Wall clock time and date at job start Sun Mar 29 2020 21:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47832 * 111.00010 * 2 1 4 4 C 1.54143 * 107.25598 * 214.49419 * 3 2 1 5 5 H 1.09006 * 112.88838 * 236.39531 * 4 3 2 6 6 C 1.54097 * 108.36357 * 110.55884 * 4 3 2 7 7 N 1.46605 * 107.07859 * 222.48058 * 6 4 3 8 8 C 1.34776 * 125.31001 * 197.88054 * 7 6 4 9 9 O 1.21690 * 120.00511 * 179.97438 * 8 7 6 10 10 C 1.46379 * 119.99724 * 359.97438 * 8 7 6 11 11 H 1.08001 * 119.99588 * 359.97438 * 10 8 7 12 12 C 1.40045 * 120.00041 * 180.02562 * 10 8 7 13 13 N 1.30669 * 120.00131 * 359.97438 * 12 10 8 14 14 Si 1.86808 * 119.99983 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47152 * 59.99541 * 14 12 10 16 16 H 1.48497 * 109.47110 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46847 * 300.00110 * 14 12 10 18 18 C 1.46576 * 109.39099 * 17.87648 * 7 6 4 19 19 C 1.53267 * 108.18816 * 357.99539 * 18 7 6 20 20 H 1.09004 * 112.58026 * 222.63509 * 19 18 7 21 21 C 1.48557 * 111.00132 * 242.54658 * 2 1 3 22 22 H 1.09006 * 109.46665 * 60.00113 * 1 2 3 23 23 H 1.08996 * 109.46928 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47354 * 300.00442 * 1 2 3 25 25 H 1.09002 * 109.88564 * 95.08112 * 3 2 1 26 26 H 1.09006 * 110.01825 * 333.98499 * 3 2 1 27 27 H 1.09001 * 109.92214 * 103.12157 * 6 4 3 28 28 H 1.09002 * 110.07892 * 341.92905 * 6 4 3 29 29 H 0.96994 * 120.00039 * 180.02562 * 13 12 10 30 30 H 1.09005 * 109.73374 * 117.68729 * 18 7 6 31 31 H 1.08999 * 109.73608 * 238.29598 * 18 7 6 32 32 H 1.09000 * 110.67085 * 278.38453 * 21 2 1 33 33 H 1.08995 * 110.67381 * 41.37167 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9988 1.3801 0.0000 4 6 3.2954 1.3722 -0.8337 5 1 4.1575 1.7445 -0.2802 6 6 3.0383 2.1505 -2.1385 7 7 3.6629 1.3889 -3.2244 8 6 3.9627 1.8754 -4.4450 9 8 4.4827 1.1549 -5.2764 10 6 3.6627 3.2706 -4.7706 11 1 3.2009 3.9100 -4.0328 12 6 3.9737 3.7761 -6.0391 13 7 4.5321 3.0024 -6.9318 14 14 3.5903 5.5565 -6.4548 15 1 4.3223 6.4512 -5.5227 16 1 4.0130 5.8412 -7.8496 17 1 2.1300 5.7922 -6.3227 18 6 3.9108 0.0157 -2.7756 19 6 3.4670 -0.0971 -1.3129 20 1 4.1734 -0.6607 -0.7035 21 6 2.0015 -0.6394 -1.2307 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 2.2165 1.6937 1.0210 26 1 1.2733 2.0583 -0.4492 27 1 3.4872 3.1417 -2.0744 28 1 1.9665 2.2395 -2.3163 29 1 4.7478 3.3526 -7.8103 30 1 3.3384 -0.6808 -3.3885 31 1 4.9737 -0.2117 -2.8563 32 1 2.0005 -1.7249 -1.1316 33 1 1.4249 -0.3334 -2.1036 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618875905.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:54 Heat of formation + Delta-G solvation = -52.374185 kcal Electronic energy + Delta-G solvation = -15813.806647 eV Core-core repulsion = 13259.163371 eV Total energy + Delta-G solvation = -2554.643276 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.26318 -38.91639 -36.42449 -34.69359 -32.39886 -31.64129 -28.77602 -27.10326 -27.01034 -23.98644 -22.13019 -21.36823 -20.56227 -18.57983 -17.88054 -17.19760 -16.22130 -15.90950 -15.76971 -15.53077 -15.36352 -14.48027 -14.18245 -13.73495 -13.58534 -13.51161 -13.10299 -12.80425 -12.71525 -12.53150 -12.39368 -12.28116 -12.09004 -11.98688 -11.67569 -11.51907 -10.96573 -9.95645 -9.44755 -9.14354 -8.34853 -6.91617 1.36409 1.40136 1.52425 2.20201 2.39029 2.83024 3.04199 3.37001 3.46647 3.64032 3.79470 4.16124 4.22597 4.32043 4.46707 4.53951 4.55096 4.70357 4.74792 4.75735 4.79428 4.96430 5.01713 5.08880 5.15314 5.26829 5.31433 5.60073 5.82012 5.99233 6.04885 6.36161 6.80596 7.40427 8.38867 8.61151 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041058 B = 0.007405 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.790393 B = 3780.227072 C = 4146.246167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.523 5.523 3 C 0.048 3.952 4 C -0.101 4.101 5 H 0.113 0.887 6 C 0.122 3.878 7 N -0.650 5.650 8 C 0.549 3.451 9 O -0.633 6.633 10 C -0.566 4.566 11 H 0.087 0.913 12 C 0.028 3.972 13 N -0.822 5.822 14 Si 0.999 3.001 15 H -0.252 1.252 16 H -0.271 1.271 17 H -0.254 1.254 18 C 0.120 3.880 19 C -0.084 4.084 20 H 0.123 0.877 21 C 0.046 3.954 22 H 0.019 0.981 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.276 0.724 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.097 0.903 33 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 -0.818 14.710 16.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.247 5.247 3 C -0.080 4.080 4 C -0.121 4.121 5 H 0.131 0.869 6 C -0.001 4.001 7 N -0.387 5.387 8 C 0.356 3.644 9 O -0.520 6.520 10 C -0.602 4.602 11 H 0.105 0.895 12 C -0.188 4.188 13 N -0.451 5.451 14 Si 0.818 3.182 15 H -0.175 1.175 16 H -0.196 1.196 17 H -0.178 1.178 18 C -0.004 4.004 19 C -0.104 4.104 20 H 0.141 0.859 21 C -0.082 4.082 22 H 0.038 0.962 23 H 0.096 0.904 24 H 0.103 0.897 25 H 0.120 0.880 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.115 0.885 33 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.484 -1.502 14.495 15.950 hybrid contribution -0.273 0.886 -1.520 1.780 sum -6.757 -0.616 12.975 14.642 Atomic orbital electron populations 1.22585 0.86859 1.02873 1.01122 1.64824 1.09106 1.14985 1.35751 1.22976 0.94109 0.89911 1.01005 1.23007 0.99698 0.94799 0.94554 0.86900 1.21963 0.96256 0.95895 0.86030 1.48256 1.65732 1.11118 1.13582 1.18454 0.78044 0.89033 0.78870 1.90549 1.50273 1.62003 1.49180 1.21369 1.43717 0.94830 1.00331 0.89532 1.27043 0.91875 1.04790 0.95043 1.70182 1.31109 1.38846 1.04971 0.85057 0.79976 0.75100 0.78104 1.17548 1.19600 1.17795 1.21356 0.98827 0.85205 0.95039 1.23036 0.97475 0.96790 0.93066 0.85870 1.23525 0.93269 1.00498 0.90869 0.96226 0.90403 0.89654 0.87981 0.93244 0.92072 0.93961 0.91385 0.94700 0.94479 0.88522 0.95423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.40 127.69 1.20 1.47 16 2 N -0.52 -12.02 5.55 -905.64 -5.03 -17.05 16 3 C 0.05 1.08 6.24 86.51 0.54 1.62 16 4 C -0.10 -2.77 4.12 -9.18 -0.04 -2.81 16 5 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 6 C 0.12 4.55 5.68 86.73 0.49 5.04 16 7 N -0.65 -31.41 3.31 -823.76 -2.72 -34.13 16 8 C 0.55 33.60 7.77 86.36 0.67 34.27 16 9 O -0.63 -44.51 15.33 -4.32 -0.07 -44.58 16 10 C -0.57 -33.12 8.98 24.83 0.22 -32.89 16 11 H 0.09 4.56 6.74 -2.91 -0.02 4.54 16 12 C 0.03 1.57 5.50 85.30 0.47 2.04 16 13 N -0.82 -51.40 11.83 21.83 0.26 -51.14 16 14 Si 1.00 41.36 29.56 68.60 2.03 43.39 16 15 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 16 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 17 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 18 C 0.12 4.88 6.29 86.45 0.54 5.42 16 19 C -0.08 -2.42 4.11 -8.63 -0.04 -2.46 16 20 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 21 C 0.05 1.22 5.78 87.20 0.50 1.72 16 22 H 0.02 0.41 8.01 -2.38 -0.02 0.39 16 23 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 24 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.14 6.73 -2.38 -0.02 1.13 16 27 H 0.06 2.31 7.38 -2.39 -0.02 2.29 16 28 H 0.04 1.57 7.21 -2.39 -0.02 1.56 16 29 H 0.28 15.58 8.29 -92.71 -0.77 14.82 16 30 H 0.03 1.50 7.81 -2.38 -0.02 1.48 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.03 0.86 7.79 -2.39 -0.02 0.84 16 Total: -1.00 -77.54 267.72 0.13 -77.42 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.09 Total: 12.68 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 4.57 Total: 13.42 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -7.49 Total: -102.32 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.07 Total: -44.58 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -77.54 0.13 -77.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618875905.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.042 kcal (2) G-P(sol) polarization free energy of solvation -77.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds