190 -3.472 9.460 hybrid contribution 1.060 0.345 1.057 1.536 sum -7.463 2.536 -2.415 8.244 Atomic orbital electron populations 1.21695 0.94652 1.01593 1.02001 1.19884 0.95597 0.89116 1.03646 1.23287 1.02249 0.98651 0.89041 1.73666 1.17852 0.93191 1.24444 1.84663 1.63678 1.26785 1.23350 1.24072 1.03845 0.99488 0.83016 1.20170 1.03137 0.90616 0.97801 1.22407 1.04830 0.92230 1.00224 1.19260 0.89769 0.97001 0.85015 1.44098 1.15006 1.03182 1.68771 1.20835 0.94109 0.82004 1.01065 1.19153 0.86788 1.00829 1.31524 0.91226 1.25066 0.97051 0.98204 0.99240 1.70057 1.16969 1.25575 1.42357 0.86353 0.80885 0.79295 0.80109 1.20980 1.21664 1.20873 0.92378 0.92935 0.92170 0.90951 0.89334 0.89391 0.91473 0.89583 0.92513 0.93111 0.95430 0.93475 0.98417 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.90 37.16 0.37 -1.52 16 2 C -0.04 -0.74 6.44 -27.88 -0.18 -0.92 16 3 C 0.03 0.53 6.58 -82.10 -0.54 -0.01 16 4 N -0.38 -8.03 12.07 33.42 0.40 -7.63 16 5 O 0.08 1.61 11.20 17.18 0.19 1.80 16 6 C -0.04 -0.78 7.49 -35.30 -0.26 -1.05 16 7 C -0.06 -0.95 10.30 36.00 0.37 -0.57 16 8 C -0.19 -3.87 5.90 -104.42 -0.62 -4.49 16 9 C 0.22 4.41 6.03 -5.20 -0.03 4.38 16 10 N -0.59 -14.39 2.91 -182.51 -0.53 -14.92 16 11 C 0.16 3.99 8.47 59.85 0.51 4.49 16 12 C -0.25 -6.65 9.68 -15.06 -0.15 -6.80 16 13 H 0.07 1.75 7.84 -52.49 -0.41 1.33 16 14 C 0.00 0.08 5.14 -17.43 -0.09 -0.01 16 15 N -0.91 -26.20 10.56 55.49 0.59 -25.61 16 16 Si 0.90 21.38 29.57 -169.99 -5.03 16.35 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 24 H 0.09 1.52 7.05 -51.93 -0.37 1.16 16 25 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.26 7.44 -51.93 -0.39 0.87 16 28 H 0.06 1.08 7.33 -51.93 -0.38 0.69 16 29 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 30 H 0.03 0.74 7.40 -51.93 -0.38 0.35 16 31 H 0.05 1.23 7.19 -51.93 -0.37 0.85 16 32 H 0.00 -0.06 7.32 -51.93 -0.38 -0.44 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 280.15 15.07 4.22 4.22 Total: -1.00 -30.38 280.15 -5.54 -35.92 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -4.76 Total: -3.64 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -0.62 Total: -6.49 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.46 Total: -48.16 kcal Atomic # 8 Polarization: 1.61 SS G_CDS: 0.19 Total: 1.80 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.38 -5.54 -35.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610710099.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.403 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds